Lsi04G000750 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome c oxidase assembly protein cox16
Location	chr04: 928356 .. 932579 (+)
RNA-Seq Expression	Lsi04G000750
Synteny	Lsi04G000750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGTTGCAAAACCCTTGCCTCTGTCTCGGCCCTGTCGACATATTTATTTGAGGCCGGAGACAGGATGGATAAACTTTTTTTTTTCTTTTTTAGAAAGGAGATTGGTGGAAAAAATGAGGAATTAATTAATTTAGAAGAACATCTTCCTCCAGGTCATTGTGAATCTCTGCTTACATTCTAAATATTGCACTCTCTTACATTAAACATCACAAATCCATATGTGAAGTTCGATTGGACTCAATATATTAGACATTAGTGTACTATAATATAGAACAGTAGATATTATAAGTGACACTAGTCGCTAGAAAAAGATGCTAAGTCTTACAAATAACAAGTGAAATTTTGTGTTATAAAAATACATTCTATTCCCTCCCACTTGAATATTGCAAGTGCAACCATTATCATTTTTCTCATGTTCTTCAATTCAGGTTTTTCCGTAGTTTTCACAATGACCAGCACTGAGGCAGGAATGGGTCAGTCTACAGAACCAAAGAAGATTGCCACTGCCAACAATGCAGCCCGGGCATCTCCATCCATGTTTAGAAGATGGGGCAGAAGACACCCATTTATCAGATATGGACTTCCAATGATCTCTCTCACTGTACTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGGTTAGTGGTTACTGGTACTGTTTGAAGTTTAAGATTCAAAGTGATTGTGTTGTCTTCTGTAGGAGTTCATTTTAATTTACTGTATCTTCTTTTCGAAGTGGAGAAATTTCTGTCCTCAAGATTGTGATGGCCCGATGTAGAACCTCGAAAAACCTGTTTTATACAAAAGAATGACGTTGATAAAATGATTGATTCTCAGTAAATGGATGCCTTGCAATCTATATTATTATTGCAAGGACATGGGAAAGGGCCTGGACTTTGCCTGGAAGTGTTCATTGAGTTCATGGGATTTAGCCTCAAGAACTGAAATTTTTTATTGAACCTGAATCCGAATATATTGAAAGATAAACAATAATAGAATTACAAGATAAACCAAGTGTTTGAGATACTTAGACCCTCCAAATCTTGAGAATTCATACTCCAAAATATTGCCAATCTTCTTTATTTCCCACCCTCTCTATTTATATAACCAACAAGCCTAACAAACTCTCTAACTAATTACTAATATATTCTTATAATATCTCAATTAGCATACCTATCAATTTCGTGTACAATCCTTTAACTTTATATACTCTACCATTTGGCCTACTTAGATCCTCCAAATCTTGAGAATTAATACTCCAAAACATTCACAACGTTTTCTTGCATCAATGTCTTTCGAAGTGCTCTCTTTCATATCTTGGATAGTGTTGTATTTGAAGTAGACTGTTAACAAAAAGGAAAACACTTCCTTTCAGCTAGTAGTAAAAATGTGAGCCATAGAGATTTCCAATTGTTAGAAAATAATTATCAAGACCATATTAGTTGTAATTTTTCCATAGTTCCATGTTTGCCTTTCATGTTTATGTCTTATATGATGTTGGATTATCATTTTCCTATTTTCCATTTAATATTCTTTTAAAACACTTGTTGAATCCGTATTGTAGTTCAGTAAAGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTATCAAGAACAGGACCTATTGATGCGTATAAGCCAAAAAATATATCTTTAGAAGAAGAACTGAGGGTATTATTACTCTTTCTCATTGCAACTCATTTGTTATTATTATCTGCAGTTTCACTATAAATAGCTTGATTGTTAATGATTTTCAGGCTTTACAAGAAAAGGTAGACATTAACAACTATGAATACAAGAGAATTCCAAAGCCTACTGATCGAACATCCTAAAATTTTGCCCTCCAAATTTCATACAAAACTTGCTCAGGTATTTTGTTTCCACACTTGTGATGCAAGCTAGATTTAATATCCAAAGAGAATATTTGGAATCAATGTCAAGCTAGCGATTCTTCTTGAAAATTATGCCAATAAACATCCTTTTCTAATTAGCAGAATGCTCCCTTTTTAGTTTAGTTTCAACTTTTTGAATTGGTTGATCTTTTATCTGGTGATATTTGGGAGTAATTTTGAAATTGCTAAAATCACTTTTCTAAGGTTCCAAATCATTCTCGTACATGTTTTTTTGGTGATTCAAAATTATTTTTTAATGTTTGGATTTAGACTTTTAAGCACAATTTTTATATCATCAAAATTGACTTTAGTTTACTTTAGTTTCGAGTGATTTTAACAATATGTTAAACATAAATTTCAAGTTTATATTTAATAGATTAATTTTAAAAAAACATCAAATATGTGATAAAATTATTAAAAAGTTCAAAACTAAATTCACAAACTTCAATCATGCACATGTTAGGCAATGAAGTACACTAGCTATCATTATGTAAGTTAACAATCATTTTTCTCAAAAAGCGATTTTGCAGTTTCTAGTATAATTTTCTCATCTTTACTATAGAAGTCTGAATTTTTTTTTAATTTTTTTTCATAAGAGATTTTCAAACACAGCCACAGTTCACACTTTGTACAGACAAAATTGAATCATTCTTAAGCCATTGTCCACAGCATTTCTACATGAATCTTTCCGTTCTTTGAGTTGATCAGATTGTACTTCTCGTTTATCCTCCCGTTGCTCACAACATCGGCGAGATTGATTTCCACATGTCCCAATGATTCCTATATGGGCGTACAACAGATGTTTTCAAAGTCTTGATTAAAAAAACAAGTCAAGTTAACATCACGCTGATTAGTTTGAATTTCATTTTACTTTAGACCATGCACTTTCAATAACTTCTAAAATCACTCTTTTAAAGTTTTTTTTTTTTAATTATTGAATTTGGTTAAATAAATAATAGTTTTCATGCAAGAAAAGGGTACTATACTACTTTCATAATTTAAAAAGAAAATGTTAAGAAAGATTTTTTGTTTCTTTTGAAAAAATCAATAATAAATTCATACTAAGGATTGCTTTTAAGATTTATTGAAAGTGCAATAATTAAAATTGAATATGTGGAATAAAATGAAATGACATTTAGGACTAAAATAATATTTTAAATTAAAAATGATGATATCTGATAGAAAAATTAAACTTTACAAAAAAAATGGCTTATTTTGCAAGTCACCACATTTTACAAATTTCTAAATATCAAAAGAAGAGAATCATCGTTAATTGACAATTATAAATTTGAATATTTTATTATACATTTATATATATTTTTGGAAATGATGTATTTTACATATTTTGAAATATTCTAGAAATGAAAAATGAAAAACCTATTCAAATTTTCGGTTTAATAACGTGAGAGTTGAGTAGTCTGTGTTTTGGACAAATACCTTTTGCAGAAAATTGAAGACAGTCCGTTTGCTCATAACTTCAATATGGATCTTCTCTCGAATTGGAGGCTCCTCCAGCATAAATGGGAATTCTTCATTCCATGATGGGTCACGAGTTTTCTTGATCATCTACAGAAAGAAAATCAACAATAAATAATCACAGAAAAACTGAAGGACGAAACTAATAGCATATCACAAAATCCAAAAGTCTACCTTCGTTTTCTTCCTCTCCCCTCTGAAGTGTATAACAGCATAAGGATTATTGTGCTTCTCCCCCTCAACATCATGAGCTCCCTGGATTGTTACAGATAATACACCTGCTTCGCTTGATGTCTGGTTTTCCGGCTGCCCGACGCTTCCGCCTTCACTCTTCAAGTCACTGGTTGAGTTTTCAAGATATTTCATGCTTTCTTCTCTTAAAGGAGTAAACATGAGCTCCACCACAAGTGTCCCTCTAGGCTTCTTGTTTTGGGGATCGTTGATATCTGTATTCTTGAGCAAATCGAGCACGAGTTCCTTGGTCTCGTAGGGTGTAAGCAGCTTTAGAGGAACTAACTGCATTCCCAATCGATCATGTCCACCAACCTGCAATGATAAGTGTAAATCGAACCACAATTTGACGACAACATTGAATAATTTTTCCTGAACTTTAGCTTTCGTGATGTTTGCAGAGCGCTTCCATGGATATGGATTTTATTTGTTCAAAGAGTGTGTTTAGTTTGCAATGACGAAATGTTGAACTGATAATCATATTATATTACCCTACTTCTTATAATTTATTTTTCTAATATATTGTAAAAACGAAAAAGAAGATTAAGGGCTGAGCTCTATTAACCAGTCCTGTACCATGAAGGAGAAT

mRNA sequence

ATGGAGAAGGAGATTGGTGGAAAAAATGAGGAATTAATTAATTTAGAAGAACATCTTCCTCCAGGTTTTTCCGTAGTTTTCACAATGACCAGCACTGAGGCAGGAATGGGTCAGTCTACAGAACCAAAGAAGATTGCCACTGCCAACAATGCAGCCCGGGCATCTCCATCCATGTTTAGAAGATGGGGCAGAAGACACCCATTTATCAGATATGGACTTCCAATGATCTCTCTCACTGTACTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGTAAAGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTATCAAGAACAGGACCTATTGATGCGTATAAGCCAAAAAATATATCTTTAGAAGAAGAACTGAGGGCTTTACAAGAAAAGGTAGACATTAACAACTATGAATACAAGAGAATTCCAAAGCCTACTGATCGAACATCCTAAAATTTTGCCCTCCAAATTTCATACAAAACTTGCTCAGAAAATTGAAGACAGTCCGTTTGCTCATAACTTCAATATGGATCTTCTCTCGAATTGGAGGCTCCTCCAGCATAAATGGGAATTCTTCATTCCATGATGGGTCACGAGTTTTCTTGATCATCTACAGAAAGAAAATCAACAATAAATAATCACAGAAAAACTGAAGGACGAAACTAATAGCATATCACAAAATCCAAAAGTCTACCTTCGTTTTCTTCCTCTCCCCTCTGAAGTGTATAACAGCATAAGGATTATTGTGCTTCTCCCCCTCAACATCATGAGCTCCCTGGATTGTTACAGATAATACACCTGCTTCGCTTGATGTCTGGTTTTCCGGCTGCCCGACGCTTCCGCCTTCACTCTTCAAGTCACTGGTTGAGTTTTCAAGATATTTCATGCTTTCTTCTCTTAAAGGAGTAAACATGAGCTCCACCACAAGTGTCCCTCTAGGCTTCTTGTTTTGGGGATCGTTGATATCTGTATTCTTGAGCAAATCGAGCACGAGTTCCTTGGTCTCGTAGGGTGTAAGCAGCTTTAGAGGAACTAACTGCATTCCCAATCGATCATGTCCACCAACCTGCAATGATAAGTGTAAATCGAACCACAATTTGACGACAACATTGAATAATTTTTCCTGAACTTTAGCTTTCGTGATGTTTGCAGAGCGCTTCCATGGATATGGATTTTATTTGTTCAAAGAGTGTGTTTAGTTTGCAATGACGAAATGTTGAACTGATAATCATATTATATTACCCTACTTCTTATAATTTATTTTTCTAATATATTGTAAAAACGAAAAAGAAGATTAAGGGCTGAGCTCTATTAACCAGTCCTGTACCATGAAGGAGAAT

Coding sequence (CDS)

ATGGAGAAGGAGATTGGTGGAAAAAATGAGGAATTAATTAATTTAGAAGAACATCTTCCTCCAGGTTTTTCCGTAGTTTTCACAATGACCAGCACTGAGGCAGGAATGGGTCAGTCTACAGAACCAAAGAAGATTGCCACTGCCAACAATGCAGCCCGGGCATCTCCATCCATGTTTAGAAGATGGGGCAGAAGACACCCATTTATCAGATATGGACTTCCAATGATCTCTCTCACTGTACTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGTAAAGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTATCAAGAACAGGACCTATTGATGCGTATAAGCCAAAAAATATATCTTTAGAAGAAGAACTGAGGGCTTTACAAGAAAAGGTAGACATTAACAACTATGAATACAAGAGAATTCCAAAGCCTACTGATCGAACATCCTAA

Protein sequence

MEKEIGGKNEELINLEEHLPPGFSVVFTMTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEYKRIPKPTDRTS

Homology

[Close]

BLAST of Lsi04G000750 vs. ExPASy TrEMBL
Match: A0A6J1GWL5 (uncharacterized protein LOC111458129 OS=Cucurbita moschata OX=3662 GN=LOC111458129 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.6e-64
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAGMGQSTE KK  +ANNAAR+SPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. ExPASy TrEMBL
Match: A0A1S4DWC3 (uncharacterized protein LOC103489460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489460 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.6e-64
Identity = 124/131 (94.66%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAGMG+STEPKKI++A+NAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEELRALQE+VDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQEQVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIP+PTDRTS
Sbjct: 121 KRIPRPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. ExPASy TrEMBL
Match: A0A6J1HX89 (uncharacterized protein LOC111468648 OS=Cucurbita maxima OX=3661 GN=LOC111468648 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAG+GQSTE KK  +ANNAAR+SPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGVGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. ExPASy TrEMBL
Match: A0A6J1CBH5 (uncharacterized protein LOC111010064 OS=Momordica charantia OX=3673 GN=LOC111010064 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.5e-59
Identity = 117/131 (89.31%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTS E GM QS EP KI++A N ARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSPEVGMVQSMEPNKISSATNTARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGP+DAYKPKNISLEEELRALQEKV+IN+YEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPVDAYKPKNISLEEELRALQEKVNINDYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKP+ RTS
Sbjct: 121 KRIPKPSGRTS 131

[Close]

BLAST of Lsi04G000750 vs. ExPASy TrEMBL
Match: A0A5A7SXX4 (Cytochrome c oxidase assembly protein cox16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002640 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 108/128 (84.38%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 32  TEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGHLLQ 91
           TEAGMG+STEPKKI++A+NAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGHLLQ
Sbjct: 162 TEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGHLLQ 221

Query: 92  GSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEYKRI 151
           GSKDIAKVKDDQEWEITEMR+ALSRTGPIDA+   ++ + ++ +ALQE+VDINNYEYKRI
Sbjct: 222 GSKDIAKVKDDQEWEITEMREALSRTGPIDAFAINSL-IVDDFQALQEQVDINNYEYKRI 281

Query: 152 PKPTDRTS 160
           P+PTDRTS
Sbjct: 282 PRPTDRTS 288

[Close]

BLAST of Lsi04G000750 vs. NCBI nr
Match: XP_038891357.1 (uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891358.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891360.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891361.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891362.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida])

HSP 1 Score: 255.0 bits (650), Expect = 4.3e-64
Identity = 125/131 (95.42%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAG+GQSTEPKKIA+ NNA RASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGIGQSTEPKKIASVNNATRASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKV+DDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVRDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKPTD+TS
Sbjct: 121 KRIPKPTDQTS 131

[Close]

BLAST of Lsi04G000750 vs. NCBI nr
Match: XP_022956367.1 (uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956369.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956370.1 uncharacterized protein LOC111458129 [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 7.3e-64
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAGMGQSTE KK  +ANNAAR+SPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. NCBI nr
Match: XP_008446874.1 (PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_008446875.1 PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_016900287.1 PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 9.6e-64
Identity = 124/131 (94.66%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAGMG+STEPKKI++A+NAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEELRALQE+VDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQEQVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIP+PTDRTS
Sbjct: 121 KRIPRPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. NCBI nr
Match: XP_004142437.1 (uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_031742066.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 124/131 (94.66%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAGMGQS EPKKI++A+NA RASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSAEPKKISSASNATRASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEELRALQ+KVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQQKVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. NCBI nr
Match: XP_023533207.1 (uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215.1 uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 29  MTSTEAGMGQSTEPKKIATANNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 88
           MTSTEAGMGQSTE KK  +ANNAAR+SPSMF+RWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFKRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 89  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 148
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 149 KRIPKPTDRTS 160
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lsi04G000750 vs. TAIR 10
Match: AT4G14145.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 178.3 bits (451), Expect = 4.8e-45
Identity = 89/133 (66.92%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 29  MTSTEAGM-GQSTEPKKIATA-NNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGL 88
           MT+ E G   Q + P    T      + S + F+RWGRRHPF+RYGLPMISLTV GA+GL
Sbjct: 1   MTTIETGQKTQKSSPSGSGTTPTGTLKQSSASFKRWGRRHPFVRYGLPMISLTVFGALGL 60

Query: 89  GHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNY 148
           G LLQGSKDIAKVKDDQEWEI E RKALSRTGP+DAYKPKN S+E+EL+A+QEKVDIN Y
Sbjct: 61  GQLLQGSKDIAKVKDDQEWEIIETRKALSRTGPVDAYKPKNTSIEDELKAMQEKVDINTY 120

Query: 149 EYKRIPKPTDRTS 160
           EYK+IPK  +  S
Sbjct: 121 EYKKIPKLNESKS 133

The following BLAST results are available for this feature:

BLAST of Lsi04G000750 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G000750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWL5	3.6e-64	96.18	uncharacterized protein LOC111458129 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A1S4DWC3	4.6e-64	94.66	uncharacterized protein LOC103489460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HX89	1.0e-63	95.42	uncharacterized protein LOC111468648 OS=Cucurbita maxima OX=3661 GN=LOC111468648...	[more]
A0A6J1CBH5	4.5e-59	89.31	uncharacterized protein LOC111010064 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7SXX4	3.3e-54	84.38	Cytochrome c oxidase assembly protein cox16 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lsi04G000750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891357.1	4.3e-64	95.42	uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_03889135...	[more]
XP_022956367.1	7.3e-64	96.18	uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 unchar...	[more]
XP_008446874.1	9.6e-64	94.66	PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_004142437.1	1.6e-63	94.66	uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438....	[more]
XP_023533207.1	1.6e-63	95.42	uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215....	[more]

BLAST of Lsi04G000750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14145.1	4.8e-45	66.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020164	Cytochrome c oxidase assembly protein COX16	PFAM	PF14138	COX16	coord: 69..155 e-value: 3.7E-20 score: 72.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000750.1	Lsi04G000750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0031966	mitochondrial membrane