Lsi04G000520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit d, mitochondrial
Location	chr04: 668490 .. 671077 (+)
RNA-Seq Expression	Lsi04G000520
Synteny	Lsi04G000520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGAAGAAGCCCAAGATTATGAACGAGTCATCTCCCAGACAAAAACAGTAGAACAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAATCGCCCTCTCACATTTCCCATTGATTCTCTTCTTCTTTCCTCTGCCAAATCGAGAGAGAACAAAAAAGAAAATGAGCGGCACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGTCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGTCCGGAAGATTCCAATTTTCCACCTTTTTTTCTCTTGTTATTTTCATCGTTGCTAGATCTCTCCCTTTTTATTTGGTTTTTGTTTATGTGGGTTGATTTTGTTTGGCTTGAATGTTTCGAGATTGTTCTTATTTTAATTGTGTTTTTGAGGAATTTTTATAGTTGTGTTTAATTTGGTCTTCATTTCGTGCAAATCCGGTGTGATTTTCTTTTTAATCGGTATATTAATTGCTGAGAATCGTAATGTTCCGTTTTTTGTGGGTTGTAGAGAGGTTAATGTTGATTTAGTTGTGGTCTGTCTGATTGAGGAAGATCGTTCAGAGTAGGATTGGAATTTAGAAAACAAAAATGTTTCTCGTTGTAAAGGGAACATTTGGAACTTGTTTGGATCCAGAAAGTGTTATATGCATCAGATGATAAGAACAAGTTATATAATTCATTATTGCAGCAATCCTTATGTCTCCGGTTTACATAGTCGAGCAACGTCTATTTTATACGAAAATGGCAAATCACAACTATTGGTAGCAGATATGGATTACTTATTGCATATAGTTCAAGTGCAAATGGGATTGTTGGAACATGGCTCAAATAGTATGATGTAAGCATTTCTCTTATGAGTTATAGGTTTTAATCACTCCCTTGTGTGTGCGTGTTTGTGTTTTTAAAAAAGAAGTGCCGTTGGAAGCTAAATTGATTGCTCATAGAGATAACCCTGTTAATTTTGTGCTTTTCTTTTCTATCAGTAAACAAGTTGATCATATTAATGACTAAGGAGTGCTTTTAGTTGTGTTGGCGTTGATGAAGTGAAATTTCCCTCTCACGAGGAAGGGATTGATTTTTATTTCTTTTTCAAAGTACTCTAATAGTGAAAATGGCTACCTTACGGACTTTGCTCAAAATTTTCAAGACTTGCATTATATAAACTGTTTATCTTTGTGTAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGTATGCTCTTTGATTCACTTGTCTTTTGTTGATACTTTGATTTTTTTGTGCAATATTTAGACCAGGCAATATTATGATTTTTTTAGCACAAGGTTTCCTGTGAGGCTTCTCTAATTCGAGTCTTCTGGATCAATGATCATATGCATACATTGTTAATTTGAGATTTTTGTATTTAGACGGCTAGGGCACTTGTTAATTTGAGATTTTTGTATTTAGACGGCTAGGGCACATCAATGAATCAAACACTAAAATTTTTAAGTGGCCCTTTTAGCTCAGTGGATGTCAGTGTCACACTTCCCTATTGCTGAAATCCTGTGATTGAAGTATTTACAACATTTCTCCCAGATCTCCCACGTTTAGAATGGGACTCAGACATTGTCATCAATATCTCGGAGAGATTAACCGTGGTTTTGCATTGACATTAAAGTACAAAGCAATGCCCTTATGATTATTTGTTTCTTTCTTATTCATTACAATTCGGTTGATCTGCTTCCTTTTTAGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGGTAAGCGCGAGTTATACTTTAGTAGATCTGTGTGTTGTTGATCTCTGCTGCTAGGTGCTTCATTTATTGTTTATTATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAACAAAAATCCCTAAAGGAGTCTGAGCGATTGGAGAAGGAAATTGTTGAAGTTCAAGAAATGAAGGTAATGGAAAAGAAAAGCTCATTTGATTTCCAATTTTGTAGAAACGAATTCTCACAGGCTTTTATTCTCATCAGAAAAAGATCAGTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTAACTGGAAATTAAGGTTGAAGCGCCAAAGTTTCAGAATTTAATTTCATAAACCTTCCGGGACTTGTTTTGCTGAAGATGTTTGGTCAGTAATAAAACAAACCAGATAGTTCCTCTGCAATTTGGTTGCATTTGCTTTCAGAATCATGGTGACGAAATTGATTAGAGAAATTGAGTTTTTCCTTGAAATGATATTGTGACAGTTCCAAATAACTCTTAAGGTACATTATCATGGAAAATGCATTTTTTTTAATGAGATTATATCGGCTTTCTTATCATTCTGAGATTGATAAAGAGAGGTTGCAAAGCTTTAAATTCA

mRNA sequence

AAGGGAAGAAGCCCAAGATTATGAACGAGTCATCTCCCAGACAAAAACAGTAGAACAATAGACGCCGATATCTGTGTTTTGAGCTCTCAACGAATCGCCCTCTCACATTTCCCATTGATTCTCTTCTTCTTTCCTCTGCCAAATCGAGAGAGAACAAAAAAGAAAATGAGCGGCACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGTCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAACAAAAATCCCTAAAGGAGTCTGAGCGATTGGAGAAGGAAATTGTTGAAGTTCAAGAAATGAAGAAAAAGATCAGTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTAACTGGAAATTAAGGTTGAAGCGCCAAAGTTTCAGAATTTAATTTCATAAACCTTCCGGGACTTGTTTTGCTGAAGATGTTTGGTCAGTAATAAAACAAACCAGATAGTTCCTCTGCAATTTGGTTGCATTTGCTTTCAGAATCATGGTGACGAAATTGATTAGAGAAATTGAGTTTTTCCTTGAAATGATATTGTGACAGTTCCAAATAACTCTTAAGGTACATTATCATGGAAAATGCATTTTTTTTAATGAGATTATATCGGCTTTCTTATCATTCTGAGATTGATAAAGAGAGGTTGCAAAGCTTTAAATTCA

Coding sequence (CDS)

ATGAGCGGCACCGTCAAGAAAGTGACCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCATCCCTTCGTCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAACAAAAATCCCTAAAGGAGTCTGAGCGATTGGAGAAGGAAATTGTTGAAGTTCAAGAAATGAAGAAAAAGATCAGTACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGCTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTAA

Protein sequence

MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKESERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY

Homology

[Close]

BLAST of Lsi04G000520 vs. ExPASy Swiss-Prot
Match: Q9FT52 (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-75
Identity = 139/168 (82.74%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDALLVELKEAEQKSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Lsi04G000520 vs. ExPASy TrEMBL
Match: A0A6J1HUL8 (ATP synthase subunit d, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466347 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. ExPASy TrEMBL
Match: A0A0A0KRL4 (ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. ExPASy TrEMBL
Match: A0A6J1G072 (ATP synthase subunit d, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449482 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. ExPASy TrEMBL
Match: A0A6J1CDD8 (ATP synthase subunit d, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010189 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.5e-84
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEF++LRRAF+EVNSTLQTKFSQEPE
Sbjct: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKE+VEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEVVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. ExPASy TrEMBL
Match: A0A5D3CDC0 (ATP synthase subunit d, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002870 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+EMK+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: XP_023541261.1 (ATP synthase subunit d, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: XP_038893313.1 (ATP synthase subunit d, mitochondrial [Benincasa hispida])

HSP 1 Score: 322.8 bits (826), Expect = 1.8e-84
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKVT+VAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE
Sbjct: 1   MSGTIKKVTNVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQEMKKKISTMTADEYF KHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQEMKKKISTMTADEYFVKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: XP_004142418.1 (ATP synthase subunit d, mitochondrial [Cucumis sativus] >KGN52290.1 hypothetical protein Csa_007810 [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 3.0e-84
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: XP_022966719.1 (ATP synthase subunit d, mitochondrial [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 3.0e-84
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. NCBI nr
Match: XP_022945159.1 (ATP synthase subunit d, mitochondrial [Cucurbita moschata] >KAG6573823.1 ATP synthase subunit d, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012890.1 ATP synthase subunit d, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.5 bits (820), Expect = 8.8e-84
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]

BLAST of Lsi04G000520 vs. TAIR 10
Match: AT3G52300.1 (ATP synthase D chain, mitochondrial )

HSP 1 Score: 283.9 bits (725), Expect = 8.5e-77
Identity = 139/168 (82.74%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDALLVELKEAEQKSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]

BLAST of Lsi04G000520 vs. TAIR 10
Match: AT3G52300.2 (ATP synthase D chain, mitochondrial )

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-46
Identity = 84/108 (77.78%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ DVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLV 109
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDAL++
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALVI 108

The following BLAST results are available for this feature:

BLAST of Lsi04G000520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FT52	1.2e-75	82.74	ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g523...	[more]

BLAST of Lsi04G000520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HUL8	1.5e-84	97.02	ATP synthase subunit d, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11146634...	[more]
A0A0A0KRL4	1.5e-84	97.02	ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540...	[more]
A0A6J1G072	4.3e-84	96.43	ATP synthase subunit d, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449...	[more]
A0A6J1CDD8	9.5e-84	95.24	ATP synthase subunit d, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A5D3CDC0	2.1e-83	95.83	ATP synthase subunit d, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Lsi04G000520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541261.1	1.4e-84	97.62	ATP synthase subunit d, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_038893313.1	1.8e-84	97.62	ATP synthase subunit d, mitochondrial [Benincasa hispida]	[more]
XP_004142418.1	3.0e-84	97.02	ATP synthase subunit d, mitochondrial [Cucumis sativus] >KGN52290.1 hypothetical...	[more]
XP_022966719.1	3.0e-84	97.02	ATP synthase subunit d, mitochondrial [Cucurbita maxima]	[more]
XP_022945159.1	8.8e-84	96.43	ATP synthase subunit d, mitochondrial [Cucurbita moschata] >KAG6573823.1 ATP syn...	[more]

BLAST of Lsi04G000520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52300.1	8.5e-77	82.74	ATP synthase D chain, mitochondrial	[more]
AT3G52300.2	2.0e-46	77.78	ATP synthase D chain, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..141
None	No IPR available	PANTHER	PTHR12700:SF18	ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL	coord: 1..168
IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	GENE3D	6.10.280.70		coord: 14..141 e-value: 4.4E-35 score: 122.3
IPR036228	ATP synthase, F0 complex, subunit D superfamily, mitochondrial	SUPERFAMILY	161065	ATP synthase D chain-like	coord: 15..131
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PIRSF	PIRSF005514	Mitoh_ATP-synt_D	coord: 9..168 e-value: 1.8E-39 score: 133.1
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PFAM	PF05873	Mt_ATP-synt_D	coord: 15..166 e-value: 8.8E-19 score: 67.9
IPR008689	ATP synthase, F0 complex, subunit D, mitochondrial	PANTHER	PTHR12700	ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000520.1	Lsi04G000520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000274	mitochondrial proton-transporting ATP synthase, stator stalk
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0015078	proton transmembrane transporter activity