Lsi04G000420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000420
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Annexin
Location	chr04: 575083 .. 577474 (+)
RNA-Seq Expression	Lsi04G000420
Synteny	Lsi04G000420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAACTCATCACAAAGCTTTCTCAACCAAACCACATTTAATTTAAAGCAAAATTGGTTGTGCCTTTTCACCTCTTTCTTTTGCAATGAAAACTGCTGCCATTTTTCTAGGCATTATGCTATCTTTGCTTTTGCTTCTTAACTTCTGCTATGCAGCAGAAGAAAGTGTTGATGAATTTCAGTCTGGGAAAGGTATTTTTTTTTTTTTTTTTTTTTTTTATAATTTTTTTGGCATTTTCAGGTTCTTTAGTCTTTGCTTGCTTTGCACCACCTCTTTTAATGAAAATTGTACTTCTCTGCACACATTTTATATTTTTTGTCTAGACAAAATTTATTATATGCCCTTTCACCTGCCTAGATACACAGGAATTAAGGATGGTTGAAAATAAAAGGGAATAAAATTGTTGGAAATCAAGAATGATTGTGTGTTGGTTGTGTATCGGTATGTTATTAAAATTTTATAGAACCAATTATCTTTGTATTTAATTTATAAAATTAATCATGGACACTTCTATAAAATTTTAATAAATTAATTGATAAACAATAAATTCAATTCAAAGTTTTGAGTAAAATTAATTATTTAATAATTAAATAATAATATTAATTAAATGATTAATTATAAGTATTTGTAATATGAGTGATTTATAATTAAAGTTACTTGATTACATAATTTGATGTATCAATTTGATGAGTTTATATAATTATGATATATTAATTAGTAAAACAATCAAAATTAATTTGAAAAAAAATAAATATAACATTGTGTCATTAAAAATTAATGAGTTATAATTAATCAATGATAAAATAATTATAACTATTACAAAATAATAATCCCATAATTATAATGATAATTAATTAGCTACATATATAATTTATTGAATCGATAGTATTAATGCATCAATTCTTTACGATTAATTAATTTATAAAATTGGAGTAGTTAAATTCAAATATTTTGATTATAATTTTAATATAATATTCTAAATTATAAATTTAAATAATCATATATTAATTAATTTTAATAATATATAGAATAAAATAATAAATTTATATATTAAAAGATGAGAGAGAGAGTGGACATCAAGAAAACCTACACTTTTGGATGAGTATCATTCATGAGTATAAAGAATAAATGAGAATAACAAGGGATGTGTATCCCTTATCCATTTCCACCCTTATTCCCATCCCAATTCCCTCAATCCAAATACCCTCTAAGAGGTCTTTGGGATGCCGAGTTAAGTTCTGAAATCTTGAGTTAGAAAGTCCGTATTTGGGGTGTAAAGTTGTAAGATGAAGTTACTTAAAATGTGCAAAAGAGAGAAAGAGGAGAAAATGAAGTTTCTCGATAAATGTGCAAACTTCAATAGTGAACACTATTGAAGTCGAGTTATTTATGAAGTCCGTGGGTCAAATATCCCCTAACTTTCTTGGTTTAGTGTGGTTTAACGTGAGGTCAAAATAGGAGGTGGAGAGATTTGAATCTTTAACCTCTTAGTCGCAAGTATGTGTCAAATTTAGTTGAGTTATATTCAGGTTGACCAATAACATATATTATTGTATTCTAATTTCATCTTAAGGTTACATGTTTCGGCTTGTGCTAATATTTAAACTGACATGGAGAGGATTGTTAGAGAATGTATTAGAGATTATGTAAGTTGATGCTATGATATTAGGTTAAATTATGACTCAATGTTCTCTCTTAGGAAAGAGAAAACCAAGTTATATAGTGTAATGAAGGGCATTTTGTTTATACACAGGTGGAGGTGGTGTGACAGGTAAGAATGGAGAAGAAGAAGAGCAAGAAGAGAAATTCAAGTTTCTTCATCACCATAAGCCATACTTGAAGAAACCATTTTTAAAGCCAATTCCATACAAGCATCCATTTCTGAAGAAACCAATTCCAGTTCATCCATTTCTGAAGAAGCCAATTCCGGTTCATCCATTCCTCAAGAAGCCATTTCCAAAGCCAACTAATCCACCAGTCTTCCACAGCCATCCTTGAAAACTACGTTGCATTTTCATATGCTATATAAGAATGAGAATGTAATTGTCTGTCACATAATTATGAAGTGAATTTTATATTAAAAAAAACAAGGGGTCAGTTCTATTATTATTATTATTATAATTTGTGTTAAAAGTGTAATATTGGATGAAATTATTTACAAATAAAGCTCTGTATCTGTGTTGTTTCTGTTAAAATGTCAGTGTAAGTTTCAGTTATGAAGCTTTTGCTTAACTCCTCTTCATTTTGATCTAAGAAATTCATGAGAGAGAGAGAGCTCTGTATCTGTGTTGTGTCACCTCTTAAGAGCTGGGACACACCCAATTTATGATCAAAAAGGTTTGGAAGTAAGTTGGAATAAATGGCAGCTCAGTCTTAAACTTAAAAGTTAAA

mRNA sequence

AACAAACTCATCACAAAGCTTTCTCAACCAAACCACATTTAATTTAAAGCAAAATTGGTTGTGCCTTTTCACCTCTTTCTTTTGCAATGAAAACTGCTGCCATTTTTCTAGGCATTATGCTATCTTTGCTTTTGCTTCTTAACTTCTGCTATGCAGCAGAAGAAAGTGTTGATGAATTTCAGTCTGGGAAAGGTGGAGGTGGTGTGACAGGTAAGAATGGAGAAGAAGAAGAGCAAGAAGAGAAATTCAAGTTTCTTCATCACCATAAGCCATACTTGAAGAAACCATTTTTAAAGCCAATTCCATACAAGCATCCATTTCTGAAGAAACCAATTCCAGTTCATCCATTTCTGAAGAAGCCAATTCCGGTTCATCCATTCCTCAAGAAGCCATTTCCAAAGCCAACTAATCCACCAGTCTTCCACAGCCATCCTTGAAAACTACGTTGCATTTTCATATGCTATATAAGAATGAGAATGTAATTGTCTGTCACATAATTATGAAGTGAATTTTATATTAAAAAAAACAAGGGGTCAGTTCTATTATTATTATTATTATAATTTGTGTTAAAAGTGTAATATTGGATGAAATTATTTACAAATAAAGCTCTGTATCTGTGTTGTTTCTGTTAAAATGTCAGTGTAAGTTTCAGTTATGAAGCTTTTGCTTAACTCCTCTTCATTTTGATCTAAGAAATTCATGAGAGAGAGAGAGCTCTGTATCTGTGTTGTGTCACCTCTTAAGAGCTGGGACACACCCAATTTATGATCAAAAAGGTTTGGAAGTAAGTTGGAATAAATGGCAGCTCAGTCTTAAACTTAAAAGTTAAA

Coding sequence (CDS)

ATGAAAACTGCTGCCATTTTTCTAGGCATTATGCTATCTTTGCTTTTGCTTCTTAACTTCTGCTATGCAGCAGAAGAAAGTGTTGATGAATTTCAGTCTGGGAAAGGTGGAGGTGGTGTGACAGGTAAGAATGGAGAAGAAGAAGAGCAAGAAGAGAAATTCAAGTTTCTTCATCACCATAAGCCATACTTGAAGAAACCATTTTTAAAGCCAATTCCATACAAGCATCCATTTCTGAAGAAACCAATTCCAGTTCATCCATTTCTGAAGAAGCCAATTCCGGTTCATCCATTCCTCAAGAAGCCATTTCCAAAGCCAACTAATCCACCAGTCTTCCACAGCCATCCTTGA

Protein sequence

MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHHKPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKPFPKPTNPPVFHSHP

Homology

[Close]

BLAST of Lsi04G000420 vs. ExPASy TrEMBL
Match: A0A5A7SY00 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 448

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 449 KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 508

[Close]

BLAST of Lsi04G000420 vs. ExPASy TrEMBL
Match: A0A5D3CG71 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 60

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 61  KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 120

[Close]

BLAST of Lsi04G000420 vs. ExPASy TrEMBL
Match: E5GCK5 (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 438

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 439 KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 498

[Close]

BLAST of Lsi04G000420 vs. ExPASy TrEMBL
Match: A0A1S3BG81 (proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC103489493 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 60

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 61  KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 120

[Close]

BLAST of Lsi04G000420 vs. ExPASy TrEMBL
Match: A0A0A0KWW0 (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           MKTA IFLGI+LS LLL+NFCYAAEESV EFQSGKG  GVT KNGEEE  +EKFKFL HH
Sbjct: 1   MKTACIFLGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEE--DEKFKFLLHH 60

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPI-------PVHPFLKKPFPKPTNPPVFH 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPI       PVHPF KKP     +PPVFH
Sbjct: 61  KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPI---DHPPVFH 118

[Close]

BLAST of Lsi04G000420 vs. NCBI nr
Match: XP_038893221.1 (uncharacterized protein LOC120082072 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 3.9e-46
Identity = 103/126 (81.75%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           MKTAAIFLGI+LSLLL +NFCYAAEESV EFQSGKG  GVT KNG  EEQEEKFKFLHHH
Sbjct: 1   MKTAAIFLGIILSLLLFVNFCYAAEESVTEFQSGKGAAGVTAKNG-GEEQEEKFKFLHHH 60

Query: 61  KPYLKKPFLKPIPYK----------HPFLKKPIPVHPFLKKPIPVHPFLKKPFPKPTNPP 117
           KPY KKPFLKP+PYK          HPFLKKPIPVHPFLKKPIPVHPFLKKPFPKP  PP
Sbjct: 61  KPYFKKPFLKPVPYKHPFLKKPIPVHPFLKKPIPVHPFLKKPIPVHPFLKKPFPKPIKPP 120

[Close]

BLAST of Lsi04G000420 vs. NCBI nr
Match: ADN34202.1 (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 438

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 439 KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 498

[Close]

BLAST of Lsi04G000420 vs. NCBI nr
Match: KAA0034746.1 (annexin [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 448

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 449 KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 508

[Close]

BLAST of Lsi04G000420 vs. NCBI nr
Match: XP_008446928.1 (PREDICTED: proline-rich 33 kDa extensin-related protein-like [Cucumis melo] >TYK09299.1 annexin [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 99/129 (76.74%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           M+TA IFLGI+LS LLL+NFCYAAEESV EFQ GKG  GVT KNG EEEQEEKFKFLHHH
Sbjct: 1   MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNG-EEEQEEKFKFLHHH 60

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHPFLKKPIPVHPFLKKP-------------FPKPT 117
           KPY KKPFLKPIPYKHPFLKKPIPVHPF KKPIPVHPFLKKP             F KP 
Sbjct: 61  KPYYKKPFLKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPI 120

[Close]

BLAST of Lsi04G000420 vs. NCBI nr
Match: KAG6601141.1 (hypothetical protein SDJN03_06374, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031940.1 hypothetical protein SDJN02_05982, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 92/117 (78.63%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MKTAAIFLGIMLSLLLLLNFCYAAEESVDEFQSGKGGGGVTGKNGEEEEQEEKFKFLHHH 60
           MKTA+IFLGI+LSLLL +NFC+A EE+V E  S +G  GV  KNG EE+QEEKF FLHHH
Sbjct: 1   MKTASIFLGIILSLLLFVNFCFAEEENVAELHSAQGAAGVAAKNG-EEDQEEKFMFLHHH 60

Query: 61  KPYLKKPFLKPIPYKHPFLKKPIPV-HPFLKKPIPVHPFLKKPFPKPTNPPVFHSHP 117
           KPYLKKPFLKPIPYKHPFLKKPIPV HPFLKKPIP+HPFLKKP PKP NPPVF +HP
Sbjct: 61  KPYLKKPFLKPIPYKHPFLKKPIPVHHPFLKKPIPIHPFLKKPVPKPLNPPVFATHP 116

The following BLAST results are available for this feature:

BLAST of Lsi04G000420 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G000420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SY00	1.5e-43	76.74	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 S...	[more]
A0A5D3CG71	1.5e-43	76.74	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 ...	[more]
E5GCK5	1.5e-43	76.74	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3BG81	1.5e-43	76.74	proline-rich 33 kDa extensin-related protein-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KWW0	1.7e-39	76.42	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus OX=3659 GN=Csa_5G623650 PE=4 ...	[more]

BLAST of Lsi04G000420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893221.1	3.9e-46	81.75	uncharacterized protein LOC120082072 [Benincasa hispida]	[more]
ADN34202.1	3.1e-43	76.74	annexin [Cucumis melo subsp. melo]	[more]
KAA0034746.1	3.1e-43	76.74	annexin [Cucumis melo var. makuwa]	[more]
XP_008446928.1	3.1e-43	76.74	PREDICTED: proline-rich 33 kDa extensin-related protein-like [Cucumis melo] >TYK...	[more]
KAG6601141.1	6.4e-41	78.63	hypothetical protein SDJN03_06374, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi04G000420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000420.1	Lsi04G000420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005509	calcium ion binding