Lsi04G000310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G000310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncytochrome c oxidase assembly factor 5
Locationchr04: 463388 .. 465670 (+)
RNA-Seq ExpressionLsi04G000310
SyntenyLsi04G000310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTGGTCAAGTGTCTTAGCGAATCTGATTGTGTAAAGGTCTTATATAATCATGTTCTCATTGTATATGACTGTCTTTATGTGTGTGGGTATGCAGACATGTATCTTGTGTATCAGTACTTGGATAATTTTATTATAGAATTGGCATCTGTTTTTCTGAAATGCATTTTTTACTCTTGGCAATCATTAACGGGTGTATTAGAACAATCTATCATGAAGAATGTGAACAAGGACGTATAGGGTAGTTGCTTTAATTCAACATGGTTTTCAGTCTCTTGTTGTTGCAATTTCAGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCATTAACTCCTTCTCCAGTGTCCTGCAGTCATTAATTCTTTGTTGATTAGATCCTAATTGGGCGACTGCTACTTCAAAGTATTCTAAAATACACCTCATGATACAGCAACATGGCAACTTGTAGTTTAAAATTATACGTGGTATTATATGATTGCATAGATTGATGTTAAGATAGTGGACGAAAGATGATTAGTCACTTCTTTATCTTCTAATCTCAATGGGAAGTAGAGAACGTCTGTGGGTGGAGATAGCCAAAGGGACATCCAAAGTAATGTTAAACATGAATGTTGGAAAATTTTCGTGGAAAGAAATGCTAGGTTTTTTTAAGACAGTGAGATACATGTTAGTGATCAAATTAGAAAATGAGGGAAGATACGTCTGTGAGATTTACTATAGTTGAGTTGAGTGTAACCAAAAGTCAGTAAATGAATTATGAAATGAGAACTCGAGAAGCTGGAATGTGCTGACTAGAAGGAACTTGACAGCACTTGAATTTAGTGAACTTAATGACCTGCTGGATTTTCTAGAAAATGAGTGAATTGGAGTGGCGTGGATTTATGAGAGATTGTAGACTTTCCCTTTTTGGGTTGAACATTTTTATTATAACCAAATGGATGCAATGGTGGTCTAGAAAGAAGCTCTATAAGGAAGTGTGAATAGAAAAATATCCCAAAAAAGTCTGCCCAGCTTGTTCTCGTGGACTTGACTTCTGAAAGATGAAGGCTCGATGTCCTTCAATGGTTTTGTTATAAAACTTTTGTACCCCTCAGCGTGCCTTTATGTTTGTAAGTAGGTTTCAGATTTTCAGTTTTTCTCACATCGTACGTTGGAAGAGAATATATTTCATCTTGTTTATGGATATCCCTTAAGGGGCAAAACAAACAAACGTTAGTGTAGAGTCTCTGGTTGAAAGAAACGACGGAGTTAAGATTGGATAAATTTTGAGTTTGCTAAATGTTACTGTTCTTACTAGATTTCTGTAGATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGTATATCCTTAAAGATAGTTTTTACCATATTAATGAAAAGTGCTTCCTGTTTCTAAACGAAAAGCAATTGAATATCAGTGGCATTCTATGTTAAATTTGTTTTTCCGAAGTCGTCAATTTTGTTAGATGTTACAAAGTTGATGTAATGCATCTCACAACACTCAGTGCATCTCAAAATTCCAGGTTGACATGAGGGCAAGGATTCGAGGGAACAAAGGTTATTGAATGAGGGGTGGAGTTGAGCAATTCCTTGAGTAGAATTTTGGAACTTTGAATGCCTGGAAGTTTGTCTGCAGTGACCTGTAAAATCTTGCCCTTCTGCATATATTCAGTAACATTTGACTTTCGATTTTTTCATCGCTGAAGAGTTTTTCCGTCAATCTGCTTACAGAAGCCAGTAGCCAAATATTTAGTCCTGAGTTAATAGTGATTGTGTTTTCTTATGTTTTGGATTCTTACATTAACTTTGCCATGGCTGTTCAATATTGAAGGTTTTTTTTACCATTACACGAGTACATACACTTCTAGAAGAAGGAAGGGGTATACTTTCACTTGATTGTTCAGTAACTTGTATTCTTCTCATGTTTACCTTCTTATAGGAAGATGTTTGTGTTGGTATCCAATTCGAGCATGGCTTAACTGAGTTTTCTTGTACTTATAAGCAAGTTTATATCGTTCTTTTAGGCTATGTTCATGGTTAAGTTGGTCTAGCTATTAAAGGTTTTACTTGAAATGATTTTCTAAAGACATTGGAAATTTTAGGATATGCTCCATACACTGCAGAATGA

mRNA sequence

ATGGAACTGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGATATGCTCCATACACTGCAGAATGA

Coding sequence (CDS)

ATGGAACTGGTTCAGAACAGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCTTGTATACCTAGCGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAATAATGCTCCCAATACCTGCAATTTGAGTCTAATTCATACTTCTAGAAGCGGTGCTTTTGAAATTCCATTAGGGACTGAGACTAACTGGCTGGCTTTATTTGGATATGCTCCATACACTGCAGAATGA

Protein sequence

MELVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQANNAPNTCNLSLIHTSRSGAFEIPLGTETNWLALFGYAPYTAE
Homology
[Close]
BLAST of Lsi04G000310 vs. ExPASy TrEMBL
Match: A0A6J1CDL1 (cytochrome c oxidase assembly factor 5 OS=Momordica charantia OX=3673 GN=LOC111010254 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. ExPASy TrEMBL
Match: E5GCJ7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]
BLAST of Lsi04G000310 vs. ExPASy TrEMBL
Match: A0A0A0KRS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623760 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. ExPASy TrEMBL
Match: A0A1S3BGA9 (cytochrome c oxidase assembly factor 5 OS=Cucumis melo OX=3656 GN=LOC103489506 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. ExPASy TrEMBL
Match: A0A6J1IEJ6 (cytochrome c oxidase assembly factor 5 OS=Cucurbita maxima OX=3661 GN=LOC111476521 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. NCBI nr
Match: KAG7031931.1 (hypothetical protein SDJN02_05973 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQA+
Sbjct: 24 VQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQAS 60

[Close]
BLAST of Lsi04G000310 vs. NCBI nr
Match: ADN34196.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 58

[Close]
BLAST of Lsi04G000310 vs. NCBI nr
Match: XP_008446948.1 (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_022139307.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_022139308.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_031741572.1 cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_031741573.1 cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_038889422.1 cytochrome c oxidase assembly factor 5 [Benincasa hispida] >KGN52313.1 hypothetical protein Csa_009226 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. NCBI nr
Match: XP_022956695.1 (cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cytochrome c oxidase assembly factor 5 [Cucurbita maxima] >XP_023534123.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >XP_023534138.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >KAG6601133.1 Cytochrome c oxidase assembly factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. NCBI nr
Match: XP_031405462.1 (mitochondrial protein pet191 homolog [Punica granatum] >PKI63304.1 hypothetical protein CRG98_016295 [Punica granatum])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 4  VQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          VQ R+YRECAGEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 24 VQKRSYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. TAIR 10
Match: AT1G10865.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-13
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 

Query: 5  QNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQAN 41
          + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ +
Sbjct: 25 EKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQVD 60

[Close]
BLAST of Lsi04G000310 vs. TAIR 10
Match: AT1G10865.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 9.3e-13
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 5  QNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQ 39
          + R+ R+C GEKSPCIPSECVGLRETYFNCKRGQ
Sbjct: 25 EKRSIRDCTGEKSPCIPSECVGLRETYFNCKRGQ 58

The following BLAST results are available for this feature:
BLAST of Lsi04G000310 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G000310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CDL17.2e-1394.59cytochrome c oxidase assembly factor 5 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
E5GCJ77.2e-13100.00Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
A0A0A0KRS47.2e-1394.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623760 PE=3 SV=1[more]
A0A1S3BGA97.2e-1394.59cytochrome c oxidase assembly factor 5 OS=Cucumis melo OX=3656 GN=LOC103489506 P... [more]
A0A6J1IEJ61.6e-1291.89cytochrome c oxidase assembly factor 5 OS=Cucurbita maxima OX=3661 GN=LOC1114765... [more]
BLAST of Lsi04G000310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031931.11.1e-1294.59hypothetical protein SDJN02_05973 [Cucurbita argyrosperma subsp. argyrosperma][more]
ADN34196.11.5e-12100.00hypothetical protein [Cucumis melo subsp. melo][more]
XP_008446948.11.5e-1294.59PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_022139307.1... [more]
XP_022956695.13.3e-1291.89cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cyto... [more]
XP_031405462.12.2e-1189.19mitochondrial protein pet191 homolog [Punica granatum] >PKI63304.1 hypothetical ... [more]
BLAST of Lsi04G000310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G10865.17.1e-1377.78FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G10865.29.3e-1382.35FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018793Cytochrome c oxidase assembly protein PET191PFAMPF10203Pet191_Ncoord: 4..41
e-value: 1.9E-7
score: 31.3
IPR018793Cytochrome c oxidase assembly protein PET191PANTHERPTHR28627CYTOCHROME C OXIDASE ASSEMBLY FACTOR 5coord: 4..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G000310.1Lsi04G000310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033617 mitochondrial cytochrome c oxidase assembly
cellular_component GO:0005739 mitochondrion