Lsi04G000130 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 207260 .. 207742 (+)
RNA-Seq Expression	Lsi04G000130
Synteny	Lsi04G000130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCAAGTCGCATGCGCACGTCAGGCTCCGCGCACCCTGCGCGCGAGCAACGTCAGACGCGCGGCCTGTCCCTCCACGCGCGCCTCGTCGTCCAGACCCCTCTGGACAGTCCTGGAAGCTTCTAGAAGGCTCGGGACAATGCCAGCGCCCACGCCCAAGACCCAGCAGCGCCTGGAAGGATCTGGGCGGCGCTGGACAGTGCCAGCGCCCACGAGAGAGCCCCAGCATGGCCCAGAAGGCTCCAGATGCCTCTGGACAGCGCCAGAACGTGCGCCACAGCCCTAGAAATGCCTGGAAGGATCTAGAAGGGGCGAGACAGTGCCAGCATGCTCGGGAAGGCACCAGACTTGTCTGGAAGGCTCGAGAAGGCCCTGGAACGTGTCAGGACACTTCCAGAAGATACCATGACGGTCAAGACAAGTGCCAGAAGGCTCTAGAACGCGCTGGAACCACCCAGAATGGGCCAGACCGACGCCAATAG

mRNA sequence

ATGCGCAAGTCGCATGCGCACGTCAGGCTCCGCGCACCCTGCGCGCGAGCAACGTCAGACGCGCGGCCTGTCCCTCCACGCGCGCCTCGTCGTCCAGACCCCTCTGGACAGTCCTGGAAGCTTCTAGAAGGCTCGGGACAATGCCAGCGCCCACGCCCAAGACCCAGCAGCGCCTGGAAGGATCTGGGCGGCGCTGGACAGTGCCAGCGCCCACGAGAGAGCCCCAGCATGGCCCAGAAGGCTCCAGATGCCTCTGGACAGCGCCAGAACGTGCGCCACAGCCCTAGAAATGCCTGGAAGGATCTAGAAGGGGCGAGACAGTGCCAGCATGCTCGGGAAGGCACCAGACTTGTCTGGAAGGCTCGAGAAGGCCCTGGAACGTGTCAGGACACTTCCAGAAGATACCATGACGGTCAAGACAAGTGCCAGAAGGCTCTAGAACGCGCTGGAACCACCCAGAATGGGCCAGACCGACGCCAATAG

Coding sequence (CDS)

ATGCGCAAGTCGCATGCGCACGTCAGGCTCCGCGCACCCTGCGCGCGAGCAACGTCAGACGCGCGGCCTGTCCCTCCACGCGCGCCTCGTCGTCCAGACCCCTCTGGACAGTCCTGGAAGCTTCTAGAAGGCTCGGGACAATGCCAGCGCCCACGCCCAAGACCCAGCAGCGCCTGGAAGGATCTGGGCGGCGCTGGACAGTGCCAGCGCCCACGAGAGAGCCCCAGCATGGCCCAGAAGGCTCCAGATGCCTCTGGACAGCGCCAGAACGTGCGCCACAGCCCTAGAAATGCCTGGAAGGATCTAGAAGGGGCGAGACAGTGCCAGCATGCTCGGGAAGGCACCAGACTTGTCTGGAAGGCTCGAGAAGGCCCTGGAACGTGTCAGGACACTTCCAGAAGATACCATGACGGTCAAGACAAGTGCCAGAAGGCTCTAGAACGCGCTGGAACCACCCAGAATGGGCCAGACCGACGCCAATAG

Protein sequence

MRKSHAHVRLRAPCARATSDARPVPPRAPRRPDPSGQSWKLLEGSGQCQRPRPRPSSAWKDLGGAGQCQRPRESPSMAQKAPDASGQRQNVRHSPRNAWKDLEGARQCQHAREGTRLVWKAREGPGTCQDTSRRYHDGQDKCQKALERAGTTQNGPDRRQ

Homology

The following BLAST results are available for this feature:

BLAST of Lsi04G000130 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G000130 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G000130 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G000130 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000130.1	Lsi04G000130.1	mRNA