Lsi04G000120 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	chr04: 191152 .. 191430 (+)
RNA-Seq Expression	Lsi04G000120
Synteny	Lsi04G000120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCTCGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

mRNA sequence

ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCTCGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

Coding sequence (CDS)

ATGGCATTCACAGTTCGAGGTCTGAAGGTTCCGCCGAACTCCGCCAGCCTTGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCATTGCCAGCAATCATGGACATTTACAACTTAGATGATGTCGCTACTGTTTCTCAGCTCCGTTCTACGATCGCCTCCGAGATCCGCAAGAATTCCCACGTCAGCGACCCTAAGGTCTTCTCGTTCCTGCAATTTACTCTATTTGCGTCTAAATTCTATATGATTTTGGGGGCGGCTTAA

Protein sequence

MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIRKNSHVSDPKVFSFLQFTLFASKFYMILGAA

Homology

[Close]

BLAST of Lsi04G000120 vs. ExPASy Swiss-Prot
Match: Q9LHI0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-21
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 3  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHVSDPKVFSFLQF 79
           N+H++DPKV   L F
Sbjct: 65 NNAHITDPKVIDLLIF 80

[Close]

BLAST of Lsi04G000120 vs. ExPASy TrEMBL
Match: A0A5A7SZJ9 (Peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007970 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.9e-36
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 227 MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 286

Query: 61  IRKNSHVSDPKVFSFLQFTLFAS 84
           IRKNSHV+DPKVF FLQFTLFAS
Sbjct: 287 IRKNSHVTDPKVFPFLQFTLFAS 309

[Close]

BLAST of Lsi04G000120 vs. ExPASy TrEMBL
Match: A0A1S3BH79 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489526 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. ExPASy TrEMBL
Match: A0A0A0KRV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. ExPASy TrEMBL
Match: A0A6J1H232 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111458871 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.7e-30
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDV T SQ+RSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. ExPASy TrEMBL
Match: A0A6J1JDJ2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111483420 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.6e-30
Identity = 68/78 (87.18%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDV T+S +RSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: KAA0034771.1 (peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 227 MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 286

Query: 61  IRKNSHVSDPKVFSFLQFTLFAS 84
           IRKNSHV+DPKVF FLQFTLFAS
Sbjct: 287 IRKNSHVTDPKVFPFLQFTLFAS 309

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: XP_038892169.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida])

HSP 1 Score: 144.1 bits (362), Expect = 6.2e-31
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: XP_008446979.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 6.2e-31
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV TVSQLRSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDV T+SQ+RSTIASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTISQIRSTIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. NCBI nr
Match: KAE8648872.1 (hypothetical protein Csa_008170 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 3.1e-30
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASE 60
          MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIMDIYNLDDVATVSQLRS IASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHVSDPKVFSFLQF 79
          IRKNSHV+DPKV   L F
Sbjct: 61 IRKNSHVTDPKVIDMLLF 78

[Close]

BLAST of Lsi04G000120 vs. TAIR 10
Match: AT3G12260.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 103.6 bits (257), Expect = 8.6e-23
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 3  FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSTIASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IMDIYNL DV   SQLR  I+++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHVSDPKVFSFLQF 79
           N+H++DPKV   L F
Sbjct: 65 NNAHITDPKVIDLLIF 80

The following BLAST results are available for this feature:

BLAST of Lsi04G000120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHI0	1.2e-21	63.16	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]

BLAST of Lsi04G000120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZJ9	6.9e-36	96.39	Peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A1S3BH79	3.0e-31	92.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=...	[more]
A0A0A0KRV0	1.5e-30	91.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=3 SV=1	[more]
A0A6J1H232	5.7e-30	88.46	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moscha...	[more]
A0A6J1JDJ2	9.6e-30	87.18	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima...	[more]

BLAST of Lsi04G000120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034771.1	1.4e-35	96.39	peptidyl-prolyl cis-trans isomerase CYP22 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038892169.1	6.2e-31	92.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]	[more]
XP_008446979.1	6.2e-31	92.31	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis...	[more]
XP_023552714.1	1.4e-30	89.74	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
KAE8648872.1	3.1e-30	91.03	hypothetical protein Csa_008170 [Cucumis sativus]	[more]

BLAST of Lsi04G000120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12260.1	8.6e-23	63.16	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 1..78
None	No IPR available	PANTHER	PTHR12964:SF4	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 6-LIKE	coord: 1..78
None	No IPR available	CDD	cd20266	Complex1_LYR_NDUFA6_LYRM6	coord: 17..72 e-value: 1.04148E-23 score: 83.7663

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000120.1	Lsi04G000120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity