Lsi03G021650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA double-strand break repair rad50 ATPase, putative isoform 1
Location	chr03: 32768909 .. 32769112 (-)
RNA-Seq Expression	Lsi03G021650
Synteny	Lsi03G021650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGCAAACCAAAGCTAGAAAATCTGAGAACGCTAGCAAGGGGATAGGCAACGTAACCCCTATTCAGGTCGCCTTCATTGTTGATAGATATCTCTCCGATAACTGTTACGCCGAAACGCGCTCTGTTTTTAGAGTTGAAGCTTCATCACTCATTGCAAATTCTCCCATCCAAGAGGTACAAGTTTCTGCTTATTTGTAG

mRNA sequence

ATGGGGAAGCAAACCAAAGCTAGAAAATCTGAGAACGCTAGCAAGGGGATAGGCAACGTAACCCCTATTCAGGTCGCCTTCATTGTTGATAGATATCTCTCCGATAACTGTTACGCCGAAACGCGCTCTGTTTTTAGAGTTGAAGCTTCATCACTCATTGCAAATTCTCCCATCCAAGAGGTACAAGTTTCTGCTTATTTGTAG

Coding sequence (CDS)

ATGGGGAAGCAAACCAAAGCTAGAAAATCTGAGAACGCTAGCAAGGGGATAGGCAACGTAACCCCTATTCAGGTCGCCTTCATTGTTGATAGATATCTCTCCGATAACTGTTACGCCGAAACGCGCTCTGTTTTTAGAGTTGAAGCTTCATCACTCATTGCAAATTCTCCCATCCAAGAGGTACAAGTTTCTGCTTATTTGTAG

Protein sequence

MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQEVQVSAYL

Homology

[Close]

BLAST of Lsi03G021650 vs. ExPASy TrEMBL
Match: A0A5A7TMN6 (DNA double-strand break repair rad50 ATPase, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001170 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-20
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARKS+NA+KGI NVTPIQVAFIVDRYLSDN Y ETRSVFRVEASSLIA SPIQE
Sbjct: 1  MGKQTKARKSDNAAKGIRNVTPIQVAFIVDRYLSDNSYVETRSVFRVEASSLIAKSPIQE 60

Query: 61 VQVS 65
             S
Sbjct: 61 APKS 64

[Close]

BLAST of Lsi03G021650 vs. ExPASy TrEMBL
Match: A0A1S3B5S4 (uncharacterized protein LOC103486335 OS=Cucumis melo OX=3656 GN=LOC103486335 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-20
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARKS+NA+KGI NVTPIQVAFIVDRYLSDN Y ETRSVFRVEASSLIA SPIQE
Sbjct: 1  MGKQTKARKSDNAAKGIRNVTPIQVAFIVDRYLSDNSYVETRSVFRVEASSLIAKSPIQE 60

Query: 61 VQVS 65
             S
Sbjct: 61 APKS 64

[Close]

BLAST of Lsi03G021650 vs. ExPASy TrEMBL
Match: A0A6J1F245 (uncharacterized protein LOC111441486 OS=Cucurbita moschata OX=3662 GN=LOC111441486 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARK+E A KGIGNVTPIQVAFIVD+YLSDN YAETRSVFRVEASSLIA SPIQE
Sbjct: 3  MGKQTKARKAEAAGKGIGNVTPIQVAFIVDKYLSDNNYAETRSVFRVEASSLIAKSPIQE 62

Query: 61 VQVS 65
             S
Sbjct: 63 APKS 66

[Close]

BLAST of Lsi03G021650 vs. ExPASy TrEMBL
Match: A0A6J1I1N0 (uncharacterized protein LOC111470082 OS=Cucurbita maxima OX=3661 GN=LOC111470082 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTK+RKSE+ASKG  NVTP+QVAFIVDRYLSDN YAE+RSVFRVEASSLIANSPIQE
Sbjct: 1  MGKQTKSRKSESASKGTANVTPMQVAFIVDRYLSDNNYAESRSVFRVEASSLIANSPIQE 60

Query: 61 VQVS 65
             S
Sbjct: 61 APKS 64

[Close]

BLAST of Lsi03G021650 vs. ExPASy TrEMBL
Match: A0A6J1J2B7 (uncharacterized protein LOC111482066 OS=Cucurbita maxima OX=3661 GN=LOC111482066 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-19
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARK+E A  GIGNVTPIQVAFIVD+YLSDN YAETRSVFRVEASSLIA SPIQE
Sbjct: 3  MGKQTKARKAEAAGNGIGNVTPIQVAFIVDKYLSDNNYAETRSVFRVEASSLIAKSPIQE 62

Query: 61 VQVS 65
             S
Sbjct: 63 APKS 66

[Close]

BLAST of Lsi03G021650 vs. NCBI nr
Match: XP_038905640.1 (uncharacterized protein LOC120091608 [Benincasa hispida])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARKSENASKG GNVTP+QVAFIVDRYLSDN YAETRS FR+EASSLIA SPIQE
Sbjct: 1  MGKQTKARKSENASKGTGNVTPVQVAFIVDRYLSDNNYAETRSFFRLEASSLIAKSPIQE 60

Query: 61 VQVS 65
             S
Sbjct: 61 APKS 64

[Close]

BLAST of Lsi03G021650 vs. NCBI nr
Match: XP_008442481.1 (PREDICTED: uncharacterized protein LOC103486335 [Cucumis melo] >KAA0044138.1 DNA double-strand break repair rad50 ATPase, putative isoform 1 [Cucumis melo var. makuwa] >TYK24999.1 DNA double-strand break repair rad50 ATPase, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARKS+NA+KGI NVTPIQVAFIVDRYLSDN Y ETRSVFRVEASSLIA SPIQE
Sbjct: 1  MGKQTKARKSDNAAKGIRNVTPIQVAFIVDRYLSDNSYVETRSVFRVEASSLIAKSPIQE 60

Query: 61 VQVS 65
             S
Sbjct: 61 APKS 64

[Close]

BLAST of Lsi03G021650 vs. NCBI nr
Match: XP_022934274.1 (uncharacterized protein LOC111441486 [Cucurbita moschata])

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARK+E A KGIGNVTPIQVAFIVD+YLSDN YAETRSVFRVEASSLIA SPIQE
Sbjct: 3  MGKQTKARKAEAAGKGIGNVTPIQVAFIVDKYLSDNNYAETRSVFRVEASSLIAKSPIQE 62

Query: 61 VQVS 65
             S
Sbjct: 63 APKS 66

[Close]

BLAST of Lsi03G021650 vs. NCBI nr
Match: KAG6580503.1 (hypothetical protein SDJN03_20505, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARK+E A KGIGNVTPIQVAFIVD+YLSDN YAETRSVFRVEASSLIA SPIQE
Sbjct: 1  MGKQTKARKAEAAGKGIGNVTPIQVAFIVDKYLSDNNYAETRSVFRVEASSLIAKSPIQE 60

Query: 61 VQVS 65
             S
Sbjct: 61 APKS 64

[Close]

BLAST of Lsi03G021650 vs. NCBI nr
Match: KAG7017253.1 (hypothetical protein SDJN02_19116, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-19
Identity = 55/64 (85.94%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGKQTKARK+E A KGIGNVTPIQVAFIVD+YLSDN YAETRSVFRVEASSLIA SPIQE
Sbjct: 3  MGKQTKARKAEAAGKGIGNVTPIQVAFIVDKYLSDNNYAETRSVFRVEASSLIAKSPIQE 62

Query: 61 VQVS 65
             S
Sbjct: 63 APKS 66

[Close]

BLAST of Lsi03G021650 vs. TAIR 10
Match: AT2G37960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 418 Blast hits to 247 proteins in 92 species: Archae - 0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          M +  +++ SE    G G VTPIQVAF+VDRYL DN +++TRS+FR EASSLI+NSP++E
Sbjct: 1  MARSNRSKTSERII-GNGEVTPIQVAFLVDRYLCDNRFSKTRSLFRSEASSLISNSPVRE 60

Query: 61 V 62
          V
Sbjct: 61 V 60

[Close]

BLAST of Lsi03G021650 vs. TAIR 10
Match: AT2G37960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 4.5e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          M +  +++ SE    G G VTPIQVAF+VDRYL DN +++TRS+FR EASSLI+NSP++E
Sbjct: 1  MARSNRSKTSERII-GNGEVTPIQVAFLVDRYLCDNRFSKTRSLFRSEASSLISNSPVRE 60

Query: 61 V 62
          V
Sbjct: 61 V 60

[Close]

BLAST of Lsi03G021650 vs. TAIR 10
Match: AT3G54060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 455 Blast hits to 322 proteins in 98 species: Archae - 0; Bacteria - 178; Metazoa - 88; Fungi - 75; Plants - 28; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGK ++++ S    K  G VTP QVAFIVDRYL DN ++ETR++FR EASSLI++SPI+ 
Sbjct: 1  MGKSSRSKGSNLIGK--GEVTPTQVAFIVDRYLHDNRFSETRALFRSEASSLISDSPIRN 59

Query: 61 V 62
          V
Sbjct: 61 V 59

[Close]

BLAST of Lsi03G021650 vs. TAIR 10
Match: AT3G54060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MGKQTKARKSENASKGIGNVTPIQVAFIVDRYLSDNCYAETRSVFRVEASSLIANSPIQE 60
          MGK ++++ S    K  G VTP QVAFIVDRYL DN ++ETR++FR EASSLI++SPI+ 
Sbjct: 1  MGKSSRSKGSNLIGK--GEVTPTQVAFIVDRYLHDNRFSETRALFRSEASSLISDSPIRN 59

Query: 61 V 62
          V
Sbjct: 61 V 59

The following BLAST results are available for this feature:

BLAST of Lsi03G021650 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMN6	8.6e-20	85.94	DNA double-strand break repair rad50 ATPase, putative isoform 1 OS=Cucumis melo ...	[more]
A0A1S3B5S4	8.6e-20	85.94	uncharacterized protein LOC103486335 OS=Cucumis melo OX=3656 GN=LOC103486335 PE=...	[more]
A0A6J1F245	1.5e-19	85.94	uncharacterized protein LOC111441486 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A6J1I1N0	2.5e-19	84.38	uncharacterized protein LOC111470082 OS=Cucurbita maxima OX=3661 GN=LOC111470082...	[more]
A0A6J1J2B7	5.6e-19	84.38	uncharacterized protein LOC111482066 OS=Cucurbita maxima OX=3661 GN=LOC111482066...	[more]

BLAST of Lsi03G021650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905640.1	1.0e-19	85.94	uncharacterized protein LOC120091608 [Benincasa hispida]	[more]
XP_008442481.1	1.8e-19	85.94	PREDICTED: uncharacterized protein LOC103486335 [Cucumis melo] >KAA0044138.1 DNA...	[more]
XP_022934274.1	3.0e-19	85.94	uncharacterized protein LOC111441486 [Cucurbita moschata]	[more]
KAG6580503.1	3.0e-19	85.94	hypothetical protein SDJN03_20505, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017253.1	3.0e-19	85.94	hypothetical protein SDJN02_19116, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi03G021650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37960.1	4.5e-13	59.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G37960.2	4.5e-13	59.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G54060.1	2.9e-12	59.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G54060.2	2.9e-12	59.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35117	MYOSIN-M HEAVY PROTEIN	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021650.1	Lsi03G021650.1	mRNA