Lsi03G021530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).
Location	chr03: 32682670 .. 32684246 (+)
RNA-Seq Expression	Lsi03G021530
Synteny	Lsi03G021530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAATTTAAGTTGATTTAATATTATAGGTCTAAGCATTTAAAAATTATACATATAATAGGTCGGTGGGTTGCTACGATTTGTTTCTATAAATAGGTGGGTATGCAATACAATGGCTTTCACTAATCCTCTCCGTCTCTACTCCCTGTTTTTTGTTCTCCTTCTCCATCTAACTTCCGGCGACGGCAAGTGATTGAAGTTTTGAAAGATGTCGGATAAGAAAACATCTGATGGGTCATCTTTTTCCTTCACTTCTGATCTATTTGGGACCAAAGACACTTCTTCACTCTCATCTAATCACATTTTTGGCCCTGTATTCTCATCTTCTTTCAAGGTATTATTCTTATTGCTGTAATCACTTCAATTTCCTTCATTCTTTCCATATATATGCACTTTTAATTAGTGGTTTTAACTTAAATTTGGGGATTTGCCTGTTTCCTTTGTCTTCTGTCTTGGGGAAGAAGGCCTCCCATCACTCCGAAGTCGGTGGCAAATCACAAGCTTTTTCATGCTCCCCCAAAACTGGTCACTTACATTACTCTTTTTCTCTTCCTATCACAAAAATTAGCCAAATTTTGTAAAAATGTATCTCAAATCTGCACCTAAATTAGCCAAATTTTGAGGAAGTTATTGCTAACTCTGTTTGTTTGTTTGTTCAGAAGGCAATTCCAAATATAAGGAATGCAAGAATCAGAGCACATCAAGCAGAGAAATGGTTTCGTTTTATCAGGAACAGAGAGCAGGCCCATGTCATCTTAGTTCTTCAATCTACTATGGTGGTCAGGATGTCTATACCCAAAACCCTGGAACTGGATTCAACTCCTCTGTGAGTTTTGCATTATTTTTTGCAAAAACCATCCATTGTTTTTCCTGAACAATAGTCTTCTAATGTATATTGGGATTTTCTCAGTTGAAGAGAGATGGAGGAGAAGATGATTCTGGTGGTGCTTCCAGAGGAAATTGGTGGCAAGGTATATGCCGATGAGGTGTTTGATTAAGTGTCGCAACCAAAATTTTATCAGTACAGCAGCCAAAATTTTGAGAACATTTACTCTTTTTTTTTTCATTGAAATTGGAAACGGACTTACGCTTCTTTATCTTCTTTCCACGATTTTCTAAAAATGCAGGGTCGCTGTACTACTGAGAATCTCACCCCGTCATCAAGGTTTTACTTTACAAATCCTATGGTTAACTGCTATAAATATTAAACTCAAAAGGCTAGTTAATTAGCTATTTGATCCTTTTATTCAGAGTACTTATTCTCTGCTTCATATGCTTTTTTGCAGGTGCATGATACATACTATTGCTATAAATATAGTAATGAAGATCAATGATATAGAATTTTACCTGCCAAAATGAGTTTAACTCATTAGTAATGACTTGTAATTATAAGTTAGAGGTTTAAATTTTCATACCTCACATTGTATTTAAGGACATGTTATTGCCTATTATTACATCATCCAACAAAGAACTGGTCATAGTTATCAAATAAATAATGTTTGAAGTGTATGTATATAAAATATATATTTGGTAAAGAAATGAATATGAAGACGAGGGAATCTGGAACTGTTTGCGCA

mRNA sequence

CAAAAATTTAAGTTGATTTAATATTATAGGTCTAAGCATTTAAAAATTATACATATAATAGGTCGGTGGGTTGCTACGATTTGTTTCTATAAATAGGTGGGTATGCAATACAATGGCTTTCACTAATCCTCTCCGTCTCTACTCCCTGTTTTTTGTTCTCCTTCTCCATCTAACTTCCGGCGACGGCAAGTGATTGAAGTTTTGAAAGATGTCGGATAAGAAAACATCTGATGGGTCATCTTTTTCCTTCACTTCTGATCTATTTGGGACCAAAGACACTTCTTCACTCTCATCTAATCACATTTTTGGCCCTGTATTCTCATCTTCTTTCAAGAAGGCAATTCCAAATATAAGGAATGCAAGAATCAGAGCACATCAAGCAGAGAAATGGTTTCGTTTTATCAGGAACAGAGAGCAGGCCCATGTCATCTTAGTTCTTCAATCTACTATGGTGTTGAAGAGAGATGGAGGAGAAGATGATTCTGGTGGTGCTTCCAGAGGAAATTGGTGGCAAGGTATATGCCGATGAGGTGTTTGATTAAGTGTCGCAACCAAAATTTTATCAGTACAGCAGCCAAAATTTTGAGAACATTTACTCTTTTTTTTTTCATTGAAATTGGAAACGGACTTACGCTTCTTTATCTTCTTTCCACGATTTTCTAAAAATGCAGGGTCGCTGTACTACTGAGAATCTCACCCCGTCATCAAGGTTTTACTTTACAAATCCTATGGTTAACTGCTATAAATATTAAACTCAAAAGGCTAGTTAATTAGCTATTTGATCCTTTTATTCAGAGTACTTATTCTCTGCTTCATATGCTTTTTTGCAGGTGCATGATACATACTATTGCTATAAATATAGTAATGAAGATCAATGATATAGAATTTTACCTGCCAAAATGAGTTTAACTCATTAGTAATGACTTGTAATTATAAGTTAGAGGTTTAAATTTTCATACCTCACATTGTATTTAAGGACATGTTATTGCCTATTATTACATCATCCAACAAAGAACTGGTCATAGTTATCAAATAAATAATGTTTGAAGTGTATGTATATAAAATATATATTTGGTAAAGAAATGAATATGAAGACGAGGGAATCTGGAACTGTTTGCGCA

Coding sequence (CDS)

ATGTCGGATAAGAAAACATCTGATGGGTCATCTTTTTCCTTCACTTCTGATCTATTTGGGACCAAAGACACTTCTTCACTCTCATCTAATCACATTTTTGGCCCTGTATTCTCATCTTCTTTCAAGAAGGCAATTCCAAATATAAGGAATGCAAGAATCAGAGCACATCAAGCAGAGAAATGGTTTCGTTTTATCAGGAACAGAGAGCAGGCCCATGTCATCTTAGTTCTTCAATCTACTATGGTGTTGAAGAGAGATGGAGGAGAAGATGATTCTGGTGGTGCTTCCAGAGGAAATTGGTGGCAAGGTATATGCCGATGA

Protein sequence

MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARIRAHQAEKWFRFIRNREQAHVILVLQSTMVLKRDGGEDDSGGASRGNWWQGICR

Homology

[Close]

BLAST of Lsi03G021530 vs. ExPASy TrEMBL
Match: A0A1S4DUM2 (uncharacterized protein LOC103486348 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486348 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 64/140 (45.71%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVF---SSSFKKA------------- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVF   SSSFK +             
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSSSSSFKNSEVGGKSHAVSYSP 60

Query: 61  ------IPNIRNARIRAHQAEKWFRFIRNREQAHV----------ILVLQS-----TMVL 104
                     +N    + +   +++  R     H+          I   Q+        L
Sbjct: 61  KTGSSKYKECKNGSTSSREVGSFYQEQRT-NPCHLSSSIYYGGQDIYTDQNPGTGFNSSL 120

[Close]

BLAST of Lsi03G021530 vs. ExPASy TrEMBL
Match: A0A1S4DUN5 (uncharacterized protein LOC103486348 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486348 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 64/144 (44.44%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARI--RAH-- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVFSSS      + +N+ +  ++H  
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSSSS----SFKNSEVGGKSHAV 60

Query: 61  ------QAEKWFRFIRN------------REQAHVILVLQSTMV---------------- 104
                 +    ++  +N            +EQ      L S++                 
Sbjct: 61  SYSPKTEGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIYTDQNPGTGF 120

[Close]

BLAST of Lsi03G021530 vs. ExPASy TrEMBL
Match: A0A1S3B5B7 (uncharacterized protein LOC103486348 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486348 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 64/144 (44.44%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARI--RAH-- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVFSSS   +    +N+ +  ++H  
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSS-SSSFKASQNSEVGGKSHAV 60

Query: 61  ------QAEKWFRFIRN------------REQAHVILVLQSTMV---------------- 104
                 +    ++  +N            +EQ      L S++                 
Sbjct: 61  SYSPKTEGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIYTDQNPGTGF 120

[Close]

BLAST of Lsi03G021530 vs. ExPASy TrEMBL
Match: A0A5D3DN19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001290 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.5e-15
Identity = 64/144 (44.44%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARI--RAH-- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVFSSS   +    +N+ +  ++H  
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSS-SSSFKASQNSEVGGKSHAV 60

Query: 61  ------QAEKWFRFIRN------------REQAHVILVLQSTMV---------------- 104
                 +    ++  +N            +EQ      L S++                 
Sbjct: 61  SYSPKTEGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIYTDQNPGTGF 120

[Close]

BLAST of Lsi03G021530 vs. ExPASy TrEMBL
Match: A0A1S3B5T7 (uncharacterized protein LOC103486348 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486348 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-15
Identity = 64/143 (44.76%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARI--RAH-- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVFSSS   +    +N+ +  ++H  
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSS-SSSFKASQNSEVGGKSHAV 60

Query: 61  -----QAEKWFRFIRN------------REQAHVILVLQSTMV----------------- 104
                     ++  +N            +EQ      L S++                  
Sbjct: 61  SYSPKTGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIYTDQNPGTGFN 120

[Close]

BLAST of Lsi03G021530 vs. NCBI nr
Match: XP_038905457.1 (uncharacterized protein LOC120091479 isoform X2 [Benincasa hispida] >XP_038905459.1 uncharacterized protein LOC120091479 isoform X2 [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 64/142 (45.07%), Postives = 79/142 (55.63%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARIRAH---- 60
           MS+KK SDGSSFSFTSDLFGT+DTS LSS HIFGP++SSSFK +  +    + +A     
Sbjct: 1   MSEKKASDGSSFSFTSDLFGTRDTSDLSSTHIFGPIYSSSFKASQHSEVGGKSKAFSCSL 60

Query: 61  --QAEKWFRFIRN------------REQAHVILVLQSTMV------------------LK 107
             +    ++  +N            +EQ      L S++                   LK
Sbjct: 61  KTEGTSEYKECKNQSTSSREMDSFYQEQRTDPCHLSSSIYYGGRDVYTQNPGTGFNSSLK 120

[Close]

BLAST of Lsi03G021530 vs. NCBI nr
Match: XP_038905456.1 (uncharacterized protein LOC120091479 isoform X1 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 62/139 (44.60%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARIRAH---- 60
           MS+KK SDGSSFSFTSDLFGT+DTS LSS HIFGP++SSSFK +  +    + +A     
Sbjct: 1   MSEKKASDGSSFSFTSDLFGTRDTSDLSSTHIFGPIYSSSFKASQHSEVGGKSKAFSCSL 60

Query: 61  --QAEKWFRFIRN------------REQAHVILVLQSTMV------------------LK 104
             +    ++  +N            +EQ      L S++                   LK
Sbjct: 61  KTEGTSEYKECKNQSTSSREMDSFYQEQRTDPCHLSSSIYYGGRDVYTQNPGTGFNSSLK 120

[Close]

BLAST of Lsi03G021530 vs. NCBI nr
Match: XP_038905460.1 (uncharacterized protein LOC120091479 isoform X3 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 62/138 (44.93%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARIRAHQAE- 60
           MS+KK SDGSSFSFTSDLFGT+DTS LSS HIFGP++SSSFK +  +    + +A     
Sbjct: 1   MSEKKASDGSSFSFTSDLFGTRDTSDLSSTHIFGPIYSSSFKASQHSEVGGKSKAFSCSL 60

Query: 61  ----KWFRFIRN------------REQAHVILVLQSTMV------------------LKR 104
                 ++  +N            +EQ      L S++                   LKR
Sbjct: 61  KTGTSEYKECKNQSTSSREMDSFYQEQRTDPCHLSSSIYYGGRDVYTQNPGTGFNSSLKR 120

[Close]

BLAST of Lsi03G021530 vs. NCBI nr
Match: XP_016899678.1 (PREDICTED: uncharacterized protein LOC103486348 isoform X3 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 64/144 (44.44%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVFSSSFKKAIPNIRNARI--RAH-- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVFSSS      + +N+ +  ++H  
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSSSS----SFKNSEVGGKSHAV 60

Query: 61  ------QAEKWFRFIRN------------REQAHVILVLQSTMV---------------- 104
                 +    ++  +N            +EQ      L S++                 
Sbjct: 61  SYSPKTEGSSKYKECKNGSTSSREVGSFYQEQRTNPCHLSSSIYYGGQDIYTDQNPGTGF 120

[Close]

BLAST of Lsi03G021530 vs. NCBI nr
Match: XP_016899679.1 (PREDICTED: uncharacterized protein LOC103486348 isoform X4 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 64/140 (45.71%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 1   MSDKKTSDGSSFSFTSDLFGTKDTSSLSSNHIFGPVF---SSSFKKA------------- 60
           MS+KK SDGSSFSFTSDLFG +DTSSLSSNHIFGPVF   SSSFK +             
Sbjct: 1   MSEKKASDGSSFSFTSDLFGIRDTSSLSSNHIFGPVFSSSSSSFKNSEVGGKSHAVSYSP 60

Query: 61  ------IPNIRNARIRAHQAEKWFRFIRNREQAHV----------ILVLQS-----TMVL 104
                     +N    + +   +++  R     H+          I   Q+        L
Sbjct: 61  KTGSSKYKECKNGSTSSREVGSFYQEQRT-NPCHLSSSIYYGGQDIYTDQNPGTGFNSSL 120

[Close]

BLAST of Lsi03G021530 vs. TAIR 10
Match: AT5G02020.1 (Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 40/135 (29.63%), Postives = 56/135 (41.48%), Query Frame = 0


Query: 6   TSDGSSFSFTSDLFGTKDT-SSLSSNHIFGPVFSSSFK---------------------- 65
           +S  SS S TS+LFG+++  SS SS+ I G +F    K                      
Sbjct: 11  SSPCSSSSLTSELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVRQETVTGGCWNEKTS 70

Query: 66  KAIPNIRNARIRAHQAEKWFRFIRNREQAHVILVL--------------QSTMVLKRDGG 104
           K   N+   R +       ++  +  +  H+   +               S    K+DGG
Sbjct: 71  KTGGNVDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQPQNSTSNSTNKKDGG 130

The following BLAST results are available for this feature:

BLAST of Lsi03G021530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DUM2	2.7e-15	45.71	uncharacterized protein LOC103486348 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DUN5	2.7e-15	44.44	uncharacterized protein LOC103486348 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B5B7	3.5e-15	44.44	uncharacterized protein LOC103486348 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3DN19	3.5e-15	44.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5T7	5.9e-15	44.76	uncharacterized protein LOC103486348 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lsi03G021530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905457.1	2.6e-17	45.07	uncharacterized protein LOC120091479 isoform X2 [Benincasa hispida] >XP_03890545...	[more]
XP_038905456.1	1.1e-15	44.60	uncharacterized protein LOC120091479 isoform X1 [Benincasa hispida]	[more]
XP_038905460.1	1.1e-15	44.93	uncharacterized protein LOC120091479 isoform X3 [Benincasa hispida]	[more]
XP_016899678.1	5.5e-15	44.44	PREDICTED: uncharacterized protein LOC103486348 isoform X3 [Cucumis melo]	[more]
XP_016899679.1	5.5e-15	45.71	PREDICTED: uncharacterized protein LOC103486348 isoform X4 [Cucumis melo]	[more]

BLAST of Lsi03G021530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02020.1	2.7e-04	29.63	Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine ric...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021530.1	Lsi03G021530.1	mRNA