Lsi03G021200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr03: 32433266 .. 32435214 (-)
RNA-Seq Expression	Lsi03G021200
Synteny	Lsi03G021200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAACCCAAAGGGGTTTGTTTTGTAATTGGAAGTGTAGAGGTTCTTTGTATGTTGCATGAAGAAGGCTTTTCTTGTCTTGTACCATTTGGATTTTGTCTGTGACAAGGGACTGGACACTGCATATTCCGCTGGAAAGTGCAAAGGGTGTTTGATTTTACCCTAATAAGATTACACCTTTGGCCACGAGAGATTAGAAAGAAAAAAAAATCTACAGGTTTGTAATATCCATGTTTCTCAGTTAGATTGAGATATTTTGTTGAGTTTTTTTTTCTTCTTCTTCTTCTTTTGAGGCCAACGATTAACCACATCAAAAACAAACAACCAACTACCCTTAACCTCATCTTTAAAAACATCTTTCCATGAGATGAAGTCAAAGGTGTAGTAGCATGAGTGGATTTGTTCTCTTTTTTATCACAATATATCTGTCGTTTTTGTATTGTGATGGATTTGAAAATTAGAGATATCATTGCAATCGTTTCTCATACATCTAACAATATAGAACTACCAATTGGTCTTGTCAAATATTTTGGGATAATTATACGGATGATTCAAAATATTAGGTTGGAATGAGATTTTGACCTATTTTCTAAATTTCAAGTTTTTTGTCGTTTTGCTTTCGTCATATACGGGTAAAATGGAACTTCGTGGAGGTAAATAACTTAATGGGCTTTCCTCACTCTTTCGATCTCTCTCTCTTGCCCGCGACAACTCAATCTCTTCACACTCTCTTGCTTTTGTAATGCTCATCCATTTTCATCTCCTCTAAGTTTCAAACAAAGGGGCATAATCCATTTTAGACTTTTCTTTTGTTATTATTATTTTTGGGTTTCTATACAATTTTCTCAAATATTTTCTCGATTTTGAAAGACAAAATAAGAAGCGAGTTAGTCCAACCCAAAAGAATTTGACTCCATATGAAAATCCAGATGGTGGGCCATCCTTATCTAAACAATCAGAACCCGAAGTCCGACGTAGCCTTATCCAGATTTCAATTTCAAAAACACTCTGTATCCTTTCGAATCGAACCACCAAAATATAAGAAAAACTCTCTTACTGATCTTCCTCCATCTCAGAATTCAGCTTCTGTTTCAGCCCTCTTCAAAACATGGCATCCTTATGTTCATTTCCTCGCATTTCTTCTACCGAACCCATCAAACAACCGCCCACCGCCGCCCCTTTTCCGTCCTCCAATCACCCAATAAGACCGTCGGCGCTCTCCTTCCGTCAAATTACCCGCAAGCACAAGAGAATTTCTACAGTGGTCGCCGCCGTCGGAGACGTCTCCGCCGACGGCACCACCTACTTGATCGCCGGCGCCATCGCTGTGGCTCTCGTCGGAACTGCCTTCCCTATCCTCTTCTCTCGCAAAGATCTGTAAGCAAAATTAAATTAACAAATTCGGTTTATTATCATGAAATTTTCCATGTCTCTGCAGTGGGATTCTGTTTCACAACATTAATTAAACTAACTTCCCATCTGCAATGCTTTAAAGAGGGATTTTAAATTCCAATGGTTGAGGTTTTAATTTTGTGGTCTGGTCCTCCGTAGGTGTCCGGAATGTGACGGCGCGGGGTTTGTCCGGCGATCGGAGGCGGCGCTGAGGGCAAATGCGGCTCGGAAAGACCAAACTCAAATCGTTTGTGCTCGTTGCAATGGCCTTGGGAAGCTCAACCAAGTGGACAAATAGATTAAAACCTGCTTTTTAGGCGGCTTTGTTCTCATATTATTACTGTTTTTTCCCCTTGGTAAATTGCATACATTATAAATGTGAATGTAATAAAATATTTTTAATATGTTTTTAGTCCATGTATTTTGAGATTTATTATTCTGAAATGAAGAATAGAGTTGATGAAAGTGGTGCTTTGGCAAGGCATTTAAGAATAGTCTCTTTTCTATTTTGTCCTCATGTTATAAATCCAGTTCTTGTCTGTTATGTTACTAAATTAT

mRNA sequence

ATAAACCCAAAGGGGTTTGTTTTGTAATTGGAAGTGTAGAGGTTCTTTGTATGTTGCATGAAGAAGGCTTTTCTTGTCTTGTACCATTTGGATTTTGTCTGTGACAAGGGACTGGACACTGCATATTCCGCTGGAAAGTGCAAAGGGTGTTTGATTTTACCCTAATAAGATTACACCTTTGGCCACGAGAGATTAGAAAGAAAAAAAAATCTACAGGTTTGTAATATCCATGTTTCTCAGTTAGATTGAGATATTTTGTTGAGTTTTTTTTTCTTCTTCTTCTTCTTTTGAGGCCAACGATTAACCACATCAAAAACAAACAACCAACTACCCTTAACCTCATCTTTAAAAACATCTTTCCATGAGATGAAGTCAAAGGTGTAGTAGCATGAGTGGATTTGTTCTCTTTTTTATCACAATATATCTGTCGTTTTTGTATTGTGATGGATTTGAAAATTAGAGATATCATTGCAATCGTTTCTCATACATCTAACAATATAGAACTACCAATTGGTCTTGTCAAATATTTTGGGATAATTATACGGATGATTCAAAATATTAGGTTGGAATGAGATTTTGACCTATTTTCTAAATTTCAAGTTTTTTGTCGTTTTGCTTTCGTCATATACGGGTAAAATGGAACTTCGTGGAGGTAAATAACTTAATGGGCTTTCCTCACTCTTTCGATCTCTCTCTCTTGCCCGCGACAACTCAATCTCTTCACACTCTCTTGCTTTTGTAATGCTCATCCATTTTCATCTCCTCTAAGTTTCAAACAAAGGGGCATAATCCATTTTAGACTTTTCTTTTGTTATTATTATTTTTGGGTTTCTATACAATTTTCTCAAATATTTTCTCGATTTTGAAAGACAAAATAAGAAGCGAGTTAGTCCAACCCAAAAGAATTTGACTCCATATGAAAATCCAGATGGTGGGCCATCCTTATCTAAACAATCAGAACCCGAAGTCCGACGTAGCCTTATCCAGATTTCAATTTCAAAAACACTCTGTATCCTTTCGAATCGAACCACCAAAATATAAGAAAAACTCTCTTACTGATCTTCCTCCATCTCAGAATTCAGCTTCTGTTTCAGCCCTCTTCAAAACATGGCATCCTTATGTTCATTTCCTCGCATTTCTTCTACCGAACCCATCAAACAACCGCCCACCGCCGCCCCTTTTCCGTCCTCCAATCACCCAATAAGACCGTCGGCGCTCTCCTTCCGTCAAATTACCCGCAAGCACAAGAGAATTTCTACAGTGGTCGCCGCCGTCGGAGACGTCTCCGCCGACGGCACCACCTACTTGATCGCCGGCGCCATCGCTGTGGCTCTCGTCGGAACTGCCTTCCCTATCCTCTTCTCTCGCAAAGATCTGTGTCCGGAATGTGACGGCGCGGGGTTTGTCCGGCGATCGGAGGCGGCGCTGAGGGCAAATGCGGCTCGGAAAGACCAAACTCAAATCGTTTGTGCTCGTTGCAATGGCCTTGGGAAGCTCAACCAAGTGGACAAATAGATTAAAACCTGCTTTTTAGGCGGCTTTGTTCTCATATTATTACTGTTTTTTCCCCTTGGTAAATTGCATACATTATAAATGTGAATGTAATAAAATATTTTTAATATGTTTTTAGTCCATGTATTTTGAGATTTATTATTCTGAAATGAAGAATAGAGTTGATGAAAGTGGTGCTTTGGCAAGGCATTTAAGAATAGTCTCTTTTCTATTTTGTCCTCATGTTATAAATCCAGTTCTTGTCTGTTATGTTACTAAATTAT

Coding sequence (CDS)

ATGGCATCCTTATGTTCATTTCCTCGCATTTCTTCTACCGAACCCATCAAACAACCGCCCACCGCCGCCCCTTTTCCGTCCTCCAATCACCCAATAAGACCGTCGGCGCTCTCCTTCCGTCAAATTACCCGCAAGCACAAGAGAATTTCTACAGTGGTCGCCGCCGTCGGAGACGTCTCCGCCGACGGCACCACCTACTTGATCGCCGGCGCCATCGCTGTGGCTCTCGTCGGAACTGCCTTCCCTATCCTCTTCTCTCGCAAAGATCTGTGTCCGGAATGTGACGGCGCGGGGTTTGTCCGGCGATCGGAGGCGGCGCTGAGGGCAAATGCGGCTCGGAAAGACCAAACTCAAATCGTTTGTGCTCGTTGCAATGGCCTTGGGAAGCTCAACCAAGTGGACAAATAG

Protein sequence

MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIVCARCNGLGKLNQVDK

Homology

[Close]

BLAST of Lsi03G021200 vs. ExPASy TrEMBL
Match: A0A0A0LDN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734100 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.7e-60
Identity = 122/135 (90.37%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLCSFPRISSTEPIKQ P  APFP SNH I+PS LS RQ +R HKRISTVVAAVGDVS
Sbjct: 1   MASLCSFPRISSTEPIKQSPAVAPFPPSNHSIKPSTLSLRQSSRNHKRISTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           +DGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSE+ALRANAARKDQTQIV
Sbjct: 61  SDGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSESALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. ExPASy TrEMBL
Match: A0A6J1F9E5 (uncharacterized protein LOC111442008 OS=Cucurbita moschata OX=3662 GN=LOC111442008 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH+RISTVVAA+GDVS
Sbjct: 1   MASLCTFPRISSTEPIKQTPAAAPFPPSNQPMRPSALSLRQSSSKHRRISTVVAAIGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           ADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFVRRS AALRANAARKDQTQIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. ExPASy TrEMBL
Match: A0A1S3B5E7 (uncharacterized protein LOC103486375 OS=Cucumis melo OX=3656 GN=LOC103486375 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.2e-59
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLCSFPRISSTEPIKQ P  APFP SNHPIRPS LS RQ +R HKRISTVVAAVGDVS
Sbjct: 1   MASLCSFPRISSTEPIKQSPATAPFPPSNHPIRPSTLSLRQSSRNHKRISTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           +DGTTYLIAGAIAVALVGTAFPI FSRKDLCPEC+GAGFVRRS +ALRANAARKDQTQIV
Sbjct: 61  SDGTTYLIAGAIAVALVGTAFPIFFSRKDLCPECEGAGFVRRSGSALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. ExPASy TrEMBL
Match: A0A6J1J3Y5 (uncharacterized protein LOC111482446 OS=Cucurbita maxima OX=3661 GN=LOC111482446 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH R STVVAAVGDVS
Sbjct: 1   MASLCTFPRISSTEPIKQTPAAAPFPPSNQPMRPSALSLRQSSGKHWRTSTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           ADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFVRRS AALRANAARKDQTQIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. ExPASy TrEMBL
Match: A0A6J1I3R1 (uncharacterized protein LOC111470276 OS=Cucurbita maxima OX=3661 GN=LOC111470276 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 114/135 (84.44%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLCSFPRISS +PIK  P AAPFP SNHP RPSALS RQ +R  KR ST+VAA+GDVS
Sbjct: 1   MASLCSFPRISSADPIKH-PAAAPFPPSNHPKRPSALSLRQSSRNQKRTSTIVAAIGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           ADGTTYLIAGA+AVALVGTAFPILFSRKDLCP CDGAGFVR+S AALRANAARKDQ QIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPVCDGAGFVRKSGAALRANAARKDQAQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           C+RCNGLGKLNQVDK
Sbjct: 121 CSRCNGLGKLNQVDK 134

[Close]

BLAST of Lsi03G021200 vs. NCBI nr
Match: XP_038905250.1 (uncharacterized protein LOC120091333 [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALS RQI+ KHKRIS VVAAVGDVS
Sbjct: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSLRQISPKHKRISVVVAAVGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           ADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFVRRS AALRANAARKDQTQIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. NCBI nr
Match: XP_004137792.1 (uncharacterized protein LOC101209846 [Cucumis sativus] >KGN58857.1 hypothetical protein Csa_002363 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 122/135 (90.37%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLCSFPRISSTEPIKQ P  APFP SNH I+PS LS RQ +R HKRISTVVAAVGDVS
Sbjct: 1   MASLCSFPRISSTEPIKQSPAVAPFPPSNHSIKPSTLSLRQSSRNHKRISTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           +DGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSE+ALRANAARKDQTQIV
Sbjct: 61  SDGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSESALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. NCBI nr
Match: XP_023528629.1 (uncharacterized protein LOC111791489 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 2.7e-59
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH+RISTVVAA+GDVS
Sbjct: 60  MASLCTFPRISSTEPIKQTPAAAPFPPSNQPMRPSALSLRQSSSKHRRISTVVAAIGDVS 119

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           ADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFVRRS AALRANAARKDQTQIV
Sbjct: 120 ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 179

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 180 CARCNGLGKLNQVDK 194

[Close]

BLAST of Lsi03G021200 vs. NCBI nr
Match: XP_022935020.1 (uncharacterized protein LOC111442008 [Cucurbita moschata] >XP_022935021.1 uncharacterized protein LOC111442008 [Cucurbita moschata] >KAG6580531.1 hypothetical protein SDJN03_20533, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017282.1 hypothetical protein SDJN02_19145 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 2.7e-59
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLC+FPRISSTEPIKQ P AAPFP SN P+RPSALS RQ + KH+RISTVVAA+GDVS
Sbjct: 1   MASLCTFPRISSTEPIKQTPAAAPFPPSNQPMRPSALSLRQSSSKHRRISTVVAAIGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           ADGTTYLIAGA+AVALVGTAFPILFSRKDLCPECDGAGFVRRS AALRANAARKDQTQIV
Sbjct: 61  ADGTTYLIAGAVAVALVGTAFPILFSRKDLCPECDGAGFVRRSGAALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. NCBI nr
Match: XP_008442527.1 (PREDICTED: uncharacterized protein LOC103486375 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-59
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MASLCSFPRISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVS 60
           MASLCSFPRISSTEPIKQ P  APFP SNHPIRPS LS RQ +R HKRISTVVAAVGDVS
Sbjct: 1   MASLCSFPRISSTEPIKQSPATAPFPPSNHPIRPSTLSLRQSSRNHKRISTVVAAVGDVS 60

Query: 61  ADGTTYLIAGAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIV 120
           +DGTTYLIAGAIAVALVGTAFPI FSRKDLCPEC+GAGFVRRS +ALRANAARKDQTQIV
Sbjct: 61  SDGTTYLIAGAIAVALVGTAFPIFFSRKDLCPECEGAGFVRRSGSALRANAARKDQTQIV 120

Query: 121 CARCNGLGKLNQVDK 136
           CARCNGLGKLNQVDK
Sbjct: 121 CARCNGLGKLNQVDK 135

[Close]

BLAST of Lsi03G021200 vs. TAIR 10
Match: AT5G02160.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34
Identity = 81/126 (64.29%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 10  ISSTEPIKQPPTAAPFPSSNHPIRPSALSFRQITRKHKRISTVVAAVGDVSADGTTYLIA 69
           +SST  +K   +    PS N+ I P          K    S VVAAVGDVS+DGT YLI 
Sbjct: 12  VSSTNFLKHSSSWGS-PSPNNVILPK--------NKRSSSSVVVAAVGDVSSDGTIYLIG 71

Query: 70  GAIAVALVGTAFPILFSRKDLCPECDGAGFVRRSEAALRANAARKDQTQIVCARCNGLGK 129
           GAIAVALVGTAFPILF RKD CPECDGAGFVR+    LRANAARKD  QIVCA CNGLGK
Sbjct: 72  GAIAVALVGTAFPILFKRKDTCPECDGAGFVRKGGVTLRANAARKDLPQIVCANCNGLGK 128

Query: 130 LNQVDK 136
           LNQ+DK
Sbjct: 132 LNQIDK 128

The following BLAST results are available for this feature:

BLAST of Lsi03G021200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDN8	7.7e-60	90.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734100 PE=4 SV=1	[more]
A0A6J1F9E5	1.3e-59	89.63	uncharacterized protein LOC111442008 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A1S3B5E7	2.2e-59	89.63	uncharacterized protein LOC103486375 OS=Cucumis melo OX=3656 GN=LOC103486375 PE=...	[more]
A0A6J1J3Y5	1.9e-58	89.63	uncharacterized protein LOC111482446 OS=Cucurbita maxima OX=3661 GN=LOC111482446...	[more]
A0A6J1I3R1	1.7e-54	84.44	uncharacterized protein LOC111470276 OS=Cucurbita maxima OX=3661 GN=LOC111470276...	[more]

BLAST of Lsi03G021200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905250.1	1.8e-63	95.56	uncharacterized protein LOC120091333 [Benincasa hispida]	[more]
XP_004137792.1	1.6e-59	90.37	uncharacterized protein LOC101209846 [Cucumis sativus] >KGN58857.1 hypothetical ...	[more]
XP_023528629.1	2.7e-59	89.63	uncharacterized protein LOC111791489 [Cucurbita pepo subsp. pepo]	[more]
XP_022935020.1	2.7e-59	89.63	uncharacterized protein LOC111442008 [Cucurbita moschata] >XP_022935021.1 unchar...	[more]
XP_008442527.1	4.6e-59	89.63	PREDICTED: uncharacterized protein LOC103486375 [Cucumis melo]	[more]

BLAST of Lsi03G021200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02160.1	1.9e-34	64.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..33
None	No IPR available	PANTHER	PTHR36389	OS05G0110100 PROTEIN	coord: 1..135
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 88..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021200.1	Lsi03G021200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane