Lsi03G020910 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G020910
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionActin-depolymerizing factor
Locationchr03: 32188141 .. 32190323 (+)
RNA-Seq ExpressionLsi03G020910
SyntenyLsi03G020910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCACTCTACATTTTTTTCCTCATTTCTGAACCTGCCTTTCTTCTTCATCTTCATCGGAGCTTCTTCTTTCTCGTCTCAAAATGGTGAGTCCTCCGAAGCTTACTTAATTTCTGCTTTTATTCGTGATTTGACGATCGGTATGGTTCTTGAGAAAGTAGGATTGTATTTTTAGTTTGTCATTTTTAAAATCACTACACTCTCGCGATCGGGAGTTTCTTGCAATTTGTGGAGTTTGTGTACCTCTGGTACATGATTTTGAAGTAATAATCCGCATGCAGTTTCCAGGATGGGGAGTGAATGCATTATTGTTACATAAAGATCTGATTTGAATTCTACTGTGGTTTTCTTCAACTAAGCGAAACGTCATTTTCTTTAATTTACTATAGACTTCAGGTAATCCAGTGGCCTTGGATCTATTATGATCATCGTTTTGATTTTTGTACTTCTTATTTTGTTATGTTTGAAATTTCTGTCAATGATTGCAATTACAAGTTATATTCCTGTATTCTCCCTTTGAATTGCTATTAATCTTCTCTTTGCATGCTGTAAATGAAGTTGAGATTCCGTCGAGTTGTGAATTTGCTTTAAATTTGGTTGCAAATCAATATCAGCTATCAAGATATGAGGGGGGAAATCTTATCCTGCCCATTTACTTGTTACAAGATTATCTTACTTTGACTCGGTGTTTTCTAAAGCTACTAAAACGCAATAGCCCTTTGGAACTTAGAGGTTTCATCAGGCGCACAGTAGACAAATGTAAATGAAATTTTAATATAAGTAGAAAAACAGTAGGATGAATAAGAAGAAAATAGAGATTTCACTTGAGATTATAAGAATATCTATGCATTTCTTTCTTGAAAATTAGAAAAATTAATAAAAGAGAGTAGGAAATCAGACTCGAGAGCTGAGGCGCACACTATAAGTGCTAAGGCGCATGCCTCAAGCGGGCTTTATTTAGGGAGCCTTTGCTTGAAAGGCTTCTTTGAAGCAAGGCACAGAGGTCGGGCTTAAGCGCATCTAGGAGCTTGACTCAACAGAAAATTTGACTAAATATGACCCCAAATTTATGGCTAAGATAAGGGCTCTCAAGGGAGAAAGAGAACAATTATTGAAAACTTGCAAAATCTGATCAGATCAGAAAGATTCTTTTGTTCCCAATTTTCTGCATTTCCAGTGTTAGGTTAAACAATATTCACCCCACTGTTTTGCTTTTGCAGCCTTTGTGTTTTATAGCTGTATTATATTATAATCAAGAGCATTTTATTTTCCAATTTTGTTACTGCCGTTTCAATTCGTTATGTATGCATCTCTTTTGGACTTCGAAGTTTTTTTTTTTTAAAAGTAGTTTCATTCTGGACTTTATAGGCCAATGCAGCATCGGGAATGGCCGTGAATGATGATTGCAAGCTGAAGTTTTTGGAGCTGAAAGCGAAAAGAACCTATCGCTTTATTGTGTTTAAGATCGAGGAGAAGCAAAAGCAAGTTGTAGTAGAGAAAGTTGGTGAGCCAACACAAAGTTATGAGGACTTTGCTGCAAGCCTCCCTTCAGACGAATGCCGTTATGCTATCTATGATTTCGACTTCGTTACCGAAGAGAACTGTCAGAAGAGCAGAATCTTCTTTATTGCCTGGTATAGCTAACATCTCCTTTACTATCCCTTTCATGTTTGTCTTTCCAACTATCACACGCTAACAAAAAAAACGCCATTCTTTGAAGGTCCCCTGATAATTCAAGAGTCAGAAGCAAGATGATATATGCAAGCTCCAAAGATAGATTCAAGAGAGAGCTGGATGGCTTTCAAGTTGAACTTCAAGCAACTGATCCGACCGAGATGGGTCTTGATGTCATTCGAAGCCGAGTTGGCTGACCGATATCTTCTGATTCGAACGGCCAATTCGGGTAAAATAGTATCCAATTTCCCTACACATCTTCTTTTCAAGGTGAACGAGTGTCTTGGTCCTGGTTTTGTGGTATATAATGTGTTTTGGATTTATGTTCTAAATGGCTTTTTGTATGTGTTCGAGCAAATACGCCTCGTAGTTGTTTGACAACATATATATGTATGTATAATTTTTACTCTTTAGGGAGATATTGAAGCAGGATGGTTATCAGATTCCAGCTGCTGTTCTGCTTGTATTCCATATCAATGCAAGAGGAGTGAACATTTTTATTTGAGCAAA

mRNA sequence

AACCACTCTACATTTTTTTCCTCATTTCTGAACCTGCCTTTCTTCTTCATCTTCATCGGAGCTTCTTCTTTCTCGTCTCAAAATGTTTCCAGGATGGGGAGTGAATGCATTATTGTTACATAAAGATCTGATTTGAATTCTACTGTGGTTTTCTTCAACTAAGCGAAACGTCATTTTCTTTAATTTACTATAGACTTCAGGCCAATGCAGCATCGGGAATGGCCGTGAATGATGATTGCAAGCTGAAGTTTTTGGAGCTGAAAGCGAAAAGAACCTATCGCTTTATTGTGTTTAAGATCGAGGAGAAGCAAAAGCAAGTTGTAGTAGAGAAAGTTGGTGAGCCAACACAAAGTTATGAGGACTTTGCTGCAAGCCTCCCTTCAGACGAATGCCGTTATGCTATCTATGATTTCGACTTCGTTACCGAAGAGAACTGTCAGAAGAGCAGAATCTTCTTTATTGCCTGGTCCCCTGATAATTCAAGAGTCAGAAGCAAGATGATATATGCAAGCTCCAAAGATAGATTCAAGAGAGAGCTGGATGGCTTTCAAGTTGAACTTCAAGCAACTGATCCGACCGAGATGGGTCTTGATGTCATTCGAAGCCGAGTTGGCTGACCGATATCTTCTGATTCGAACGGCCAATTCGGGTAAAATAGTATCCAATTTCCCTACACATCTTCTTTTCAAGGTGAACGAGTGTCTTGGTCCTGGTTTTGTGGTATATAATGTGTTTTGGATTTATGTTCTAAATGGCTTTTTGTATGTGTTCGAGCAAATACGCCTCGTAGTTGTTTGACAACATATATATGTATGTATAATTTTTACTCTTTAGGGAGATATTGAAGCAGGATGGTTATCAGATTCCAGCTGCTGTTCTGCTTGTATTCCATATCAATGCAAGAGGAGTGAACATTTTTATTTGAGCAAA

Coding sequence (CDS)

ATGGCCGTGAATGATGATTGCAAGCTGAAGTTTTTGGAGCTGAAAGCGAAAAGAACCTATCGCTTTATTGTGTTTAAGATCGAGGAGAAGCAAAAGCAAGTTGTAGTAGAGAAAGTTGGTGAGCCAACACAAAGTTATGAGGACTTTGCTGCAAGCCTCCCTTCAGACGAATGCCGTTATGCTATCTATGATTTCGACTTCGTTACCGAAGAGAACTGTCAGAAGAGCAGAATCTTCTTTATTGCCTGGTCCCCTGATAATTCAAGAGTCAGAAGCAAGATGATATATGCAAGCTCCAAAGATAGATTCAAGAGAGAGCTGGATGGCTTTCAAGTTGAACTTCAAGCAACTGATCCGACCGAGATGGGTCTTGATGTCATTCGAAGCCGAGTTGGCTGA

Protein sequence

MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRYAIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPTEMGLDVIRSRVG
Homology
[Close]
BLAST of Lsi03G020910 vs. ExPASy Swiss-Prot
Match: Q9FVI1 (Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 7.7e-62
Identity = 114/132 (86.36%), Postives = 125/132 (94.70%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKLKFLELKAKRTYRFI++KIEEKQK+VVVEK+GEPT+SYEDF A LP+DECRY
Sbjct: 8   MAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           A+YDFDF+T+EN QKSRIFFIAWSPD +RVRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  AVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSRVG 133
           EMGLDV RSR G
Sbjct: 128 EMGLDVFRSRAG 139

[Close]
BLAST of Lsi03G020910 vs. ExPASy Swiss-Prot
Match: Q9FVI2 (Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-61
Identity = 114/130 (87.69%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQVVVEK+GEPT+SYEDFAASLP +ECRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           A+YDFDFVT ENCQKSRIFFIAW PD +RVRSKMIYASSKDRFKRELDG QVELQA DPT
Sbjct: 68  AVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPT 127

Query: 121 EMGLDVIRSR 131
           EMGLDVI+SR
Sbjct: 128 EMGLDVIQSR 137

[Close]
BLAST of Lsi03G020910 vs. ExPASy Swiss-Prot
Match: Q9ZSK3 (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 7.2e-60
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEKVGEP  +YEDFAASLP+DECRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSRV 132
           EM LDV++SRV
Sbjct: 128 EMDLDVLKSRV 138

[Close]
BLAST of Lsi03G020910 vs. ExPASy Swiss-Prot
Match: Q0DLA3 (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 PE=3 SV=2)

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-59
Identity = 110/130 (84.62%), Postives = 124/130 (95.38%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+D+CKLKFLELKAKRTYRFI++KI+EK+K VVVEKVGEP  +Y+DFAASLP++ECRY
Sbjct: 8   MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AI+D+DFVTEENCQKS+IFFIAWSPD SRVRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  AIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSR 131
           E+GLDVIR R
Sbjct: 128 EVGLDVIRGR 137

[Close]
BLAST of Lsi03G020910 vs. ExPASy Swiss-Prot
Match: Q39250 (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.7e-59
Identity = 111/130 (85.38%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQVVVEKVG+P Q+YE+FAA LP+DECRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSR 131
           EM LDV RSR
Sbjct: 128 EMDLDVFRSR 137

[Close]
BLAST of Lsi03G020910 vs. ExPASy TrEMBL
Match: A0A6J1F4F4 (actin-depolymerizing factor 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442017 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 8.3e-67
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           +AVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLP+DECRY
Sbjct: 8   IAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 68  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 127

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSRVG
Sbjct: 128 EMGLDVIRSRVG 139

[Close]
BLAST of Lsi03G020910 vs. ExPASy TrEMBL
Match: A0A6J1L3B8 (actin-depolymerizing factor 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498729 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAVNDDCKLKFL LKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY
Sbjct: 8   MAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           A+YDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 68  AVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 127

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSR G
Sbjct: 128 EMGLDVIRSRAG 139

[Close]
BLAST of Lsi03G020910 vs. ExPASy TrEMBL
Match: A0A6J1KUA9 (actin-depolymerizing factor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498729 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAVNDDCKLKFL LKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY
Sbjct: 25  MAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 84

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           A+YDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 85  AVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 144

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSR G
Sbjct: 145 EMGLDVIRSRAG 156

[Close]
BLAST of Lsi03G020910 vs. ExPASy TrEMBL
Match: A0A6J1G2I6 (actin-depolymerizing factor 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450067 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAVNDDCKLKFL LKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY
Sbjct: 36  MAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 95

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           A+YDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 96  AVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 155

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSR G
Sbjct: 156 EMGLDVIRSRAG 167

[Close]
BLAST of Lsi03G020910 vs. ExPASy TrEMBL
Match: A0A6J1J833 (actin-depolymerizing factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482130 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 129/132 (97.73%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           +AVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLP+DECRY
Sbjct: 8   IAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT+ENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 68  AIYDFDFVTKENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 127

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSRVG
Sbjct: 128 EMGLDVIRSRVG 139

[Close]
BLAST of Lsi03G020910 vs. NCBI nr
Match: XP_038905295.1 (actin-depolymerizing factor 2-like [Benincasa hispida] >XP_038905296.1 actin-depolymerizing factor 2-like [Benincasa hispida] >XP_038905297.1 actin-depolymerizing factor 2-like [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 2.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY
Sbjct: 8   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 68  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 127

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSRVG
Sbjct: 128 EMGLDVIRSRVG 139

[Close]
BLAST of Lsi03G020910 vs. NCBI nr
Match: KAG7017313.1 (Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           +AVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLP+DECRY
Sbjct: 72  IAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPADECRY 131

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 132 AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 191

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSRVG
Sbjct: 192 EMGLDVIRSRVG 203

[Close]
BLAST of Lsi03G020910 vs. NCBI nr
Match: XP_023528601.1 (actin-depolymerizing factor 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           +AVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLP+DECRY
Sbjct: 53  IAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPADECRY 112

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 113 AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 172

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSRVG
Sbjct: 173 EMGLDVIRSRVG 184

[Close]
BLAST of Lsi03G020910 vs. NCBI nr
Match: XP_022935027.1 (actin-depolymerizing factor 2-like [Cucurbita moschata] >XP_023528602.1 actin-depolymerizing factor 2-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG6580558.1 Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 130/132 (98.48%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           +AVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLP+DECRY
Sbjct: 8   IAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 68  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 127

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSRVG
Sbjct: 128 EMGLDVIRSRVG 139

[Close]
BLAST of Lsi03G020910 vs. NCBI nr
Match: XP_022971269.1 (actin-depolymerizing factor 1-like isoform X1 [Cucurbita maxima] >XP_022971270.1 actin-depolymerizing factor 1-like isoform X1 [Cucurbita maxima] >XP_023005851.1 actin-depolymerizing factor 1-like isoform X1 [Cucurbita maxima] >XP_023005852.1 actin-depolymerizing factor 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 5.0e-66
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAVNDDCKLKFL LKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY
Sbjct: 25  MAVNDDCKLKFLALKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 84

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           A+YDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT
Sbjct: 85  AVYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 144

Query: 121 EMGLDVIRSRVG 133
           EMGLDVIRSR G
Sbjct: 145 EMGLDVIRSRAG 156

[Close]
BLAST of Lsi03G020910 vs. TAIR 10
Match: AT5G59890.1 (actin depolymerizing factor 4 )

HSP 1 Score: 231.1 bits (588), Expect = 5.1e-61
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEKVGEP  +YEDFAASLP+DECRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSRV 132
           EM LDV++SRV
Sbjct: 128 EMDLDVLKSRV 138

[Close]
BLAST of Lsi03G020910 vs. TAIR 10
Match: AT5G59890.2 (actin depolymerizing factor 4 )

HSP 1 Score: 231.1 bits (588), Expect = 5.1e-61
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEKVGEP  +YEDFAASLP+DECRY
Sbjct: 1   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRY 60

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 61  AIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 120

Query: 121 EMGLDVIRSRV 132
           EM LDV++SRV
Sbjct: 121 EMDLDVLKSRV 131

[Close]
BLAST of Lsi03G020910 vs. TAIR 10
Match: AT3G46010.1 (actin depolymerizing factor 1 )

HSP 1 Score: 228.4 bits (581), Expect = 3.3e-60
Identity = 111/130 (85.38%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQVVVEKVG+P Q+YE+FAA LP+DECRY
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSR 131
           EM LDV RSR
Sbjct: 128 EMDLDVFRSR 137

[Close]
BLAST of Lsi03G020910 vs. TAIR 10
Match: AT3G46010.2 (actin depolymerizing factor 1 )

HSP 1 Score: 228.4 bits (581), Expect = 3.3e-60
Identity = 111/130 (85.38%), Postives = 122/130 (93.85%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKL+FLELKAKRT+RFIV+KIEEKQKQVVVEKVG+P Q+YE+FAA LP+DECRY
Sbjct: 19  MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 78

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
           AIYDFDFVT ENCQKS+IFFIAW PD ++VRSKMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 79  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 138

Query: 121 EMGLDVIRSR 131
           EM LDV RSR
Sbjct: 139 EMDLDVFRSR 148

[Close]
BLAST of Lsi03G020910 vs. TAIR 10
Match: AT3G46000.1 (actin depolymerizing factor 2 )

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-57
Identity = 106/130 (81.54%), Postives = 120/130 (92.31%), Query Frame = 0 

Query: 1   MAVNDDCKLKFLELKAKRTYRFIVFKIEEKQKQVVVEKVGEPTQSYEDFAASLPSDECRY 60
           MAV+DDCKLKF+ELKAKRT+R IV+KIE+  KQV+VEK+GEP QSY+DFAASLP+D+CRY
Sbjct: 8   MAVHDDCKLKFMELKAKRTFRTIVYKIED--KQVIVEKLGEPEQSYDDFAASLPADDCRY 67

Query: 61  AIYDFDFVTEENCQKSRIFFIAWSPDNSRVRSKMIYASSKDRFKRELDGFQVELQATDPT 120
            IYDFDFVT ENCQKS+IFFIAWSPD ++VR KMIYASSKDRFKRELDG QVELQATDPT
Sbjct: 68  CIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMGLDVIRSR 131
           EMGLDV +SR
Sbjct: 128 EMGLDVFKSR 135

The following BLAST results are available for this feature:
BLAST of Lsi03G020910 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FVI17.7e-6286.36Actin-depolymerizing factor 2 OS=Petunia hybrida OX=4102 GN=ADF2 PE=2 SV=1[more]
Q9FVI22.3e-6187.69Actin-depolymerizing factor 1 OS=Petunia hybrida OX=4102 GN=ADF1 PE=2 SV=1[more]
Q9ZSK37.2e-6085.50Actin-depolymerizing factor 4 OS=Arabidopsis thaliana OX=3702 GN=ADF4 PE=1 SV=2[more]
Q0DLA31.2e-5984.62Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 P... [more]
Q392504.7e-5985.38Actin-depolymerizing factor 1 OS=Arabidopsis thaliana OX=3702 GN=ADF1 PE=1 SV=1[more]
BLAST of Lsi03G020910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F4F48.3e-6798.48actin-depolymerizing factor 2-like OS=Cucurbita moschata OX=3662 GN=LOC111442017... [more]
A0A6J1L3B82.4e-6697.73actin-depolymerizing factor 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1KUA92.4e-6697.73actin-depolymerizing factor 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1G2I62.4e-6697.73actin-depolymerizing factor 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1J8332.4e-6697.73actin-depolymerizing factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482130 P... [more]
BLAST of Lsi03G020910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038905295.12.6e-67100.00actin-depolymerizing factor 2-like [Benincasa hispida] >XP_038905296.1 actin-dep... [more]
KAG7017313.11.7e-6698.48Actin-depolymerizing factor 2, partial [Cucurbita argyrosperma subsp. argyrosper... [more]
XP_023528601.11.7e-6698.48actin-depolymerizing factor 1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022935027.11.7e-6698.48actin-depolymerizing factor 2-like [Cucurbita moschata] >XP_023528602.1 actin-de... [more]
XP_022971269.15.0e-6697.73actin-depolymerizing factor 1-like isoform X1 [Cucurbita maxima] >XP_022971270.1... [more]
BLAST of Lsi03G020910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G59890.15.1e-6185.50actin depolymerizing factor 4 [more]
AT5G59890.25.1e-6185.50actin depolymerizing factor 4 [more]
AT3G46010.13.3e-6085.38actin depolymerizing factor 1 [more]
AT3G46010.23.3e-6085.38actin depolymerizing factor 1 [more]
AT3G46000.11.2e-5781.54actin depolymerizing factor 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002108Actin-depolymerising factor homology domainSMARTSM00102adf_2coord: 5..132
e-value: 9.9E-60
score: 214.4
IPR002108Actin-depolymerising factor homology domainPFAMPF00241Cofilin_ADFcoord: 7..129
e-value: 1.7E-37
score: 127.9
IPR002108Actin-depolymerising factor homology domainPROSITEPS51263ADF_Hcoord: 1..132
score: 40.352173
IPR029006ADF-H/Gelsolin-like domain superfamilyGENE3D3.40.20.10Severincoord: 1..132
e-value: 2.7E-50
score: 172.3
NoneNo IPR availablePANTHERPTHR11913:SF74ACTIN-DEPOLYMERIZING FACTOR 2-LIKEcoord: 1..130
NoneNo IPR availableSUPERFAMILY55753Actin depolymerizing proteinscoord: 1..131
IPR017904ADF/CofilinPANTHERPTHR11913COFILIN-RELATEDcoord: 1..130
IPR017904ADF/CofilinCDDcd11286ADF_cofilin_likecoord: 1..131
e-value: 3.37203E-63
score: 187.379

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G020910.1Lsi03G020910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030042 actin filament depolymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051015 actin filament binding
molecular_function GO:0003779 actin binding