Lsi03G020500 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G020500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 31825815 .. 31827937 (-)
RNA-Seq ExpressionLsi03G020500
SyntenyLsi03G020500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAAGAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGTTATTTTGTGTGAAATTAAGAATCAGATGTTAAAAATCAATAGGAAGAGTTTTTCTCATATCCCTAGATTACGTAACAATGTTGCTCATGAATTATTTAAGTGGGCATGGGATAACGAGGGAAGTGGGGAGTGGTATGTTAGCCCTCCCAAATAGCTTTGTCCTTTATTATATTTAGATGACTCTTGTTGTAATTCTATTTTAAATCAGTTGTTTGAATGAAATACAAATGCTTAGCTTAAAAAAATAAGTGAACTTAATTAATTTATTTACATCAATTTTGAACACCATGTTTTTCTTTTTTATGAACTAAAAAAAAGGGAAAAAGGGAAAAAGGAAAAAGAAGCCTAATTGTTGTACACGATTTATTTGGTTTGAAAATTAATCAAAATAATGTTAATATATCTTGAAAAATCAGTATCAATGTATAATTACGGACGAATTAAAATAAGCTAAAAGAACAACACGATTCAATTAAATTAAGTAGCCGTTAGTGAATATGGTGGACCGGTCAAAGTCAAAGTCAAAGGTGAGCCGTTACCATTCACCATCCGTCTACCGCAAATTTCGGATGGACGATTGCTATGTATTTCTCTCTCAGTCTCAGTCTCAGTCTCTCACTTACACTTTCTTCTTCAACACGTTCTCTCAGACTAACTACAATCAAAGTTCTCCATCAACACCCTCTTCCTTTTCATTGCCGAAACCAAACCCTCTTTCAGCCTTTTTCTAGGGTTAGTGCTTTACAGAAGATTAGAGCTTTGTAATCAAAAGGATTGGCGAACTCTGTTTGTTGGAGTAGGAATTATGTCTGCATTTGACTACAAGTTCTGGGATGTGGAAGTTTGATTTGGACGGGACAAAGACAAACAGAGCAGTTGCCGTTGATGGATTGTTTGCTTGGGCAAAAGAAAAGCAATTGGCCGCTGGGATTTTCGCATATGATTCCAAGCCCAACGGTGCACGCCAAACCGGTAAAATACAATTTCAGTTACACTCCAAGAAATCAATCAATCTGTAGGCGCCAATCGTGCTTTCAAATTTCTTTTTCCAGATTATAAAATTTGGCTATCAAAACAAACCTTTTAAATCTATTTGAAATACAGAGAAAAATGCTAATAATTGACAAATATTTTTTTTTCCTGTTTGAATGCAGGAACCGCAGCAGGGTATGGAGTACGGGGTCGAATGAATTTGCGGCTCAAGAGATTTGGCATGTTTGACATAAATTCGAAGTCATCCTTTAAATCGAGTTCAATTTATTCTGTTAGATCATTACTTCCACCATTCTGTGTTTGTTAATTTGTTTGGGGATATTTTTGAAGTTCTGTTCGATTGACGCCTCTCATTGTTGTTCGGGATGATTGGTCCACATTGTAGAATGCATTGGTCCTAGAATACGAAGAATTCTTCTGTTATTATCATTATTTGTTTTTTTGTTGACAATAACTTGTCTGTTACTATTAGATTTCAAACAACCTAGAAACATCGCTCTAGATATATTATCAAAGTTCCTTACAACAGTCGTATGATTAAAACAATTATAATAGAGAGAGTCAATGTTTTGTTTGTTTTGTTTGTTTTGTTTTTTTTTTTTTTTTCGTTTTTTTTTCGGGTTTTTTATATTGAATCATTTTGCTTTTCAGAAACTGGAGATTTTGAGAATGGGCTTCTTGGTTCTAAACTTGCTTTTGCTAACATTCCTCTAGGTCAAAACCATGAACTATATATGAGAGATATATTAGTTCTTGGATCAACTTCTGAAACTGATTTGAGCCCAAGGCAAAATGATAGCACCAATTTGTTGAAACTGAAGGTACTTTTTAACAATTTCTTTGTTTGACTGAACGACTCTTTTGACTCTAATGTATTGAAGATCAACGCATAAATATATATTTTTCAGGTAACAATGGTGTTCTACCTTTGTGTAGTATGAGTCCACATGCAGGCGGTTTGGTTTGTGTGAAGTTTCTGGCGAGTAG

mRNA sequence

ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAAGAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGAATTATGTCTGCATTTGACTACAAGTTCTGGGATGTGGAAGTTTGATTTGGACGGGACAAAGACAAACAGAGCAGTTGCCGTTGATGGATTGTTTGCTTGGGCAAAAGAAAAGCAATTGGCCGCTGGGATTTTCGCATATGATTCCAAGCCCAACGGTGCACGCCAAACCGAAACTGGAGATTTTGAGAATGGGCTTCTTGGTTCTAAACTTGCTTTTGCTAACATTCCTCTAGGTCAAAACCATGAACTATATATGAGAGATATATTAGTTCTTGGATCAACTTCTGAAACTGATTTGAGCCCAAGGCAAAATGATAGCACCAATTTGTTGAAACTGAAGTATGAGTCCACATGCAGGCGGTTTGGTTTGTGTGAAGTTTCTGGCGAGTAG

Coding sequence (CDS)

ATGGAGGGGGAGACTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGAATGTGCATCTCTATTGTTCATGTGGAGATCGATTACGAGGCTTTGGTCAATATTATTAAGAAGGATTCTGGGAGGTTCTCTTCTTTGAAGGAATTATGTCTGCATTTGACTACAAGTTCTGGGATGTGGAAGTTTGATTTGGACGGGACAAAGACAAACAGAGCAGTTGCCGTTGATGGATTGTTTGCTTGGGCAAAAGAAAAGCAATTGGCCGCTGGGATTTTCGCATATGATTCCAAGCCCAACGGTGCACGCCAAACCGAAACTGGAGATTTTGAGAATGGGCTTCTTGGTTCTAAACTTGCTTTTGCTAACATTCCTCTAGGTCAAAACCATGAACTATATATGAGAGATATATTAGTTCTTGGATCAACTTCTGAAACTGATTTGAGCCCAAGGCAAAATGATAGCACCAATTTGTTGAAACTGAAGTATGAGTCCACATGCAGGCGGTTTGGTTTGTGTGAAGTTTCTGGCGAGTAG

Protein sequence

MEGETLALLFGLKLVQRMCISIVHVEIDYEALVNIIKKDSGRFSSLKELCLHLTTSSGMWKFDLDGTKTNRAVAVDGLFAWAKEKQLAAGIFAYDSKPNGARQTETGDFENGLLGSKLAFANIPLGQNHELYMRDILVLGSTSETDLSPRQNDSTNLLKLKYESTCRRFGLCEVSGE
Homology
The following BLAST results are available for this feature:
BLAST of Lsi03G020500 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G020500 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G020500 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G020500 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..52
e-value: 4.7E-6
score: 26.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G020500.1Lsi03G020500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity