Lsi03G019850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G019850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSplicing factor 3A subunit 2
Locationchr03: 31235338 .. 31238422 (-)
RNA-Seq ExpressionLsi03G019850
SyntenyLsi03G019850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCGATTCGCTTAGATAAACAGAGAAAGGGGTTTTTAGGTCGCCGGAAGGACGAAGAAGCTTTGTCAGTCGGAAATCGGGATCCGGTCAAGAAGCAACGCCGAAGTTTGACGGCGATGGATAGAGAGTGGGGTTCGAAGCCGGGAAGTGGAGGTGCGGCCTCTGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGCAATCATCTTGGAAGGTCCTTCTTTTCTCTTGCTCGTTCTAGTTCTATCCGTTTTTTTGGAAATTCTTGAGTTGAATTGTAATGGTTTTTTGTTGTAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGGCAAGCTTTTATGCCCTTCTCTTTTATGTATTTATTTTTTAATTTTGCCACACTAATTGTGTGTGAGGTTGAACAATAATTTTATTGTTGTTTCTTTGTAATCTTTCTGAAGGGTCACTCCCAAGCTAATTTCATTTGCTCTCGGTAGTGAGGATTGATATGAAATGATTTTGGTATATTTCAACCCTTTGCAATTGGATTGATGATAATACTCTTCATTTGACCATCATTGCAATTTAAAATCATAATGACGTAATGACCCCGTTTGTTCATTTTTAACTTAAGTTTGATAGCTTGCTAGAACACTAGGAACAGTGAGGTTAAGATTCCTGCTTTTAAGGCAAGTAACATTAACATGTATCCAATTGACTCCATGTCGAGTATGAATTTGCAGTTCAAAATGGCCAGTGTTCCAGGGTAGCTTTGAAATTTGAAGTGTTGGTTATAATGTGCAGGATGTGTTCCTTATTGTTTGTTTTTGTACTAAAAAATTGAGTTTGTGCTAATTAGCTCCTTTTCTGGCATGCTTGCAGTTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGGTATGGCTTTGTAGTTCATACAACAGGCTTCTGTATTATCTGTTGAAGATGATATTTCTTGAATTATTACTCAATTGTGTTGTGTCTGATTTTCCTGCTCCCTCTTCTTTACTCAAATATTGTTATTCAATGCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAGCAGGTTAACTAAGCACCACAATTCACATGCTTATGAAAACATGATATTGCCCTTTATCATTTCTACCTTCAATTAGAGCTAATTTTTTCATTCTCTATTGATACTATGTTCAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATCGCATTCAAGGTATTCTAGTCATGTATTCGTAAAATATGTTGATAAAAGGTTTAGCTTTTAGTTCCTACTTAAAGATCTTTACTTGCATGCATTTTAGGTTCCAAGCACAGAGATTGACAAATCGACCCCAAAATTCTTCTCACACTGGGATCCGGACTCTAAAATGTTCACGGTTTAGCTCTTTTCCTTCTTTCTATTTTTTAGAATCCTTTTTTTTTTATTCATTTGACACTCTTAGCCCATTACTACTTACATTTCAGCTGTATCTGAGGAAGTTAGGATTTGCAGCTGATCTTTAACTTTTGTAGTCCTTTTTGAATCTATTTAGTTATGGAACAAATCTGTAGTTTGGCTTGCCTGTGACCGTAAGTATTGTATACAAAATATTGATTGAATAGATTGCATTGCATGATGATTCCCTTTGATTCTTGCTACTTGTTTGAATTATTTTGGCTTTTGGGCCCCAAGTATCTGTACTTTGTTTATGACTAATTGATTTATGGCATGTTTGGGAGTAACTTTGAAATGGTCAAAATCACTAAAAAACATACTCTTAATCATTCAAAATCATTTTGATGGTATGAAAATTATGATTTAAAGTGTTAAATAAAAATTAATTTGATTTTGAATAATTAAAGACATGTTTGAGAGTAATTTTGAACATGACAAAAGTGATTCTAACAATTTCAAAATCACTTCTGTACGTGTCTTTAGTTGCAACTCTTCATATGGTAGTTTTTTTTGTCTTACATATTTAAAAATTTGGTGGCTCTCTTAGTCTTATCATATGGTTAATGATTTAACACGTTTAATATTGGAACCAACAACCTAAATGGCTTTCAACTTTCAAGATGATCATAGGTTAATCATGTTACAGTTTACTGTTGTACCATTTGGTTTTTGGTGATCGACTCCTCTGACGGTTATACTGAATATGAAATTTTGCAGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAATGGAACAGTGCCATCTGGTGCACCACCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCGCCCCAGCAAGGAGCACCACCTAGAGTTCCTCCTCCTCCGATGCCTGGGTCCTTGCCGCCTCCCCCTTCTGTTATGGCCAACGGTCCTCCTAGGCCAATGCCTCCTGGCGGGGCTCCGCCCATCCCTCCGCCACCTCCAATTGGTAATAACACAATGGTGAATTTCACTCCTGGTACTCAGATGAATAGACCTCCCATGCCGCCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCACCACCACCACCACCCAATATGGGATAGGCCACTTTAGCATCAGTTAAAGGCAAGGTTTGAGTGTAAAATTTGATACTGAACGTGCAGTGGACTTTAATTGTTAGCCTCATTAGTGAATTTTGATGCACTCTTCCGTTGTATGATCATATTTCGGCATGTAGAATCTTAACATACCCTTTGATTGTTGTTTCTTTTCAGGCAAAATGAAAGAATTTTGTTAATTGTGCTATATGTTTTCTTGT

mRNA sequence

CGGCGATTCGCTTAGATAAACAGAGAAAGGGGTTTTTAGGTCGCCGGAAGGACGAAGAAGCTTTGTCAGTCGGAAATCGGGATCCGGTCAAGAAGCAACGCCGAAGTTTGACGGCGATGGATAGAGAGTGGGGTTCGAAGCCGGGAAGTGGAGGTGCGGCCTCTGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGAACACTAGGAACAGTGAGGTTAAGATTCCTGCTTTTAAGGCAAGTAACATTAACATGTATCCAATTGACTCCATGTCGATTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAGCAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATCGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCGACCCCAAAATTCTTCTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAATGGAACAGTGCCATCTGGTGCACCACCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCGCCCCAGCAAGGAGCACCACCTAGAGTTCCTCCTCCTCCGATGCCTGGGTCCTTGCCGCCTCCCCCTTCTGTTATGGCCAACGGTCCTCCTAGGCCAATGCCTCCTGGCGGGGCTCCGCCCATCCCTCCGCCACCTCCAATTGGTAATAACACAATGGTGAATTTCACTCCTGGTACTCAGATGAATAGACCTCCCATGCCGCCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCACCACCACCACCACCCAATATGGGATAGGCCACTTTAGCATCAGTTAAAGGCAAGGTTTGAGTGTAAAATTTGATACTGAACGTGCAGTGGACTTTAATTGTTAGCCTCATTAGTGAATTTTGATGCACTCTTCCGTTGTATGATCATATTTCGGCATGTAGAATCTTAACATACCCTTTGATTGTTGTTTCTTTTCAGGCAAAATGAAAGAATTTTGTTAATTGTGCTATATGTTTTCTTGT

Coding sequence (CDS)

ATGGATAGAGAGTGGGGTTCGAAGCCGGGAAGTGGAGGTGCGGCCTCTGCACAAAATGAAGCTATCGATCGCAGAGAGCGTCTTCGACGGCTGGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTATTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGTAATTACTTGGCGCACACGCAGGGGAAGCGGCATCAGACTAATTTGGCTAAGAGAGCTGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGAACACTAGGAACAGTGAGGTTAAGATTCCTGCTTTTAAGGCAAGTAACATTAACATGTATCCAATTGACTCCATGTCGATTAAAATTGGAAGGCCTGGTTATCGAGTTACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTCCTTTTTCAGATTGAATATCCTGAAATTGAAGACCTAGCAAAGCCTAGGCATCGTTTTATGTCCTCTTATGAGCAGCGTGTGCAACCTTTTGACAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATCGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCGACCCCAAAATTCTTCTCACACTGGGATCCGGACTCTAAAATGTTCACGTTGCAATTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCACCTGTGCCTGCAGCCAATGGAACAGTGCCATCTGGTGCACCACCAAGGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCACCACCTCCGCCCCAGCAAGGAGCACCACCTAGAGTTCCTCCTCCTCCGATGCCTGGGTCCTTGCCGCCTCCCCCTTCTGTTATGGCCAACGGTCCTCCTAGGCCAATGCCTCCTGGCGGGGCTCCGCCCATCCCTCCGCCACCTCCAATTGGTAATAACACAATGGTGAATTTCACTCCTGGTACTCAGATGAATAGACCTCCCATGCCGCCTCCCCCACAGGGCTTCCCAGGTCAGGGTATCCGGCAGCCGCCACCACCACCACCACCCAATATGGGATAG

Protein sequence

MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPNMG
Homology
[Close]
BLAST of Lsi03G019850 vs. ExPASy Swiss-Prot
Match: Q15428 (Splicing factor 3A subunit 2 OS=Homo sapiens OX=9606 GN=SF3A2 PE=1 SV=2)

HSP 1 Score: 278.5 bits (711), Expect = 1.1e-73
Identity = 204/384 (53.12%), Postives = 237/384 (61.72%), Query Frame = 0 

Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPIDS 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K K      V++  F            
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVK------VEVKKF------------ 127

Query: 126 MSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQ 185
             +KIGRPGY+VTKQ DSE  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+Q
Sbjct: 128 --VKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQ 187

Query: 186 YLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEAN------- 245
           YLL AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK +   A        
Sbjct: 188 YLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGP 247

Query: 246 ---KPPPVPAANGTVPSGAPPRPLPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGS 305
              K PP P  NG  P    P  LPPPP      PP PP  P    PP  P  PPP PG 
Sbjct: 248 PGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGV 307

Query: 306 LPPPPSV--MANG--PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMP---PPP 363
            PP P V   A+G  PP P     AP + PP P  +       P      PP P   PP 
Sbjct: 308 HPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPA 367

[Close]
BLAST of Lsi03G019850 vs. ExPASy Swiss-Prot
Match: A5PJN8 (Splicing factor 3A subunit 2 OS=Bos taurus OX=9913 GN=SF3A2 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 7.0e-73
Identity = 203/384 (52.86%), Postives = 238/384 (61.98%), Query Frame = 0 

Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPIDS 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K K      V++  F            
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVK------VEVKKF------------ 127

Query: 126 MSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQ 185
             +KIGRPGY+VTKQ D+E  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+Q
Sbjct: 128 --VKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQ 187

Query: 186 YLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEAN------- 245
           YLL AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK +   A        
Sbjct: 188 YLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGP 247

Query: 246 ---KPPPVPAANGTVPSGAPPRPLPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGS 305
              K PP P  NG  P    P  LPPPP      PP PP  P    PP  P  PPP PG 
Sbjct: 248 PGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPSGPAPSGPPGPPQLPPPAPGV 307

Query: 306 LPPPPSV--MANG--PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMP---PPP 363
            PP P V   A+G  PP P     AP + PP P+ +       P      PP P   PP 
Sbjct: 308 HPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPVVH-------PPASGVHPPAPGVHPPA 364

[Close]
BLAST of Lsi03G019850 vs. ExPASy Swiss-Prot
Match: Q6AXT8 (Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 9.2e-73
Identity = 199/370 (53.78%), Postives = 238/370 (64.32%), Query Frame = 0 

Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPIDS 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K K      V++  F            
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVK------VEVKKF------------ 127

Query: 126 MSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQ 185
             +KIGRPGY+VTKQ D+E  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+Q
Sbjct: 128 --VKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQ 187

Query: 186 YLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPPVPA 245
           YLL AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK +     KPP  P 
Sbjct: 188 YLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKME-----KPPAPP- 247

Query: 246 ANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMANGP 305
              ++P+G P    PPPP     PP PP    P  +PPPP PG LP    PP     +GP
Sbjct: 248 ---SLPAGPPGVKRPPPPLMNGLPPRPP---LPDALPPPP-PGGLPLPPMPPTGPAPSGP 307

Query: 306 PRP--MPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMP---PPPQGF--PGQGIRQPP 362
           P P  MPP  AP + PP P+ +       P      PP P   PP  G   P  G+  P 
Sbjct: 308 PGPPQMPP-PAPGVHPPAPVVHPPTSGVHPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPA 343

[Close]
BLAST of Lsi03G019850 vs. ExPASy Swiss-Prot
Match: Q62203 (Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 2.2e-66
Identity = 195/380 (51.32%), Postives = 225/380 (59.21%), Query Frame = 0 

Query: 6   GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
           G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8   GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67

Query: 66  NYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPIDS 125
           +YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P + K      V++  F            
Sbjct: 68  SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVK------VEVKKF------------ 127

Query: 126 MSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQ 185
             +KIGRPGY+VTKQ D+E  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+Q
Sbjct: 128 --VKIGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQ 187

Query: 186 YLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEAN------- 245
           YLL AAEPYE IAFKVPS EIDK+  KF          F LQ +FK +   A        
Sbjct: 188 YLLMAAEPYETIAFKVPSREIDKAEGKF----------FFLQFHFKMEKPPAPPSLPAGP 247

Query: 246 ---KPPPVPAANGTVPSGAPPRPLPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGS 305
              K PP P  NG  P    P  LPPPP      PP PP  P    PP  P  PPP PG 
Sbjct: 248 PGVKRPPPPLMNGLPPRPPLPDALPPPPPGGLPLPPMPPTGPAPSGPPGPPQMPPPAPGV 307

Query: 306 LPPPPSVMANGPPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMP---PPPQGF- 362
            PP P V    PP       AP + PP P+ +       P      PP P   PP  G  
Sbjct: 308 HPPAPVV---HPPTSGVHPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPTPGVHPPAPGVH 354

[Close]
BLAST of Lsi03G019850 vs. ExPASy Swiss-Prot
Match: Q54B65 (Splicing factor 3A subunit 2 OS=Dictyostelium discoideum OX=44689 GN=sf3a2 PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.6e-64
Identity = 132/231 (57.14%), Postives = 170/231 (73.59%), Query Frame = 0 

Query: 4   EWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNN 63
           E+G K GSGG  S+Q + IDRRER ++L LE +D++KDPY + NH+GS+EC+LCLT+HNN
Sbjct: 3   EYG-KAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNN 62

Query: 64  EGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINMYPI 123
            GNYLAHTQGK+HQT+LA+RAA+E +E P+  + +  + TR                  I
Sbjct: 63  VGNYLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTR-----------------VI 122

Query: 124 DSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKR 183
              +IKIGRPGY++ KQ DS+T Q SLLFQI+YPEIE   +PRHR MS++EQRV+  +K 
Sbjct: 123 HKKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKD 182

Query: 184 YQYLLFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 232
           YQYLLFAAEPYE IAFK+P+ EID++T    KFF+HWD  +K FTLQLYFK
Sbjct: 183 YQYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWD-RNKTFTLQLYFK 214

[Close]
BLAST of Lsi03G019850 vs. ExPASy TrEMBL
Match: A0A5A7TQW8 (Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003160 PE=3 SV=1)

HSP 1 Score: 620.2 bits (1598), Expect = 5.6e-174
Identity = 333/362 (91.99%), Postives = 334/362 (92.27%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK                  M
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK-----------VSVRKTGM 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
               S   KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 LLCPSPLFKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNRPPMPPPPQ FPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQ-PPPPPPN 350

Query: 361 MG 363
           MG
Sbjct: 361 MG 350

[Close]
BLAST of Lsi03G019850 vs. ExPASy TrEMBL
Match: A0A0A0LEB1 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440 PE=3 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 1.3e-173
Identity = 332/362 (91.71%), Postives = 336/362 (92.82%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAA+AQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPPIGNNTM NFTPGTQMNRPPMPPPPQGFPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPIGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQ-PPPPPPN 341

Query: 361 MG 363
           MG
Sbjct: 361 MG 341

[Close]
BLAST of Lsi03G019850 vs. ExPASy TrEMBL
Match: A0A5D3DPC7 (Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002950 PE=3 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 3.6e-173
Identity = 331/362 (91.44%), Postives = 335/362 (92.54%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNRPPMPPPPQ FPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQ-PPPPPPN 341

Query: 361 MG 363
           MG
Sbjct: 361 MG 341

[Close]
BLAST of Lsi03G019850 vs. ExPASy TrEMBL
Match: A0A1S3B729 (splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 3.6e-173
Identity = 331/362 (91.44%), Postives = 335/362 (92.54%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNRPPMPPPPQ FPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQ-PPPPPPN 341

Query: 361 MG 363
           MG
Sbjct: 361 MG 341

[Close]
BLAST of Lsi03G019850 vs. ExPASy TrEMBL
Match: A0A6J1KWM2 (splicing factor 3A subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111498269 PE=3 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 1.1e-164
Identity = 320/362 (88.40%), Postives = 325/362 (89.78%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
             VPAANGTV       PLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPP VMANG
Sbjct: 241 QTVPAANGTV-------PLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNR PMPPPPQGFPGQG+RQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQ-PPPPPPN 334

Query: 361 MG 363
           MG
Sbjct: 361 MG 334

[Close]
BLAST of Lsi03G019850 vs. NCBI nr
Match: KAA0043971.1 (splicing factor 3A subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 620.2 bits (1598), Expect = 1.2e-173
Identity = 333/362 (91.99%), Postives = 334/362 (92.27%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK                  M
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK-----------VSVRKTGM 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
               S   KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 LLCPSPLFKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNRPPMPPPPQ FPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQ-PPPPPPN 350

Query: 361 MG 363
           MG
Sbjct: 361 MG 350

[Close]
BLAST of Lsi03G019850 vs. NCBI nr
Match: XP_004137848.1 (splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein Csa_002498 [Cucumis sativus])

HSP 1 Score: 619.0 bits (1595), Expect = 2.6e-173
Identity = 332/362 (91.71%), Postives = 336/362 (92.82%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAA+AQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPPIGNNTM NFTPGTQMNRPPMPPPPQGFPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPIGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQ-PPPPPPN 341

Query: 361 MG 363
           MG
Sbjct: 361 MG 341

[Close]
BLAST of Lsi03G019850 vs. NCBI nr
Match: XP_008442733.1 (PREDICTED: splicing factor 3A subunit 2 [Cucumis melo] >TYK25169.1 splicing factor 3A subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 617.5 bits (1591), Expect = 7.5e-173
Identity = 331/362 (91.44%), Postives = 335/362 (92.54%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNRPPMPPPPQ FPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQSFPGQGIRQ-PPPPPPN 341

Query: 361 MG 363
           MG
Sbjct: 361 MG 341

[Close]
BLAST of Lsi03G019850 vs. NCBI nr
Match: XP_038905938.1 (splicing factor 3A subunit 2 [Benincasa hispida])

HSP 1 Score: 614.0 bits (1582), Expect = 8.3e-172
Identity = 329/362 (90.88%), Postives = 334/362 (92.27%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
           PPVPAANGTVPSGAPPRP+PPPPQAP PPPPPPQQG PPRVPPPPMPGSLPPPPSVMANG
Sbjct: 241 PPVPAANGTVPSGAPPRPMPPPPQAPAPPPPPPQQGPPPRVPPPPMPGSLPPPPSVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNRPPMPPPPQGFPGQGIRQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRPPMPPPPQGFPGQGIRQ-PPPPPPN 341

Query: 361 MG 363
           MG
Sbjct: 361 MG 341

[Close]
BLAST of Lsi03G019850 vs. NCBI nr
Match: XP_023005145.1 (splicing factor 3A subunit 2 [Cucurbita maxima])

HSP 1 Score: 589.3 bits (1518), Expect = 2.2e-164
Identity = 320/362 (88.40%), Postives = 325/362 (89.78%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRK +                 
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRK-------------- 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF
Sbjct: 121 ------TVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP
Sbjct: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
             VPAANGTV       PLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPP VMANG
Sbjct: 241 QTVPAANGTV-------PLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANG 300

Query: 301 PPRPMPPGGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQPPPPPPPN 360
           PPRPMPPGGAPPIPPPPP+GNNTM NFTPGTQMNR PMPPPPQGFPGQG+RQ PPPPPPN
Sbjct: 301 PPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQ-PPPPPPN 334

Query: 361 MG 363
           MG
Sbjct: 361 MG 334

[Close]
BLAST of Lsi03G019850 vs. TAIR 10
Match: AT2G32600.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 395.6 bits (1015), Expect = 4.3e-110
Identity = 223/309 (72.17%), Postives = 236/309 (76.38%), Query Frame = 0 

Query: 1   MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60
           MDREWGSKPGSGGAAS QNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL
Sbjct: 1   MDREWGSKPGSGGAASGQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTL 60

Query: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKNTRNSEVKIPAFKASNINM 120
           HNNEGNYLAHTQGKRHQTNLAKRAAREAK+AP +PQP KR                N+++
Sbjct: 61  HNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTKPQPLKR----------------NVSV 120

Query: 121 YPIDSMSIKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPF 180
                 ++KIGRPGYRVTKQ+D E +QRSLLFQIEYPEIED  KPRHRFMSSYEQ+VQP+
Sbjct: 121 ----RRTVKIGRPGYRVTKQYDPELQQRSLLFQIEYPEIEDNIKPRHRFMSSYEQKVQPY 180

Query: 181 DKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKP 240
           DK YQYLLFAAEPYEIIAFKVPSTE+DKSTPKFFSHWDPDSKMFTLQ+YFK    E NKP
Sbjct: 181 DKSYQYLLFAAEPYEIIAFKVPSTEVDKSTPKFFSHWDPDSKMFTLQVYFKPTKPEPNKP 240

Query: 241 PPVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANG 300
                ANG                 PPPPPPPP Q  P   PPPP  G  PPPP  MAN 
Sbjct: 241 QSAVGANG----------------LPPPPPPPPHQAQP---PPPPPSGLFPPPPPPMANN 270

Query: 301 PPRPMPPGG 310
             RPMPP G
Sbjct: 301 GFRPMPPAG 270

[Close]
BLAST of Lsi03G019850 vs. TAIR 10
Match: AT5G07740.1 (actin binding )

HSP 1 Score: 44.7 bits (104), Expect = 1.9e-04
Identity = 65/130 (50.00%), Postives = 69/130 (53.08%), Query Frame = 0 

Query: 240  PPPVPAANGTVPSGAPPRPLPPPPQ--APPPPPPPPQQ-GAPPRVPPPPMPGSLPPPPSV 299
            PPP P  +G    GAPP P PPP    APPPPPPPP   GAPP  PPPPM G  PPPP  
Sbjct: 1046 PPPPPPMHG----GAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP 1105

Query: 300  MANGPPRPMPP----GGAPPIPPPPPIGNNTMVNFTPGTQMNRPPMPPPPQGFPGQGIRQ 359
               G  +P PP    GGAPP PPPPP+         P  +   PP PPPP          
Sbjct: 1106 PMFGGAQPPPPPPMRGGAPP-PPPPPMRGGAPPPPPPPMRGGAPPPPPPPMHGGA----- 1165

Query: 360  PPPPPPPNMG 363
            PPPPPPP  G
Sbjct: 1166 PPPPPPPMRG 1165

The following BLAST results are available for this feature:
BLAST of Lsi03G019850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q154281.1e-7353.13Splicing factor 3A subunit 2 OS=Homo sapiens OX=9606 GN=SF3A2 PE=1 SV=2[more]
A5PJN87.0e-7352.86Splicing factor 3A subunit 2 OS=Bos taurus OX=9913 GN=SF3A2 PE=2 SV=1[more]
Q6AXT89.2e-7353.78Splicing factor 3A subunit 2 OS=Rattus norvegicus OX=10116 GN=Sf3a2 PE=2 SV=1[more]
Q622032.2e-6651.32Splicing factor 3A subunit 2 OS=Mus musculus OX=10090 GN=Sf3a2 PE=1 SV=2[more]
Q54B654.6e-6457.14Splicing factor 3A subunit 2 OS=Dictyostelium discoideum OX=44689 GN=sf3a2 PE=3 ... [more]
BLAST of Lsi03G019850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQW85.6e-17491.99Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A0A0LEB11.3e-17391.71Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743440... [more]
A0A5D3DPC73.6e-17391.44Splicing factor 3A subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3B7293.6e-17391.44splicing factor 3A subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486522 PE=3 SV=1[more]
A0A6J1KWM21.1e-16488.40splicing factor 3A subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111498269 PE=3 SV... [more]
BLAST of Lsi03G019850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043971.11.2e-17391.99splicing factor 3A subunit 2 [Cucumis melo var. makuwa][more]
XP_004137848.12.6e-17391.71splicing factor 3A subunit 2 [Cucumis sativus] >KGN59007.1 hypothetical protein ... [more]
XP_008442733.17.5e-17391.44PREDICTED: splicing factor 3A subunit 2 [Cucumis melo] >TYK25169.1 splicing fact... [more]
XP_038905938.18.3e-17290.88splicing factor 3A subunit 2 [Benincasa hispida][more]
XP_023005145.12.2e-16488.40splicing factor 3A subunit 2 [Cucurbita maxima][more]
BLAST of Lsi03G019850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G32600.14.3e-11072.17hydroxyproline-rich glycoprotein family protein [more]
AT5G07740.11.9e-0450.00actin binding [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 235..256
score: 30.91
coord: 275..292
score: 33.33
coord: 256..272
score: 50.59
coord: 297..322
score: 27.69
NoneNo IPR availableSMARTSM01050CactinC_cactus_3coord: 122..236
e-value: 2.2E-11
score: 53.8
NoneNo IPR availablePFAMPF12874zf-metcoord: 52..76
e-value: 2.1E-6
score: 27.9
NoneNo IPR availableGENE3D2.60.40.2690coord: 114..239
e-value: 4.4E-38
score: 132.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 46..89
e-value: 3.6E-5
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 333..362
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..362
NoneNo IPR availablePANTHERPTHR23205SPLICING FACTOR 3A SUBUNIT 2coord: 1..355
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 49..83
e-value: 9.0E-8
score: 41.8
IPR031781SF3A2 domainPFAMPF16835SF3A2coord: 130..224
e-value: 8.6E-35
score: 119.0
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 52..82
score: 9.295713
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 48..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G019850.1Lsi03G019850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000245 spliceosomal complex assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding