Lsi03G019040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G019040
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSolute carrier family 35 member F2-like
Locationchr03: 30389353 .. 30389658 (-)
RNA-Seq ExpressionLsi03G019040
SyntenyLsi03G019040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCGCCAGAGTTCCGGTGGAAATCGAAGAAGATGACGAACTCTTTGAGATCGATCTTGAGGCCGTTAACAGCATTATTTCACCGTCGCATTTCTCTGACGATACTTACGGTTTCTTCACGGCTGCCGGTGGCACCACGCTTCTTGCCAATTGTTTGTTGCCGATCACCGAAGTGTCCAATGCTGTTCCGATGGACGATTCCAACGAATGCAAGATGTTTCTGTTTCCAATGCTGCCGCAGCCGACATGTCTGGAGGAGGTTCTTAAGTTGCCGTTGGGTTTTGGCCTTGTCGGGCTTTGA

mRNA sequence

ATGGCCTCCGCCAGAGTTCCGGTGGAAATCGAAGAAGATGACGAACTCTTTGAGATCGATCTTGAGGCCGTTAACAGCATTATTTCACCGTCGCATTTCTCTGACGATACTTACGGTTTCTTCACGGCTGCCGGTGGCACCACGCTTCTTGCCAATTGTTTGTTGCCGATCACCGAAGTGTCCAATGCTGTTCCGATGGACGATTCCAACGAATGCAAGATGTTTCTGTTTCCAATGCTGCCGCAGCCGACATGTCTGGAGGAGGTTCTTAAGTTGCCGTTGGGTTTTGGCCTTGTCGGGCTTTGA

Coding sequence (CDS)

ATGGCCTCCGCCAGAGTTCCGGTGGAAATCGAAGAAGATGACGAACTCTTTGAGATCGATCTTGAGGCCGTTAACAGCATTATTTCACCGTCGCATTTCTCTGACGATACTTACGGTTTCTTCACGGCTGCCGGTGGCACCACGCTTCTTGCCAATTGTTTGTTGCCGATCACCGAAGTGTCCAATGCTGTTCCGATGGACGATTCCAACGAATGCAAGATGTTTCTGTTTCCAATGCTGCCGCAGCCGACATGTCTGGAGGAGGTTCTTAAGTTGCCGTTGGGTTTTGGCCTTGTCGGGCTTTGA

Protein sequence

MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEVSNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGLVGL
Homology
BLAST of Lsi03G019040 vs. ExPASy TrEMBL
Match: A0A6J1FAF9 (uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC111442274 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1   MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
           MAS+ VPVEIEEDDELFEIDLEAVNSIISP HF +DTYGFFTA GG  LLANCLLPI+++
Sbjct: 16  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 75

Query: 61  SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
           SNAVPM DS + +MF F   P+PT LE+  +LPLGFGL
Sbjct: 76  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGL 113

BLAST of Lsi03G019040 vs. ExPASy TrEMBL
Match: A0A0A0LEJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.9e-31
Identity = 73/98 (74.49%), Postives = 84/98 (85.71%), Query Frame = 0

Query: 1  MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
          MAS   P+EIEEDD+LFEIDLEAVNSIISP +FSDDT GFFT AG TTLLANCLLPIT+V
Sbjct: 1  MASGIDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITDV 60

Query: 61 SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          S+AVP+ DSNEC++FLF M  +PT LE+ L+LPLGF L
Sbjct: 61 SSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFEL 98

BLAST of Lsi03G019040 vs. ExPASy TrEMBL
Match: A0A6J1IYI1 (uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.3e-31
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
          MAS+ VPVEIEEDDELFEIDLEAVNSIISP HFS+DTY FFTA GG  LLANCLLPI+++
Sbjct: 1  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFSEDTYCFFTATGGAALLANCLLPISDL 60

Query: 61 SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          SNAVPM DS + +MF F   P+PT LE+  +LPLGFGL
Sbjct: 61 SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGL 98

BLAST of Lsi03G019040 vs. ExPASy TrEMBL
Match: A0A5A7TQP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003790 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MASARV-PVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITE 60
          MAS  V PVEIEEDD+LFEIDLEAVNSI SP +FSDD  GFFT AGG TLLANCLLPIT+
Sbjct: 1  MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61 VSNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          VSNAVP+ DSNE ++FLF M  +PT LE+ L+LPLG GL
Sbjct: 61 VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGL 99

BLAST of Lsi03G019040 vs. ExPASy TrEMBL
Match: A0A1S3B7E8 (uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1  MASARV-PVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITE 60
          MAS  V PVEIEEDD+LFEIDLEAVNSI SP +FSDD  GFFT AGG TLLANCLLPIT+
Sbjct: 1  MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61 VSNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          VSNAVP+ DSNE ++FLF M  +PT LE+ L+LPLG GL
Sbjct: 61 VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGL 99

BLAST of Lsi03G019040 vs. NCBI nr
Match: XP_038906322.1 (uncharacterized protein LOC120092165 [Benincasa hispida])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1  MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
          MASA VPVEIEEDDELFEIDL+ VN+IISPSH SDDTYGFF AAGGTTLLANCLLPIT+V
Sbjct: 1  MASAGVPVEIEEDDELFEIDLDTVNNIISPSHSSDDTYGFFRAAGGTTLLANCLLPITDV 60

Query: 61 SNAVPMDDSNEC-KMFLFPMLPQPTCLEEVLKLPLGFGL 99
          SNA+PM DSN+C +M LF M P+PT LE VL+L LGFGL
Sbjct: 61 SNAIPMGDSNKCSEMSLFAMPPKPTHLETVLQLLLGFGL 99

BLAST of Lsi03G019040 vs. NCBI nr
Match: XP_022935370.1 (uncharacterized protein LOC111442274 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-31
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1   MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
           MAS+ VPVEIEEDDELFEIDLEAVNSIISP HF +DTYGFFTA GG  LLANCLLPI+++
Sbjct: 16  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 75

Query: 61  SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
           SNAVPM DS + +MF F   P+PT LE+  +LPLGFGL
Sbjct: 76  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGL 113

BLAST of Lsi03G019040 vs. NCBI nr
Match: XP_023529132.1 (uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 hypothetical protein SDJN03_20692, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017447.1 hypothetical protein SDJN02_19312, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-31
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
          MAS+ VPVEIEEDDELFEIDLEAVNSIISP HF +DTYGFFTA GG  LLANCLLPI+++
Sbjct: 1  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 60

Query: 61 SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          SNAVPM DS + +MF F   P+PT LE+  +LPLGFGL
Sbjct: 61 SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGL 98

BLAST of Lsi03G019040 vs. NCBI nr
Match: KGN59122.1 (hypothetical protein Csa_001117 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-31
Identity = 73/98 (74.49%), Postives = 84/98 (85.71%), Query Frame = 0

Query: 1  MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
          MAS   P+EIEEDD+LFEIDLEAVNSIISP +FSDDT GFFT AG TTLLANCLLPIT+V
Sbjct: 1  MASGIDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITDV 60

Query: 61 SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          S+AVP+ DSNEC++FLF M  +PT LE+ L+LPLGF L
Sbjct: 61 SSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFEL 98

BLAST of Lsi03G019040 vs. NCBI nr
Match: XP_022983162.1 (uncharacterized protein LOC111481795 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 8.9e-31
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0

Query: 1  MASARVPVEIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEV 60
          MAS+ VPVEIEEDDELFEIDLEAVNSIISP HFS+DTY FFTA GG  LLANCLLPI+++
Sbjct: 1  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFSEDTYCFFTATGGAALLANCLLPISDL 60

Query: 61 SNAVPMDDSNECKMFLFPMLPQPTCLEEVLKLPLGFGL 99
          SNAVPM DS + +MF F   P+PT LE+  +LPLGFGL
Sbjct: 61 SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGL 98

BLAST of Lsi03G019040 vs. TAIR 10
Match: AT2G36295.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 9  EIEEDDELFEIDLEAVNSIISPSHFSDDTYGFFTAAGGTTLLANCLLPITEVSNAVP 66
          E + +D+LFEI+LEAV+   +   +         A  G+ LLANCLLP  E+SNAVP
Sbjct: 32 EEDGEDDLFEINLEAVSDTATSPPYDCQR---LPARTGSVLLANCLLPAAEISNAVP 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FAF91.5e-3173.47uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC1114422... [more]
A0A0A0LEJ91.9e-3174.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1[more]
A0A6J1IYI14.3e-3173.47uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795... [more]
A0A5A7TQP61.1e-2973.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7E81.1e-2973.74uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=... [more]
Match NameE-valueIdentityDescription
XP_038906322.11.5e-3379.80uncharacterized protein LOC120092165 [Benincasa hispida][more]
XP_022935370.13.1e-3173.47uncharacterized protein LOC111442274 [Cucurbita moschata][more]
XP_023529132.13.1e-3173.47uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 ... [more]
KGN59122.14.0e-3174.49hypothetical protein Csa_001117 [Cucumis sativus][more]
XP_022983162.18.9e-3173.47uncharacterized protein LOC111481795 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT2G36295.11.8e-0545.61unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G019040.1Lsi03G019040.1mRNA