Lsi03G018980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G018980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain-containing protein
Locationchr03: 30356440 .. 30357685 (+)
RNA-Seq ExpressionLsi03G018980
SyntenyLsi03G018980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACACTTGCCAGTTGAAGTTATTGGAAACATACTTTCTCATCTAAAATATGCTAGAGATGCGGTGATTGCTTCAGTTACTTGTAGGAAATGGAGAGAGGCTTGGCAGAATCACCTCCATTCTTTGACCTTCAACTCGAATGATTGGCCTGATCCTGATGACCCAATGACCTTGGAAGTTATAATAACACAAACAATACTTCAGACCACTGGACTTCAGAACTTGTCCATTTTCATGGATGATGATGTAGATGCATTCTCGGCTTCCTCAGTGATTTCTTGGCTCATGTATACGAGAGACACAATTTGTCAACTACATTATAATGTGAATACTATTCCAAGTATCAATATAATTGACAAGTGCGGTCGACAAAAACTAGAAATGTTGGCATTGGCTAATAATCCTATAAGTGGCATCGAACCAACTTATTCATAAGTTTCCTTGCTTGAAATCTTTATCACTCAGTAATATCATCATATCTGCATTAGATTTGAACCTTCTTCTCGCAGCTTGTCCGAAGCTTGAAAAGTTAGCTCTAATCAACCCGGAAATTGTGATGTCACATGAGCAGACAACAATGGAACTTAGCAGTTCTTCATTGAAGGATATCTTTGTTGAAACCCAGAAGTTCATATTAGAGGCTGATACCCTTGAAATTTTACATTTAAAAGAATGTGCTCTGGATATCTTTGAGCTAAATGGCAAAGGAACTCTAAGAGTCCTGAAGATCGACGATTTTAGTGGTTTCCAACTGGATATAGGCGAGACTCAAAATCTTGAAATTGTGGACGTTTGCAATCTTGCTATAGTGTGGCAGAAATTCTATCCTATGATCTCAAAGGCATCAAAGTTGAAGAAGCTTCGGCTATGGGGTGCAGCATTTGATGATAGTAATGAAGATGTGGATTTGGACTCAATTTCCATCTCTTTCCCCAAGTTAAGCTATTTATCTTTGTGTTATGATATAAGACATGGAACCTTTGATCATAACTTGCAGAAAGCGTTTCAGATGGAGAATGTGACCATACTAGAACTTGGATGGAGTGAGATTAGTTATCTCTTCTCTAACTGGGTGGCGAAGCTCCTTGAAAAATGTCCTAAGTTGAAGAAATTGATAATTTGTGGGGTTGTATCAGAGACTAATACCCACGAGGAATGCCAAACTTTAGCACACTTTACCACATCTTTCGTTCAACTTATGAGAAAATATCAGCATATTGAGGTCCAGTTTGATTTTGAATAG

mRNA sequence

ATGGAACACTTGCCAGTTGAAGTTATTGGAAACATACTTTCTCATCTAAAATATGCTAGAGATGCGGTGATTGCTTCAGTTACTTGTAGGAAATGGAGAGAGGCTTGGCAGAATCACCTCCATTCTTTGACCTTCAACTCGAATGATTGGCCTGATCCTGATGACCCAATGACCTTGGAAGTTATAATAACACAAACAATACTTCAGACCACTGGACTTCAGAACTTGTCCATTTTCATGGATGATGATGTAGATGCATTCTCGGCTTCCTCAGTGATTTCTTGGCTCATTAATATCATCATATCTGCATTAGATTTGAACCTTCTTCTCGCAGCTTGTCCGAAGCTTGAAAAGTTAGCTCTAATCAACCCGGAAATTGTGATGTCACATGAGCAGACAACAATGGAACTTAGCAGTTCTTCATTGAAGGATATCTTTGTTGAAACCCAGAAGTTCATATTAGAGGCTGATACCCTTGAAATTTTACATTTAAAAGAATGTGCTCTGGATATCTTTGAGCTAAATGGCAAAGGAACTCTAAGAGTCCTGAAGATCGACGATTTTAGTGGTTTCCAACTGGATATAGGCGAGACTCAAAATCTTGAAATTGTGGACGTTTGCAATCTTGCTATAGTGTGGCAGAAATTCTATCCTATGATCTCAAAGGCATCAAAGTTGAAGAAGCTTCGGCTATGGGGTGCAGCATTTGATGATAGTAATGAAGATGTGGATTTGGACTCAATTTCCATCTCTTTCCCCAAGTTAAGCTATTTATCTTTGTGTTATGATATAAGACATGGAACCTTTGATCATAACTTGCAGAAAGCGTTTCAGATGGAGAATGTGACCATACTAGAACTTGGATGGAGTGAGATTAGTTATCTCTTCTCTAACTGGGTGGCGAAGCTCCTTGAAAAATGTCCTAAGTTGAAGAAATTGATAATTTGTGGGGTTGTATCAGAGACTAATACCCACGAGGAATGCCAAACTTTAGCACACTTTACCACATCTTTCGTTCAACTTATGAGAAAATATCAGCATATTGAGGTCCAGTTTGATTTTGAATAG

Coding sequence (CDS)

ATGGAACACTTGCCAGTTGAAGTTATTGGAAACATACTTTCTCATCTAAAATATGCTAGAGATGCGGTGATTGCTTCAGTTACTTGTAGGAAATGGAGAGAGGCTTGGCAGAATCACCTCCATTCTTTGACCTTCAACTCGAATGATTGGCCTGATCCTGATGACCCAATGACCTTGGAAGTTATAATAACACAAACAATACTTCAGACCACTGGACTTCAGAACTTGTCCATTTTCATGGATGATGATGTAGATGCATTCTCGGCTTCCTCAGTGATTTCTTGGCTCATTAATATCATCATATCTGCATTAGATTTGAACCTTCTTCTCGCAGCTTGTCCGAAGCTTGAAAAGTTAGCTCTAATCAACCCGGAAATTGTGATGTCACATGAGCAGACAACAATGGAACTTAGCAGTTCTTCATTGAAGGATATCTTTGTTGAAACCCAGAAGTTCATATTAGAGGCTGATACCCTTGAAATTTTACATTTAAAAGAATGTGCTCTGGATATCTTTGAGCTAAATGGCAAAGGAACTCTAAGAGTCCTGAAGATCGACGATTTTAGTGGTTTCCAACTGGATATAGGCGAGACTCAAAATCTTGAAATTGTGGACGTTTGCAATCTTGCTATAGTGTGGCAGAAATTCTATCCTATGATCTCAAAGGCATCAAAGTTGAAGAAGCTTCGGCTATGGGGTGCAGCATTTGATGATAGTAATGAAGATGTGGATTTGGACTCAATTTCCATCTCTTTCCCCAAGTTAAGCTATTTATCTTTGTGTTATGATATAAGACATGGAACCTTTGATCATAACTTGCAGAAAGCGTTTCAGATGGAGAATGTGACCATACTAGAACTTGGATGGAGTGAGATTAGTTATCTCTTCTCTAACTGGGTGGCGAAGCTCCTTGAAAAATGTCCTAAGTTGAAGAAATTGATAATTTGTGGGGTTGTATCAGAGACTAATACCCACGAGGAATGCCAAACTTTAGCACACTTTACCACATCTTTCGTTCAACTTATGAGAAAATATCAGCATATTGAGGTCCAGTTTGATTTTGAATAG

Protein sequence

MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMTLEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWLINIIISALDLNLLLAACPKLEKLALINPEIVMSHEQTTMELSSSSLKDIFVETQKFILEADTLEILHLKECALDIFELNGKGTLRVLKIDDFSGFQLDIGETQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAAFDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYLFSNWVAKLLEKCPKLKKLIICGVVSETNTHEECQTLAHFTTSFVQLMRKYQHIEVQFDFE
Homology
BLAST of Lsi03G018980 vs. ExPASy Swiss-Prot
Match: Q9ZW88 (F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 PE=2 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 2.2e-103
Identity = 213/420 (50.71%), Postives = 272/420 (64.76%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           M++LPVEVIGNILS L  ARD VIAS TCRKWREA + HL +L+FNS DWP   D  T  
Sbjct: 1   MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QT GLQ LSI M DD + FSA++VI+WL                   +NI
Sbjct: 61  LEILITQTIFQTMGLQGLSIMM-DDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISALDLNLLL+ACP +E L
Sbjct: 121 LEICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIF---VETQKFILEADTLEILHLKECALDIFELNG 240
            L++ EI MS  Q T+ELSS +LK ++   +   KFILEAD++E LH+K+C L++FEL G
Sbjct: 181 ELVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGET-QNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
            GTL+  K+DD S   LDI ET ++LE+VDV +  +VW KFY MIS++ KLKKLRLW   
Sbjct: 241 NGTLKHFKLDDVSVIHLDIMETSESLEVVDVNHFTMVWPKFYQMISRSQKLKKLRLWDVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E +D++SI+  F  L++LSL YD++ G   ++LQ   Q+ENVT+LELGW+ I+ +
Sbjct: 301 FDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDV 360

BLAST of Lsi03G018980 vs. ExPASy TrEMBL
Match: A0A6J1CTB9 (F-box/LRR-repeat protein At1g67190-like OS=Momordica charantia OX=3673 GN=LOC111014389 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 2.4e-137
Identity = 278/421 (66.03%), Postives = 305/421 (72.45%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDD--PMT 60
           MEHLPVEVIGNILSHLK ARD VIAS TC+KWREAW+NHLH+LTFNSNDWP P D    T
Sbjct: 1   MEHLPVEVIGNILSHLKAARDVVIASATCKKWREAWRNHLHTLTFNSNDWPIPHDLSTST 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE+IITQTILQTTGLQNLS+FM DD DAFSASSVI+WL                   +NI
Sbjct: 61  LEIIITQTILQTTGLQNLSVFM-DDFDAFSASSVIAWLMYTRDTLCRLHYNVETTPSVNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           I                                        ISALDLNLLL ACPKLEKL
Sbjct: 121 IEKCGRQKLETLELANNSITGVEPTYQKFPCLKSLSLSDIGISALDLNLLLTACPKLEKL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVE---TQKFILEADTLEILHLKECALDIFELNG 240
           ALINPE+VMS  Q T+ELSSSSLKD+FVE     KF L+AD LEILHL++C LD FEL G
Sbjct: 181 ALINPEVVMSDAQPTIELSSSSLKDVFVEGLSLDKFTLQADILEILHLRDCILDFFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KG LRVLKIDD S   LDIGE T+NLEIVDVCN  I+W KFY  ISKAS LKKLRLWG A
Sbjct: 241 KGALRVLKIDDASVIHLDIGENTENLEIVDVCNFTIMWPKFYHTISKASMLKKLRLWGVA 300

Query: 301 FDDSNED-VDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISY 356
           FDD +++ VDLD+ISISFPKLS+LSL YD++HG   HNLQ++ +MENVTILELGWS+I  
Sbjct: 301 FDDDDDEVVDLDTISISFPKLSHLSLSYDLKHGAVHHNLQRSSRMENVTILELGWSDI-- 360

BLAST of Lsi03G018980 vs. ExPASy TrEMBL
Match: A0A5B7APK3 (F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_027725 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 6.6e-119
Identity = 244/420 (58.10%), Postives = 287/420 (68.33%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDD--PMT 60
           ME LPVEVIGNILS L  ARD VIAS TCRKWREAW+NHLH+L FNSNDWP   D     
Sbjct: 1   MECLPVEVIGNILSRLGAARDVVIASATCRKWREAWRNHLHTLLFNSNDWPVYHDLTASR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QTTGLQ LSI M DDVD FSA+ VI+WL                   INI
Sbjct: 61  LEILITQTIFQTTGLQCLSIVM-DDVDEFSAAPVIAWLMYTRETLRQLCYNVRTTPNINI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISALDL+LLL  CPK+E L
Sbjct: 121 LEKCGRQKLEVLVLAHNSITGVEPSYQKFPCLKYLSLSYVSISALDLSLLLTVCPKIEFL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALIN +I MS  QTTMELSS  LKDI+VE     KFILEAD+LE LHLK+C L+ FEL G
Sbjct: 181 ALINLDIAMSDAQTTMELSSLPLKDIYVEAMSLDKFILEADSLEKLHLKDCTLEAFELVG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KGTLR+LKIDD S   LDIGE T+NLE+VDV N  I+W KF+ MIS++SKL++LRLWG  
Sbjct: 241 KGTLRLLKIDDVSVIHLDIGESTENLEVVDVSNFTIMWAKFHHMISRSSKLRRLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++IS+ FP LS+LSLCYD+R G   + LQ  FQ+ENV +LELGW+ IS L
Sbjct: 301 FDDEDEVVDLETISVCFPLLSHLSLCYDLRDGALQYGLQGLFQLENVVVLELGWTVISDL 360

BLAST of Lsi03G018980 vs. ExPASy TrEMBL
Match: A0A5B7AR14 (F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_027727 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.1e-118
Identity = 242/420 (57.62%), Postives = 289/420 (68.81%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           ME+LPVEVIGNILS L  ARD VIAS TCRKWREAW+NHLH+L+FNSNDWP   D  T  
Sbjct: 1   MEYLPVEVIGNILSCLGAARDVVIASATCRKWREAWRNHLHTLSFNSNDWPVYHDLTTSR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QT GLQ LSI M DDVD FSA+ VI+WL                   INI
Sbjct: 61  LEILITQTIFQTRGLQYLSIIM-DDVDEFSAAPVIAWLMYTRETLRQLSYNVRTSPNINI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISA+DL+LLL  CPK+E L
Sbjct: 121 LEKCGRQKLEFLALAHNSITGVEPSYQKFPCLKYLSLSYVSISAMDLSLLLTVCPKIEFL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALIN +I MS  QTTMELSS  LKDI+VE     KFILEAD+LE LHLK+C L++FEL G
Sbjct: 181 ALINLDIAMSDAQTTMELSSLPLKDIYVEAISLDKFILEADSLEKLHLKDCTLEVFELVG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KGTLR+LKIDD S   LDIGE T+NLE+VDV N  I+W KF+ MIS++SKL++LRLWG  
Sbjct: 241 KGTLRLLKIDDVSVIHLDIGESTENLEVVDVSNFTIMWAKFHHMISRSSKLRRLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FD+ +E VDL+++S+ FP LS+LSLCYD+R G   + LQ  FQ+ENV +LELGW+ IS L
Sbjct: 301 FDNEDEVVDLETVSVCFPLLSHLSLCYDLRDGALQYGLQGPFQLENVVVLELGWTVISDL 360

BLAST of Lsi03G018980 vs. ExPASy TrEMBL
Match: A0A6J1ECL6 (F-box/LRR-repeat protein At1g67190-like OS=Cucurbita moschata OX=3662 GN=LOC111433095 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.9e-118
Identity = 237/420 (56.43%), Postives = 291/420 (69.29%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           MEHLPVEVIGNILS L+ ARDAVIAS TC+KWREAW+NHLH+L+F+S+DWP   +  T  
Sbjct: 1   MEHLPVEVIGNILSQLRGARDAVIASATCKKWREAWRNHLHTLSFDSHDWPVYHELSTSR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWLI-------------------NI 120
           LE++ITQTI QTT LQ+L+I M D+VD FSA+ V++WL+                   NI
Sbjct: 61  LEILITQTIFQTTALQHLAISM-DEVDEFSAAPVMAWLMYTRDTLRQLHYNVKTTPIFNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           I                                        +S LDL+LLL  CPKLEKL
Sbjct: 121 IEKCGRQKLEVLALAHNSITGVEPSYQKFPCLKSLSLSHVSVSTLDLSLLLTTCPKLEKL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALI+P+I MS     ME+SSSSLKDI+VE     KFILEADTLE +HLK+C L++FE+  
Sbjct: 181 ALISPDIAMS----DMEVSSSSLKDIYVEAISLDKFILEADTLEAMHLKDCTLELFEVVS 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KG LRVL+IDD S   LDIGE T+NLE+VDVCN  I+W KFY MISK+SKL+KLRLWG  
Sbjct: 241 KGALRVLRIDDVSVIHLDIGENTENLEVVDVCNFTIMWPKFYHMISKSSKLRKLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++I + FP+LS+LSLCYD++ GT  H+LQ +  + NV +LELGWS +S  
Sbjct: 301 FDDDDEVVDLETICMCFPRLSHLSLCYDLKDGTLQHSLQGSSHLLNVVVLELGWSVVSEF 360

BLAST of Lsi03G018980 vs. ExPASy TrEMBL
Match: A0A5J4ZHC5 (F-box domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_016783 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 5.6e-118
Identity = 239/420 (56.90%), Postives = 288/420 (68.57%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           ME+LPVEVIGNILS L  ARD V+AS TCRKWREAW+NHLHSL+FNSNDWP   D  T  
Sbjct: 1   MEYLPVEVIGNILSCLGAARDVVVASATCRKWREAWRNHLHSLSFNSNDWPVYHDLTTGR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QTTGLQ LSI M DDVD FSA+ VI+WL                   IN+
Sbjct: 61  LEILITQTIFQTTGLQCLSILM-DDVDEFSAAPVIAWLMYTKETLRQLHYNVRTTPNINV 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISALDL+LLL  CPK+E L
Sbjct: 121 LEKCGRQKLEVLALAHNSITGVEPSYLKFPCLKSLSMTYVSISALDLSLLLTICPKIEFL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALIN +I MS  QT MELSS SLKDI+ E     KFILE D+LE LH+K+C  ++FEL G
Sbjct: 181 ALINLDIAMSDAQTPMELSSPSLKDIYAEAISLDKFILEVDSLEKLHMKDCTFEVFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KGTLR+LKIDD S   LDIGE T+NLE+VDV N  I+W KF+ MIS++SKL++LRLWG  
Sbjct: 241 KGTLRLLKIDDVSVIHLDIGENTENLEVVDVSNFTIMWAKFHHMISRSSKLRRLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++IS+ FP LS+LSLCYD+R G   + LQ  FQ+ENV +LELGW+ IS L
Sbjct: 301 FDDEDEVVDLETISVCFPLLSHLSLCYDLRDGAIQYGLQSTFQLENVAVLELGWTVISDL 360

BLAST of Lsi03G018980 vs. NCBI nr
Match: XP_022144792.1 (F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144793.1 F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144794.1 F-box/LRR-repeat protein At1g67190-like [Momordica charantia])

HSP 1 Score: 498.4 bits (1282), Expect = 5.0e-137
Identity = 278/421 (66.03%), Postives = 305/421 (72.45%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDD--PMT 60
           MEHLPVEVIGNILSHLK ARD VIAS TC+KWREAW+NHLH+LTFNSNDWP P D    T
Sbjct: 1   MEHLPVEVIGNILSHLKAARDVVIASATCKKWREAWRNHLHTLTFNSNDWPIPHDLSTST 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE+IITQTILQTTGLQNLS+FM DD DAFSASSVI+WL                   +NI
Sbjct: 61  LEIIITQTILQTTGLQNLSVFM-DDFDAFSASSVIAWLMYTRDTLCRLHYNVETTPSVNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           I                                        ISALDLNLLL ACPKLEKL
Sbjct: 121 IEKCGRQKLETLELANNSITGVEPTYQKFPCLKSLSLSDIGISALDLNLLLTACPKLEKL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVE---TQKFILEADTLEILHLKECALDIFELNG 240
           ALINPE+VMS  Q T+ELSSSSLKD+FVE     KF L+AD LEILHL++C LD FEL G
Sbjct: 181 ALINPEVVMSDAQPTIELSSSSLKDVFVEGLSLDKFTLQADILEILHLRDCILDFFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KG LRVLKIDD S   LDIGE T+NLEIVDVCN  I+W KFY  ISKAS LKKLRLWG A
Sbjct: 241 KGALRVLKIDDASVIHLDIGENTENLEIVDVCNFTIMWPKFYHTISKASMLKKLRLWGVA 300

Query: 301 FDDSNED-VDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISY 356
           FDD +++ VDLD+ISISFPKLS+LSL YD++HG   HNLQ++ +MENVTILELGWS+I  
Sbjct: 301 FDDDDDEVVDLDTISISFPKLSHLSLSYDLKHGAVHHNLQRSSRMENVTILELGWSDI-- 360

BLAST of Lsi03G018980 vs. NCBI nr
Match: XP_022925792.1 (F-box/LRR-repeat protein At1g67190-like [Cucurbita moschata] >XP_023544783.1 F-box/LRR-repeat protein At1g67190-like [Cucurbita pepo subsp. pepo] >KAG6604354.1 F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034504.1 F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 435.6 bits (1119), Expect = 4.0e-118
Identity = 237/420 (56.43%), Postives = 291/420 (69.29%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           MEHLPVEVIGNILS L+ ARDAVIAS TC+KWREAW+NHLH+L+F+S+DWP   +  T  
Sbjct: 1   MEHLPVEVIGNILSQLRGARDAVIASATCKKWREAWRNHLHTLSFDSHDWPVYHELSTSR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWLI-------------------NI 120
           LE++ITQTI QTT LQ+L+I M D+VD FSA+ V++WL+                   NI
Sbjct: 61  LEILITQTIFQTTALQHLAISM-DEVDEFSAAPVMAWLMYTRDTLRQLHYNVKTTPIFNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           I                                        +S LDL+LLL  CPKLEKL
Sbjct: 121 IEKCGRQKLEVLALAHNSITGVEPSYQKFPCLKSLSLSHVSVSTLDLSLLLTTCPKLEKL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALI+P+I MS     ME+SSSSLKDI+VE     KFILEADTLE +HLK+C L++FE+  
Sbjct: 181 ALISPDIAMS----DMEVSSSSLKDIYVEAISLDKFILEADTLEAMHLKDCTLELFEVVS 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KG LRVL+IDD S   LDIGE T+NLE+VDVCN  I+W KFY MISK+SKL+KLRLWG  
Sbjct: 241 KGALRVLRIDDVSVIHLDIGENTENLEVVDVCNFTIMWPKFYHMISKSSKLRKLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++I + FP+LS+LSLCYD++ GT  H+LQ +  + NV +LELGWS +S  
Sbjct: 301 FDDDDEVVDLETICMCFPRLSHLSLCYDLKDGTLQHSLQGSSHLLNVVVLELGWSVVSEF 360

BLAST of Lsi03G018980 vs. NCBI nr
Match: XP_038883045.1 (F-box/LRR-repeat protein At1g67190 [Benincasa hispida])

HSP 1 Score: 434.5 bits (1116), Expect = 8.9e-118
Identity = 236/420 (56.19%), Postives = 290/420 (69.05%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           MEHLPVEVIGNILS L+ ARDAVIASVTC+KWREAW+NHLH+L+F+S DWP   +  T  
Sbjct: 1   MEHLPVEVIGNILSQLRGARDAVIASVTCKKWREAWRNHLHTLSFDSRDWPVYHELSTSR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWLI-------------------NI 120
           LE++ITQTI QTT LQ+L+I M D+VD FSA+ V++WL+                   NI
Sbjct: 61  LEILITQTIFQTTALQHLAISM-DEVDEFSAAPVMAWLMYTRDTLRQLHYHVKTTPIFNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           I                                        +S LDL+LLL  CPKLEKL
Sbjct: 121 IEKCGRQKLEVLALAYNSITGVEPSYQKFPCLKSLSLNHVSVSTLDLSLLLTTCPKLEKL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALI+P+I MS     ME+SSSSLKDI+VE     KFILEADTLE++HLK+C L++FE+  
Sbjct: 181 ALISPDIAMS----DMEVSSSSLKDIYVEAISLDKFILEADTLEVMHLKDCTLELFEVVS 240

Query: 241 KGTLRVLKIDDFSGFQLDIGET-QNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KG LRVL+IDD S   LDIGE  +NLE+VDVCN  I+W KFY MISK+SKL+KLRLWG  
Sbjct: 241 KGALRVLRIDDVSVIHLDIGENMENLEVVDVCNFTIMWPKFYHMISKSSKLRKLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++I + FP+LS+LSLCYD++ G   H+LQ +  + NV +LELGWS +S  
Sbjct: 301 FDDDDEVVDLETICMCFPRLSHLSLCYDLKDGILQHSLQGSSNLLNVVVLELGWSVVSEF 360

BLAST of Lsi03G018980 vs. NCBI nr
Match: KAA8516711.1 (hypothetical protein F0562_016783 [Nyssa sinensis])

HSP 1 Score: 434.1 bits (1115), Expect = 1.2e-117
Identity = 239/420 (56.90%), Postives = 288/420 (68.57%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           ME+LPVEVIGNILS L  ARD V+AS TCRKWREAW+NHLHSL+FNSNDWP   D  T  
Sbjct: 1   MEYLPVEVIGNILSCLGAARDVVVASATCRKWREAWRNHLHSLSFNSNDWPVYHDLTTGR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QTTGLQ LSI M DDVD FSA+ VI+WL                   IN+
Sbjct: 61  LEILITQTIFQTTGLQCLSILM-DDVDEFSAAPVIAWLMYTKETLRQLHYNVRTTPNINV 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISALDL+LLL  CPK+E L
Sbjct: 121 LEKCGRQKLEVLALAHNSITGVEPSYLKFPCLKSLSMTYVSISALDLSLLLTICPKIEFL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALIN +I MS  QT MELSS SLKDI+ E     KFILE D+LE LH+K+C  ++FEL G
Sbjct: 181 ALINLDIAMSDAQTPMELSSPSLKDIYAEAISLDKFILEVDSLEKLHMKDCTFEVFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGE-TQNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KGTLR+LKIDD S   LDIGE T+NLE+VDV N  I+W KF+ MIS++SKL++LRLWG  
Sbjct: 241 KGTLRLLKIDDVSVIHLDIGENTENLEVVDVSNFTIMWAKFHHMISRSSKLRRLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++IS+ FP LS+LSLCYD+R G   + LQ  FQ+ENV +LELGW+ IS L
Sbjct: 301 FDDEDEVVDLETISVCFPLLSHLSLCYDLRDGAIQYGLQSTFQLENVAVLELGWTVISDL 360

BLAST of Lsi03G018980 vs. NCBI nr
Match: XP_022132399.1 (F-box/LRR-repeat protein At1g67190-like [Momordica charantia])

HSP 1 Score: 434.1 bits (1115), Expect = 1.2e-117
Identity = 233/420 (55.48%), Postives = 291/420 (69.29%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           MEHLPVEVIGNILS L+ ARDAVIAS TC+KWREAW+NHLH+L+F+S DWP   +  T  
Sbjct: 1   MEHLPVEVIGNILSQLRGARDAVIASATCKKWREAWRNHLHTLSFDSRDWPTYHELSTSR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWLI-------------------NI 120
           LE++ITQTI QTT LQNL+I M DDV+ FSA++V++WL+                   NI
Sbjct: 61  LEILITQTIFQTTALQNLAISM-DDVEEFSAAAVMAWLMYTRDTLRQLHYNVKTTPIFNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           I                                        +S+LDL+LLL  CPKLEKL
Sbjct: 121 IEKCGRQKLEVLALAHNSIAGVEPSYQKFPCLKSLSLSHVNVSSLDLSLLLTTCPKLEKL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIFVET---QKFILEADTLEILHLKECALDIFELNG 240
           ALI+P++ MS     ME+SS+SLKDI+VE     KF+LEADTLE++HLK+C L++FE+  
Sbjct: 181 ALISPDVAMS----DMEISSASLKDIYVEAISLDKFVLEADTLEVMHLKDCTLELFEVVS 240

Query: 241 KGTLRVLKIDDFSGFQLDIGET-QNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
           KG LRVL+IDD S   LDIGE  +NLE+VDVCN  I+W KFY MISK+SKL+KLRLWG  
Sbjct: 241 KGALRVLRIDDVSVIHLDIGENMENLEVVDVCNFTIMWPKFYHMISKSSKLRKLRLWGVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E VDL++I + FP+LS+LSLCYD++ G   H+LQ +  + NV +LELGWS ++  
Sbjct: 301 FDDEDEVVDLETICMCFPQLSHLSLCYDLKDGILQHSLQGSSPLLNVIVLELGWSVVNDF 360

BLAST of Lsi03G018980 vs. TAIR 10
Match: AT1G67190.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 377.1 bits (967), Expect = 1.6e-104
Identity = 213/420 (50.71%), Postives = 272/420 (64.76%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           M++LPVEVIGNILS L  ARD VIAS TCRKWREA + HL +L+FNS DWP   D  T  
Sbjct: 1   MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QT GLQ LSI M DD + FSA++VI+WL                   +NI
Sbjct: 61  LEILITQTIFQTMGLQGLSIMM-DDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISALDLNLLL+ACP +E L
Sbjct: 121 LEICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIF---VETQKFILEADTLEILHLKECALDIFELNG 240
            L++ EI MS  Q T+ELSS +LK ++   +   KFILEAD++E LH+K+C L++FEL G
Sbjct: 181 ELVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGET-QNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
            GTL+  K+DD S   LDI ET ++LE+VDV +  +VW KFY MIS++ KLKKLRLW   
Sbjct: 241 NGTLKHFKLDDVSVIHLDIMETSESLEVVDVNHFTMVWPKFYQMISRSQKLKKLRLWDVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E +D++SI+  F  L++LSL YD++ G   ++LQ   Q+ENVT+LELGW+ I+ +
Sbjct: 301 FDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDV 360

BLAST of Lsi03G018980 vs. TAIR 10
Match: AT1G67190.2 (F-box/RNI-like superfamily protein )

HSP 1 Score: 377.1 bits (967), Expect = 1.6e-104
Identity = 213/420 (50.71%), Postives = 272/420 (64.76%), Query Frame = 0

Query: 1   MEHLPVEVIGNILSHLKYARDAVIASVTCRKWREAWQNHLHSLTFNSNDWPDPDDPMT-- 60
           M++LPVEVIGNILS L  ARD VIAS TCRKWREA + HL +L+FNS DWP   D  T  
Sbjct: 1   MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNR 60

Query: 61  LEVIITQTILQTTGLQNLSIFMDDDVDAFSASSVISWL-------------------INI 120
           LE++ITQTI QT GLQ LSI M DD + FSA++VI+WL                   +NI
Sbjct: 61  LEILITQTIFQTMGLQGLSIMM-DDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNI 120

Query: 121 I----------------------------------------ISALDLNLLLAACPKLEKL 180
           +                                        ISALDLNLLL+ACP +E L
Sbjct: 121 LEICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESL 180

Query: 181 ALINPEIVMSHEQTTMELSSSSLKDIF---VETQKFILEADTLEILHLKECALDIFELNG 240
            L++ EI MS  Q T+ELSS +LK ++   +   KFILEAD++E LH+K+C L++FEL G
Sbjct: 181 ELVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIG 240

Query: 241 KGTLRVLKIDDFSGFQLDIGET-QNLEIVDVCNLAIVWQKFYPMISKASKLKKLRLWGAA 300
            GTL+  K+DD S   LDI ET ++LE+VDV +  +VW KFY MIS++ KLKKLRLW   
Sbjct: 241 NGTLKHFKLDDVSVIHLDIMETSESLEVVDVNHFTMVWPKFYQMISRSQKLKKLRLWDVV 300

Query: 301 FDDSNEDVDLDSISISFPKLSYLSLCYDIRHGTFDHNLQKAFQMENVTILELGWSEISYL 356
           FDD +E +D++SI+  F  L++LSL YD++ G   ++LQ   Q+ENVT+LELGW+ I+ +
Sbjct: 301 FDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDV 360

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZW882.2e-10350.71F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 ... [more]
Match NameE-valueIdentityDescription
A0A6J1CTB92.4e-13766.03F-box/LRR-repeat protein At1g67190-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A5B7APK36.6e-11958.10F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_027725 PE... [more]
A0A5B7AR141.1e-11857.62F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_027727 PE... [more]
A0A6J1ECL61.9e-11856.43F-box/LRR-repeat protein At1g67190-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A5J4ZHC55.6e-11856.90F-box domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_016783 PE=4... [more]
Match NameE-valueIdentityDescription
XP_022144792.15.0e-13766.03F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144793.1 F-... [more]
XP_022925792.14.0e-11856.43F-box/LRR-repeat protein At1g67190-like [Cucurbita moschata] >XP_023544783.1 F-b... [more]
XP_038883045.18.9e-11856.19F-box/LRR-repeat protein At1g67190 [Benincasa hispida][more]
KAA8516711.11.2e-11756.90hypothetical protein F0562_016783 [Nyssa sinensis][more]
XP_022132399.11.2e-11755.48F-box/LRR-repeat protein At1g67190-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G67190.11.6e-10450.71F-box/RNI-like superfamily protein [more]
AT1G67190.21.6e-10450.71F-box/RNI-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 4..45
e-value: 2.2E-6
score: 37.2
IPR001810F-box domainPFAMPF12937F-box-likecoord: 2..36
e-value: 8.8E-6
score: 25.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 36..349
e-value: 2.5E-12
score: 47.9
NoneNo IPR availablePANTHERPTHR31639:SF77F-BOX/LRR-REPEAT PROTEINcoord: 1..97
NoneNo IPR availablePANTHERPTHR31639:SF77F-BOX/LRR-REPEAT PROTEINcoord: 99..353
NoneNo IPR availablePANTHERPTHR31639F-BOX PROTEIN-LIKEcoord: 99..353
NoneNo IPR availablePANTHERPTHR31639F-BOX PROTEIN-LIKEcoord: 1..97
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 39..322
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 2..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G018980.1Lsi03G018980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding