Lsi03G018360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G018360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	chr03: 29812796 .. 29813431 (+)
RNA-Seq Expression	Lsi03G018360
Synteny	Lsi03G018360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAGCACACCTACCTCCGCCCGGAACACCACCACAACGACCGAGGCTGCAGCTTCGGCGGCGGCTGCTTCATCACCTTTCTCAAGATTCTCATCACCATCATCGTCGTTGTTGGTCTCGCCGTGTTGATCTTATGGCTCATATTCCGTCCCAATAAAGTCAAATTCAACCTCACCGACGCTAAACTCACCCAATTCAACCTAACCGACACCCAGCTCCATTACAACTTGGCTCTCAACGTCACCGTCAGAAACCCCAACAAGCGAATCGGAGTCTACTACGATACTATCGAAGCCGCCGCCGTTTACAAAGACCAGCGCCTACAGACCCAGTGGCTGCCGCCGTTTTACCAAGGCTACAAGACCACCGCCGTCATCAGCTCTGTTTTCTTCGGCCAGCAGCTCCTCCTCCTCGCTGGCCAGGGGCTGACGGAGTTCAACGCCGAGACAGTTGCCGGCGTCTACGAGATGAACGTGGAGCTTAATCTTCGGATAAGGTTGAAGTTCGGCGCCGTTAGGATCGGGAAGTTTAAGCCGAAGGTGAATTGTGAGTTCAAAGTTCCGTTGAGTTCCGATGGAAGCTCAGTTGGTTCGGTGTTTCAGTCCACCGGCTGTGGTATTGATTATTGGTGA

mRNA sequence

ATGGGCAAGCACACCTACCTCCGCCCGGAACACCACCACAACGACCGAGGCTGCAGCTTCGGCGGCGGCTGCTTCATCACCTTTCTCAAGATTCTCATCACCATCATCGTCGTTGTTGGTCTCGCCGTGTTGATCTTATGGCTCATATTCCGTCCCAATAAAGTCAAATTCAACCTCACCGACGCTAAACTCACCCAATTCAACCTAACCGACACCCAGCTCCATTACAACTTGGCTCTCAACGTCACCGTCAGAAACCCCAACAAGCGAATCGGAGTCTACTACGATACTATCGAAGCCGCCGCCGTTTACAAAGACCAGCGCCTACAGACCCAGTGGCTGCCGCCGTTTTACCAAGGCTACAAGACCACCGCCGTCATCAGCTCTGTTTTCTTCGGCCAGCAGCTCCTCCTCCTCGCTGGCCAGGGGCTGACGGAGTTCAACGCCGAGACAGTTGCCGGCGTCTACGAGATGAACGTGGAGCTTAATCTTCGGATAAGGTTGAAGTTCGGCGCCGTTAGGATCGGGAAGTTTAAGCCGAAGGTGAATTGTGAGTTCAAAGTTCCGTTGAGTTCCGATGGAAGCTCAGTTGGTTCGGTGTTTCAGTCCACCGGCTGTGGTATTGATTATTGGTGA

Coding sequence (CDS)

ATGGGCAAGCACACCTACCTCCGCCCGGAACACCACCACAACGACCGAGGCTGCAGCTTCGGCGGCGGCTGCTTCATCACCTTTCTCAAGATTCTCATCACCATCATCGTCGTTGTTGGTCTCGCCGTGTTGATCTTATGGCTCATATTCCGTCCCAATAAAGTCAAATTCAACCTCACCGACGCTAAACTCACCCAATTCAACCTAACCGACACCCAGCTCCATTACAACTTGGCTCTCAACGTCACCGTCAGAAACCCCAACAAGCGAATCGGAGTCTACTACGATACTATCGAAGCCGCCGCCGTTTACAAAGACCAGCGCCTACAGACCCAGTGGCTGCCGCCGTTTTACCAAGGCTACAAGACCACCGCCGTCATCAGCTCTGTTTTCTTCGGCCAGCAGCTCCTCCTCCTCGCTGGCCAGGGGCTGACGGAGTTCAACGCCGAGACAGTTGCCGGCGTCTACGAGATGAACGTGGAGCTTAATCTTCGGATAAGGTTGAAGTTCGGCGCCGTTAGGATCGGGAAGTTTAAGCCGAAGGTGAATTGTGAGTTCAAAGTTCCGTTGAGTTCCGATGGAAGCTCAGTTGGTTCGGTGTTTCAGTCCACCGGCTGTGGTATTGATTATTGGTGA

Protein sequence

MGKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGSSVGSVFQSTGCGIDYW

Homology

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BLAST of Lsi03G018360 vs. ExPASy Swiss-Prot
Match: Q9FNH6 (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.3e-46
Identity = 100/212 (47.17%), Postives = 137/212 (64.62%), Query Frame = 0


Query: 11  HHHNDRGCSFG---------GGCFITFL-KILITIIVVVGLAVLILWLIFRPNKVKFNLT 70
           H H  RG   G         G C ++ +  ILITI V++G+A LI+WLIFRPN +KF++T
Sbjct: 21  HSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVT 80

Query: 71  DAKLTQFNLTDT-QLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRL-QTQWLPPFY 130
           DAKLT+F L  T  L YNL LN T+RNPN+RIGVYYD IE    Y DQR   +  +  FY
Sbjct: 81  DAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFY 140

Query: 131 QGYKTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKF 190
           QG+K T V+ +   GQQL+LL G    + N +  + +Y ++ +L L+IR KFG ++  +F
Sbjct: 141 QGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRF 200

Query: 191 KPKVNCEFKVPLSSDGSSVGSVFQSTGCGIDY 211
           KPK+ C+ KVPL+S+ +S G VFQ T C +D+
Sbjct: 201 KPKIKCDLKVPLTSNSTS-GFVFQPTKCDVDF 231

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BLAST of Lsi03G018360 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-42
Identity = 96/202 (47.52%), Postives = 135/202 (66.83%), Query Frame = 0


Query: 16  RGCSFGGGCFI--TFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNLT--D 75
           RG   G GC +   F+K++I++IV++G+A LI WLI RP  +KF++TDA LT+F+ T  D
Sbjct: 27  RGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPD 86

Query: 76  TQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTTAVISSVF 135
             L YNLAL V VRNPNKRIG+YYD IEA A Y+ +R  T  L PFYQG+K T V++  F
Sbjct: 87  NILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTF 146

Query: 136 FGQQLLLL-AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVP 195
            GQ L++  AGQ  T  NAE ++GVY + ++  LR+R K G ++  + KPKV+C + ++P
Sbjct: 147 QGQNLVIFNAGQSRT-LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLP 206

Query: 196 LS-SDGSSVGSVFQSTGCGIDY 211
           LS S+G++  S      C  D+
Sbjct: 207 LSTSNGTTTTSTVFPIKCDFDF 227

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BLAST of Lsi03G018360 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-38
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 22  GGCFITFL-KILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNL-TDTQLHYNLA 81
           G C ++ +  ILI + V++G+A LILWLIFRPN VKF + DA L +F+   +  LHY+L 
Sbjct: 48  GCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLD 107

Query: 82  LNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTTAVISSVFFGQQLLLL 141
           LN T+RNPN+R+GVYYD    +  Y DQR  +  +  FYQG+K T VI +   GQ L++L
Sbjct: 108 LNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVL 167

Query: 142 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGSSVG 201
                T+   +  +G+Y +N +L L +R KF  ++  K KPK+ C + K+PL S  S+ G
Sbjct: 168 GDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGG 227

Query: 202 SVFQSTGCGID 210
             FQ   C  D
Sbjct: 228 FKFQPVQCDFD 238

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BLAST of Lsi03G018360 vs. ExPASy Swiss-Prot
Match: Q9C615 (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.7e-23
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 51  RPNKVKFNLTDAKLTQFNL-TDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRL 110
           R N VKF + DA+LT F+L ++  L Y+L+LN+++RN    IG++YD  EA   Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 111 QTQWLPPFYQGYKTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLK 170
               +P FY G K T ++ ++F GQ L+LL G    +F  +   GVY ++V+L++  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 171 FGAVRIGKFKPKVNCEFKVPLSSDGSS 197
              +     KP V C  K+PL+   S+
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSN 149

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BLAST of Lsi03G018360 vs. ExPASy Swiss-Prot
Match: Q9SJ54 (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 54/185 (29.19%), Postives = 92/185 (49.73%), Query Frame = 0


Query: 15  DRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNLTDTQ- 74
           + G   GGG       ++I  I++V + + ++W+I +P K +F L DA +  FNL+    
Sbjct: 8   NHGGGGGGGTASRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNL 67

Query: 75  LHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQW-LPPFYQGYKTTAVISSVFF 134
           L  N  + +  RN N RIG+YYD +   A Y++Q++  +  +PP YQG+K   V S   +
Sbjct: 68  LTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVY 127

Query: 135 GQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSS 194
           G   + +A         E   G   + +  + R+R K G +  GK+   V C+  + L+ 
Sbjct: 128 GNS-VPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLAD 187

Query: 195 DGSSV 198
             + V
Sbjct: 188 KAAGV 191

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BLAST of Lsi03G018360 vs. ExPASy TrEMBL
Match: A0A0A0LE50 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778990 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 187/211 (88.63%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 2   GKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTD 61
           GKHTY RPEHHHN   CS GGG FITFLKILI II+VVGLAVLILWLIFRPNKVKFN+TD
Sbjct: 3   GKHTYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTD 62

Query: 62  AKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGY 121
           AKLTQFNL   QLHYNLALNVTVRNPNKRIGVYYD+IE++ +YKDQRL+TQWLPPFYQGY
Sbjct: 63  AKLTQFNLIGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGY 122

Query: 122 KTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 181
           KTTAVIS VF GQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK
Sbjct: 123 KTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 182

Query: 182 VNCEFKVPLSSDGSS-VGSVFQSTGCGIDYW 212
           VNCEFKVPLSSDG+S VGSVF+STGC IDYW
Sbjct: 183 VNCEFKVPLSSDGNSVVGSVFESTGCDIDYW 213

[Close]

BLAST of Lsi03G018360 vs. ExPASy TrEMBL
Match: A0A5A7TK31 (NDR1/HIN1-Like protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004470 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 186/211 (88.15%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 2   GKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTD 61
           GKHTY RPEHHHN   CS GGG FITFLKILI II+VVGLAVLILWLIFRPNKVKFN+TD
Sbjct: 3   GKHTYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTD 62

Query: 62  AKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGY 121
           AKLTQFNL D QLH+N ALNVTVRNPNKRIGVYYDTIE++A+YK+QRLQTQWLPPFYQGY
Sbjct: 63  AKLTQFNLIDNQLHFNFALNVTVRNPNKRIGVYYDTIESSAIYKNQRLQTQWLPPFYQGY 122

Query: 122 KTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 181
           KTTAVIS VF GQQLLLLAGQGLTEFNAE VAGVYEMN+ELNLRIRLKFGAVR+GKFKPK
Sbjct: 123 KTTAVISCVFSGQQLLLLAGQGLTEFNAERVAGVYEMNMELNLRIRLKFGAVRVGKFKPK 182

Query: 182 VNCEFKVPLSSDGSS-VGSVFQSTGCGIDYW 212
           VNCEFKVPLSSDGSS VGSVF+STGC IDYW
Sbjct: 183 VNCEFKVPLSSDGSSVVGSVFESTGCDIDYW 213

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BLAST of Lsi03G018360 vs. ExPASy TrEMBL
Match: A0A1S3B7J7 (NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103486670 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 186/211 (88.15%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 2   GKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTD 61
           GKHTY RPEHHHN   CS GGG FITFLKILI II+VVGLAVLILWLIFRPNKVKFN+TD
Sbjct: 3   GKHTYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTD 62

Query: 62  AKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGY 121
           AKLTQFNL D QLH+N ALNVTVRNPNKRIGVYYDTIE++A+YK+QRLQTQWLPPFYQGY
Sbjct: 63  AKLTQFNLIDNQLHFNFALNVTVRNPNKRIGVYYDTIESSAIYKNQRLQTQWLPPFYQGY 122

Query: 122 KTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 181
           KTTAVIS VF GQQLLLLAGQGLTEFNAE VAGVYEMN+ELNLRIRLKFGAVR+GKFKPK
Sbjct: 123 KTTAVISCVFSGQQLLLLAGQGLTEFNAERVAGVYEMNMELNLRIRLKFGAVRVGKFKPK 182

Query: 182 VNCEFKVPLSSDGSS-VGSVFQSTGCGIDYW 212
           VNCEFKVPLSSDGSS VGSVF+STGC IDYW
Sbjct: 183 VNCEFKVPLSSDGSSVVGSVFESTGCDIDYW 213

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BLAST of Lsi03G018360 vs. ExPASy TrEMBL
Match: A0A6J1G0C1 (NDR1/HIN1-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111449529 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 165/207 (79.71%), Postives = 184/207 (88.89%), Query Frame = 0


Query: 5   TYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKL 64
           TY RP HHHN   C  G GCF TFLK+LITII+V+GLAVLILWLIFRPNKVKF++TDAKL
Sbjct: 13  TYHRPGHHHN--RCGSGCGCFTTFLKVLITIIIVIGLAVLILWLIFRPNKVKFHVTDAKL 72

Query: 65  TQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTT 124
           TQFNLTD QL +NLALN+T RNPN RIGVYYDTIEAAAVYKDQRLQT+WLPPFYQG+KTT
Sbjct: 73  TQFNLTDNQLQFNLALNITARNPNNRIGVYYDTIEAAAVYKDQRLQTKWLPPFYQGHKTT 132

Query: 125 AVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC 184
           AV+S  F GQQLLLL+GQGL +FN+E +AGVY+++VELNLRIRLKFGA+RIGKFKPKVNC
Sbjct: 133 AVLSPEFSGQQLLLLSGQGLAQFNSEKLAGVYDIDVELNLRIRLKFGAIRIGKFKPKVNC 192

Query: 185 EFKVPLSSDGSSVGSVFQSTGCGIDYW 212
           E KV LSSDGSS  S+FQSTGC IDYW
Sbjct: 193 ELKVTLSSDGSSAPSLFQSTGCDIDYW 217

[Close]

BLAST of Lsi03G018360 vs. ExPASy TrEMBL
Match: A0A6J1KU22 (NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111498665 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 2.1e-88
Identity = 164/207 (79.23%), Postives = 184/207 (88.89%), Query Frame = 0


Query: 5   TYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKL 64
           TY RP HHHN   C  G G F TFLK+L+TII+V+GLAVLILWLIFRPNKVKF++TDAKL
Sbjct: 13  TYHRPGHHHNH--CGSGCGSFTTFLKVLVTIIIVIGLAVLILWLIFRPNKVKFHVTDAKL 72

Query: 65  TQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTT 124
           TQFNLTD QLH+NLALN+TVRNPN RIGVYYDTIEAAAVYKDQRLQT+WLPPFYQG+KTT
Sbjct: 73  TQFNLTDNQLHFNLALNITVRNPNSRIGVYYDTIEAAAVYKDQRLQTKWLPPFYQGHKTT 132

Query: 125 AVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC 184
           AV+S  F GQQLLLL+GQGL +F++E +AGVY+++VELNLRIRLK GAVRIGKFKPKVNC
Sbjct: 133 AVLSPEFSGQQLLLLSGQGLAQFSSEKLAGVYDIDVELNLRIRLKLGAVRIGKFKPKVNC 192

Query: 185 EFKVPLSSDGSSVGSVFQSTGCGIDYW 212
           E KV LSSDGSS  S+FQSTGC IDYW
Sbjct: 193 EVKVTLSSDGSSAPSLFQSTGCDIDYW 217

[Close]

BLAST of Lsi03G018360 vs. NCBI nr
Match: XP_038905332.1 (NDR1/HIN1-like protein 3 [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.0e-105
Identity = 191/211 (90.52%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MGKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLT 60
           MGKHTY RP+HHH+ RGCS GGGCFITFLKILITI+V+VGLAVLILWLIFRPNKVKF +T
Sbjct: 1   MGKHTYHRPDHHHSHRGCSCGGGCFITFLKILITIVVIVGLAVLILWLIFRPNKVKFQVT 60

Query: 61  DAKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQG 120
           DAKLTQFNLTD QLHYNLALNVTVRNPN+RIGVYYDTIE AAVYKDQRLQTQWLPPFYQG
Sbjct: 61  DAKLTQFNLTDNQLHYNLALNVTVRNPNRRIGVYYDTIEVAAVYKDQRLQTQWLPPFYQG 120

Query: 121 YKTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKP 180
           YKTTAVI+SVF GQQLLLLAGQGLTEFNAET+AGVYEMNV LNLRIRLKFGAVRIGKFKP
Sbjct: 121 YKTTAVITSVFSGQQLLLLAGQGLTEFNAETLAGVYEMNVWLNLRIRLKFGAVRIGKFKP 180

Query: 181 KVNCEFKVPLSSDGSSVGSVFQSTGCGIDYW 212
           KVNCEFKVPL+SDG SV SVFQSTGC IDYW
Sbjct: 181 KVNCEFKVPLTSDGGSVTSVFQSTGCDIDYW 211

[Close]

BLAST of Lsi03G018360 vs. NCBI nr
Match: XP_011652030.1 (NDR1/HIN1-like protein 3 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 2.2e-100
Identity = 187/211 (88.63%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 2   GKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTD 61
           GKHTY RPEHHHN   CS GGG FITFLKILI II+VVGLAVLILWLIFRPNKVKFN+TD
Sbjct: 3   GKHTYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTD 62

Query: 62  AKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGY 121
           AKLTQFNL   QLHYNLALNVTVRNPNKRIGVYYD+IE++ +YKDQRL+TQWLPPFYQGY
Sbjct: 63  AKLTQFNLIGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGY 122

Query: 122 KTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 181
           KTTAVIS VF GQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK
Sbjct: 123 KTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 182

Query: 182 VNCEFKVPLSSDGSS-VGSVFQSTGCGIDYW 212
           VNCEFKVPLSSDG+S VGSVF+STGC IDYW
Sbjct: 183 VNCEFKVPLSSDGNSVVGSVFESTGCDIDYW 213

[Close]

BLAST of Lsi03G018360 vs. NCBI nr
Match: XP_008442907.1 (PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo] >KAA0043823.1 NDR1/HIN1-Like protein 3-like [Cucumis melo var. makuwa] >TYK25309.1 NDR1/HIN1-Like protein 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 375.6 bits (963), Expect = 2.9e-100
Identity = 186/211 (88.15%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 2   GKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTD 61
           GKHTY RPEHHHN   CS GGG FITFLKILI II+VVGLAVLILWLIFRPNKVKFN+TD
Sbjct: 3   GKHTYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTD 62

Query: 62  AKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGY 121
           AKLTQFNL D QLH+N ALNVTVRNPNKRIGVYYDTIE++A+YK+QRLQTQWLPPFYQGY
Sbjct: 63  AKLTQFNLIDNQLHFNFALNVTVRNPNKRIGVYYDTIESSAIYKNQRLQTQWLPPFYQGY 122

Query: 122 KTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 181
           KTTAVIS VF GQQLLLLAGQGLTEFNAE VAGVYEMN+ELNLRIRLKFGAVR+GKFKPK
Sbjct: 123 KTTAVISCVFSGQQLLLLAGQGLTEFNAERVAGVYEMNMELNLRIRLKFGAVRVGKFKPK 182

Query: 182 VNCEFKVPLSSDGSS-VGSVFQSTGCGIDYW 212
           VNCEFKVPLSSDGSS VGSVF+STGC IDYW
Sbjct: 183 VNCEFKVPLSSDGSSVVGSVFESTGCDIDYW 213

[Close]

BLAST of Lsi03G018360 vs. NCBI nr
Match: KAE8651107.1 (hypothetical protein Csa_002063 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 4.2e-99
Identity = 186/210 (88.57%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 2   GKHTYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTD 61
           GKHTY RPEHHHN   CS GGG FITFLKILI II+VVGLAVLILWLIFRPNKVKFN+TD
Sbjct: 3   GKHTYHRPEHHHNHCRCSCGGGRFITFLKILIAIIIVVGLAVLILWLIFRPNKVKFNVTD 62

Query: 62  AKLTQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGY 121
           AKLTQFNL   QLHYNLALNVTVRNPNKRIGVYYD+IE++ +YKDQRL+TQWLPPFYQGY
Sbjct: 63  AKLTQFNLIGNQLHYNLALNVTVRNPNKRIGVYYDSIESSPIYKDQRLETQWLPPFYQGY 122

Query: 122 KTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 181
           KTTAVIS VF GQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK
Sbjct: 123 KTTAVISCVFSGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPK 182

Query: 182 VNCEFKVPLSSDGSS-VGSVFQSTGCGIDY 211
           VNCEFKVPLSSDG+S VGSVF+STGC IDY
Sbjct: 183 VNCEFKVPLSSDGNSVVGSVFESTGCDIDY 212

[Close]

BLAST of Lsi03G018360 vs. NCBI nr
Match: XP_023539525.1 (NDR1/HIN1-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.5 bits (885), Expect = 3.2e-91
Identity = 168/207 (81.16%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 5   TYLRPEHHHNDRGCSFGGGCFITFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKL 64
           TY RP HHH++R C  G GCF TFLK+LITII+V+GLAVLILWLIFRPNKVKF++TDAKL
Sbjct: 13  TYHRPGHHHHNR-CGSGCGCFTTFLKVLITIIIVIGLAVLILWLIFRPNKVKFHVTDAKL 72

Query: 65  TQFNLTDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTT 124
           TQFNLTD QLH+NLALN+T RNPNKRIGVYYDTIEAAAVYKDQRLQT+WLPPFYQG+KTT
Sbjct: 73  TQFNLTDNQLHFNLALNITARNPNKRIGVYYDTIEAAAVYKDQRLQTKWLPPFYQGHKTT 132

Query: 125 AVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC 184
           AV+S  F GQQLLLL+GQGL +FN+E +AGVY+++VELNLRIRLKFGAVRIGKFKPKVNC
Sbjct: 133 AVLSPEFSGQQLLLLSGQGLAQFNSEKLAGVYDIDVELNLRIRLKFGAVRIGKFKPKVNC 192

Query: 185 EFKVPLSSDGSSVGSVFQSTGCGIDYW 212
           E KV LSSDGSS  S+FQSTGC IDYW
Sbjct: 193 EVKVTLSSDGSSAPSLFQSTGCDIDYW 218

[Close]

BLAST of Lsi03G018360 vs. TAIR 10
Match: AT5G06320.1 (NDR1/HIN1-like 3 )

HSP 1 Score: 185.3 bits (469), Expect = 5.2e-47
Identity = 100/212 (47.17%), Postives = 137/212 (64.62%), Query Frame = 0


Query: 11  HHHNDRGCSFG---------GGCFITFL-KILITIIVVVGLAVLILWLIFRPNKVKFNLT 70
           H H  RG   G         G C ++ +  ILITI V++G+A LI+WLIFRPN +KF++T
Sbjct: 21  HSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVT 80

Query: 71  DAKLTQFNLTDT-QLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRL-QTQWLPPFY 130
           DAKLT+F L  T  L YNL LN T+RNPN+RIGVYYD IE    Y DQR   +  +  FY
Sbjct: 81  DAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFY 140

Query: 131 QGYKTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKF 190
           QG+K T V+ +   GQQL+LL G    + N +  + +Y ++ +L L+IR KFG ++  +F
Sbjct: 141 QGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRF 200

Query: 191 KPKVNCEFKVPLSSDGSSVGSVFQSTGCGIDY 211
           KPK+ C+ KVPL+S+ +S G VFQ T C +D+
Sbjct: 201 KPKIKCDLKVPLTSNSTS-GFVFQPTKCDVDF 231

[Close]

BLAST of Lsi03G018360 vs. TAIR 10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-43
Identity = 96/202 (47.52%), Postives = 135/202 (66.83%), Query Frame = 0


Query: 16  RGCSFGGGCFI--TFLKILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNLT--D 75
           RG   G GC +   F+K++I++IV++G+A LI WLI RP  +KF++TDA LT+F+ T  D
Sbjct: 27  RGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPD 86

Query: 76  TQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTTAVISSVF 135
             L YNLAL V VRNPNKRIG+YYD IEA A Y+ +R  T  L PFYQG+K T V++  F
Sbjct: 87  NILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTPFYQGHKNTTVLTPTF 146

Query: 136 FGQQLLLL-AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVP 195
            GQ L++  AGQ  T  NAE ++GVY + ++  LR+R K G ++  + KPKV+C + ++P
Sbjct: 147 QGQNLVIFNAGQSRT-LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLP 206

Query: 196 LS-SDGSSVGSVFQSTGCGIDY 211
           LS S+G++  S      C  D+
Sbjct: 207 LSTSNGTTTTSTVFPIKCDFDF 227

[Close]

BLAST of Lsi03G018360 vs. TAIR 10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-39
Identity = 79/191 (41.36%), Postives = 116/191 (60.73%), Query Frame = 0


Query: 22  GGCFITFL-KILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNL--TDTQLHYNL 81
           GGC +  +  ILI ++V +G+  LILW I RPN VKF +T+A LT+F        LHYN+
Sbjct: 47  GGCLVNIICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNI 106

Query: 82  ALNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTTAVISSVFFGQQLLL 141
           +LN ++RNPN+R+G++YD +E    Y DQR     +  FYQG+K T V+ +   GQ+L+L
Sbjct: 107 SLNFSIRNPNQRLGIHYDQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVL 166

Query: 142 LAGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNCEFKVPLSSDGSSVG 201
           L   G  +F  +  +GVY ++V+L  ++R KFG +     +PK+ C  KVPLS+  S   
Sbjct: 167 LGAGGRRDFREDRRSGVYRIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDER 226

Query: 202 SVFQSTGCGID 210
             F  T C +D
Sbjct: 227 FQFHPTKCHVD 237

[Close]

BLAST of Lsi03G018360 vs. TAIR 10
Match: AT3G11650.1 (NDR1/HIN1-like 2 )

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-39
Identity = 82/191 (42.93%), Postives = 117/191 (61.26%), Query Frame = 0


Query: 22  GGCFITFL-KILITIIVVVGLAVLILWLIFRPNKVKFNLTDAKLTQFNL-TDTQLHYNLA 81
           G C ++ +  ILI + V++G+A LILWLIFRPN VKF + DA L +F+   +  LHY+L 
Sbjct: 48  GCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLD 107

Query: 82  LNVTVRNPNKRIGVYYDTIEAAAVYKDQRLQTQWLPPFYQGYKTTAVISSVFFGQQLLLL 141
           LN T+RNPN+R+GVYYD    +  Y DQR  +  +  FYQG+K T VI +   GQ L++L
Sbjct: 108 LNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVL 167

Query: 142 AGQGLTEFNAETVAGVYEMNVELNLRIRLKFGAVRIGKFKPKVNC-EFKVPLSSDGSSVG 201
                T+   +  +G+Y +N +L L +R KF  ++  K KPK+ C + K+PL S  S+ G
Sbjct: 168 GDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGG 227

Query: 202 SVFQSTGCGID 210
             FQ   C  D
Sbjct: 228 FKFQPVQCDFD 238

[Close]

BLAST of Lsi03G018360 vs. TAIR 10
Match: AT1G32270.1 (syntaxin, putative )

HSP 1 Score: 108.6 bits (270), Expect = 6.2e-24
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 51  RPNKVKFNLTDAKLTQFNL-TDTQLHYNLALNVTVRNPNKRIGVYYDTIEAAAVYKDQRL 110
           R N VKF + DA+LT F+L ++  L Y+L+LN+++RN    IG++YD  EA   Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 111 QTQWLPPFYQGYKTTAVISSVFFGQQLLLLAGQGLTEFNAETVAGVYEMNVELNLRIRLK 170
               +P FY G K T ++ ++F GQ L+LL G    +F  +   GVY ++V+L++  R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 171 FGAVRIGKFKPKVNCEFKVPLSSDGSS 197
              +     KP V C  K+PL+   S+
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSN 149

The following BLAST results are available for this feature:

BLAST of Lsi03G018360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNH6	7.3e-46	47.17	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]
Q9SJ52	3.7e-42	47.52	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
Q9SRN1	9.5e-38	42.93	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
Q9C615	8.7e-23	38.10	Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1	[more]
Q9SJ54	1.2e-16	29.19	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]

BLAST of Lsi03G018360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE50	1.1e-100	88.63	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778990 PE=4 ...	[more]
A0A5A7TK31	1.4e-100	88.15	NDR1/HIN1-Like protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3B7J7	1.4e-100	88.15	NDR1/HIN1-Like protein 3-like OS=Cucumis melo OX=3656 GN=LOC103486670 PE=4 SV=1	[more]
A0A6J1G0C1	1.9e-89	79.71	NDR1/HIN1-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111449529 PE=4 SV=1	[more]
A0A6J1KU22	2.1e-88	79.23	NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111498665 PE=4 SV=1	[more]

BLAST of Lsi03G018360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905332.1	3.0e-105	90.52	NDR1/HIN1-like protein 3 [Benincasa hispida]	[more]
XP_011652030.1	2.2e-100	88.63	NDR1/HIN1-like protein 3 [Cucumis sativus]	[more]
XP_008442907.1	2.9e-100	88.15	PREDICTED: NDR1/HIN1-Like protein 3-like [Cucumis melo] >KAA0043823.1 NDR1/HIN1-...	[more]
KAE8651107.1	4.2e-99	88.57	hypothetical protein Csa_002063 [Cucumis sativus]	[more]
XP_023539525.1	3.2e-91	81.16	NDR1/HIN1-like protein 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G018360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06320.1	5.2e-47	47.17	NDR1/HIN1-like 3	[more]
AT2G35980.1	2.7e-43	47.52	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G35460.1	1.8e-39	41.36	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G11650.1	6.8e-39	42.93	NDR1/HIN1-like 2	[more]
AT1G32270.1	6.2e-24	38.10	syntaxin, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 81..184 e-value: 1.9E-12 score: 47.6
None	No IPR available	PANTHER	PTHR31415:SF105	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 12..207
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 12..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018360.1	Lsi03G018360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma