Lsi03G018100 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G018100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	chr03: 29539620 .. 29542457 (+)
RNA-Seq Expression	Lsi03G018100
Synteny	Lsi03G018100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGACGTGGTAAAACCATCAGTGGAATGGAAGTAATACAAAAGTAGAGAAAATTTTTCCGATCAAAGCAACCTTATCCACTTAGATTTTCTTCTTTCAATTTTTGAAGCTCCTCAATCCCCAAGGCTTCCTGGAGCAGAAATCCATCTCTGTCATTTGGGGATTCCACCATTTCCATTTTCTTCCTCAAATGTCAGCTTCTTCTGTCTCAATGGCTGCTGCTGCAGCAACTTCAGTTTCATCTTCTTCTCCACTCTGCAAGAAACTCTTCTTCACTCAACATCCCAACCAAATTCCTTCTCATTTTTCTCTAAAACAGAACCCATTGAAGCTTCTCAACCTCAGAATCCATTTACCCAACTTTTACCCTCTTTCCTTCTCCTCTGCTTCTCATCTCTACAGTGCTCCTCCTGCTTTTGATGGGCTCGAAGTCTCCGACTCTGAAACAGAATACGCAGAGATACAAGAATCAGATGGAGAAGAAGAAACCCATGAGGAAGACGAACAAAAGGTATCGGTGTCTCGCGAAGCAGGGAAGCTTTATATTGGGAATTTACCATATGCTATGACTTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCTGGTCATGTGGTTTCTGTACAGGTTTGTGATTGAAGTAGTTTTTTTGCTTTGAATATTCTGAATCGATTCTTTTAGGGCTAATCGGAACTGCTTAGCCATTGTTGGATTCTTATGTGATTATCTTCTGAATCTTCTGTTAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAGGAAGCTATTCGGATGTTTGATGGCTCTGTAATTACTTATATTCTTTCTCTTTTTCATTGTATTTTCTTTTAGCTTAACAATTGTGGAGATTTTTGCGTACTTTCTAACTAAGAAGTTGAAAACATTGGTTAGAAACTAGGGATGGATATCCACAGTTTGTTAACATACTAGTGGTTGTTACTGTCTTATGCATTGATAGAAGGGCAAGGTTTTGTGGGAGGCTTTATTTTATTTTATTCTATTTTACTATTTGTGGTGCATTTGGCTCGAGAGGAATAATAAATTATTTAGAGAGGTGGAGAAGTGGTGTGGTGAGGTTTTTGTAATCATGATATTGGTTTGATTTTGTTGGATTGGAGCCCTTTCTTATAGTTTATGCTTTGGATGTCCCTTTTGTTGGGATTTTTGCTCAATGAAAGCAACTTTAAAGCTGGATCTTGCTGAGAGAGAATTTGTCTCTATAAACATTCTGATATTGCATTGTCTCTATAGAACATTTAATAAAGGGACTAAATAAATCCTTCTTGATGAAACAAAACTTTGGAGAAGGTCAATTTACCTGTAGGCAAATTCTAATGTTGGGGTGCTTTTCCATTACTTGAACAATTGGCATATTATGGTGTCTCTACAAATGTTTTGTTATTGCATTGTTGGTGCCTTTTGTAGAATTAGATGATATTAGTGTTAGTGTTAGACATTAAAGGGTGGTGTTGATTCTAATACAATGGTCACAAATAGACTATAAATGCTCAGTGTAGTAGTTTTGATATTATGGTATGACATCTCTATATGATTGAGAAATTTATTGACAGTGTAAGATATTTAAGATTGCTAAAATGTTGCTAATGGTGGCACTACTTGTCAGCAAATCGGTGGCCGAACCGTTCGGGTGAACTTTCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAAATATATGCAGGGAACCTTGGTTGGGGTCTCACATCTCAGAGTCTTAGAGACGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCGTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGTAAGGAAGTGGAGTTACTTTCTAAAAGAATGAGAATCTAGAATTAATTATTTGAATAAAGTAGTTGGCAATATGATTCTAGAGATTAGACAACCTGAACACGTGACAGATTTACTGATGTGATTGATCCCCAACTACATTATTATTTTTTAACTACTTCTAAATGGGCCCATATTAACATAAACCTTGCAAACCAGAATTACATTATTTGAGAAATAGCCAAGAGAAAATGTACCTGATGTATATTCAGTCCTGTGTTATAGATACAAGTCACTCATTGACCTCTTCCTATGCTAACAGGAAGTTGAAGGGCGGCCGCTTCGTCTGAACATCGCTGCAGGGCAGGCCCCGACTTCTCCAGCAGCATTCACAAGGACTGAAAATGCTATCGACAGCAAAGAATTGCTTACAAGTATCAGTGCCTGAAATCTGTTGTTGATAGTTGAGTTGGCCCGAAAATTAAACTGAAACTGAAGACTAGCGGAAATTGTTCTGAAAATTGCATACCTTCAGGTCTTCCCTCGCAATTTTCTTTCATTCCTTGCTCAACTACCAAGGAAGCCTAGATTTTTTCATTGAGTAGTGTATGTGAGTTGTGGAAAGTGTGAAAGTGTTGCCATAGGTTACGAGTTTTTTTTAATGTATGACTTGAGAATTGGACTACATGTACTACGGAGTCTCTTTGCTGAGTTAAGTGCATATATTCATCTCTCGGCCTTTTATTCCTTATCTTTGCTAAATATGACTACGAGTCTACAACTACTGATTTGTTGTCTCTCTCTCTCCCCCCTCCCGAGAATTAACAATTTAAGTGTAATGTCTTATGAAAAAAGGAGACTGAAAAAC

mRNA sequence

CTGACGTGGTAAAACCATCAGTGGAATGGAAGTAATACAAAAGTAGAGAAAATTTTTCCGATCAAAGCAACCTTATCCACTTAGATTTTCTTCTTTCAATTTTTGAAGCTCCTCAATCCCCAAGGCTTCCTGGAGCAGAAATCCATCTCTGTCATTTGGGGATTCCACCATTTCCATTTTCTTCCTCAAATGTCAGCTTCTTCTGTCTCAATGGCTGCTGCTGCAGCAACTTCAGTTTCATCTTCTTCTCCACTCTGCAAGAAACTCTTCTTCACTCAACATCCCAACCAAATTCCTTCTCATTTTTCTCTAAAACAGAACCCATTGAAGCTTCTCAACCTCAGAATCCATTTACCCAACTTTTACCCTCTTTCCTTCTCCTCTGCTTCTCATCTCTACAGTGCTCCTCCTGCTTTTGATGGGCTCGAAGTCTCCGACTCTGAAACAGAATACGCAGAGATACAAGAATCAGATGGAGAAGAAGAAACCCATGAGGAAGACGAACAAAAGGTATCGGTGTCTCGCGAAGCAGGGAAGCTTTATATTGGGAATTTACCATATGCTATGACTTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCTGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAGGAAGCTATTCGGATGTTTGATGGCTCTCAAATCGGTGGCCGAACCGTTCGGGTGAACTTTCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAAATATATGCAGGGAACCTTGGTTGGGGTCTCACATCTCAGAGTCTTAGAGACGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCGTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGGCCGCTTCGTCTGAACATCGCTGCAGGGCAGGCCCCGACTTCTCCAGCAGCATTCACAAGGACTGAAAATGCTATCGACAGCAAAGAATTGCTTACAAGTATCAGTGCCTGAAATCTGTTGTTGATAGTTGAGTTGGCCCGAAAATTAAACTGAAACTGAAGACTAGCGGAAATTGTTCTGAAAATTGCATACCTTCAGGTCTTCCCTCGCAATTTTCTTTCATTCCTTGCTCAACTACCAAGGAAGCCTAGATTTTTTCATTGAGTAGTGTATGTGAGTTGTGGAAAGTGTGAAAGTGTTGCCATAGGTTACGAGTTTTTTTTAATGTATGACTTGAGAATTGGACTACATGTACTACGGAGTCTCTTTGCTGAGTTAAGTGCATATATTCATCTCTCGGCCTTTTATTCCTTATCTTTGCTAAATATGACTACGAGTCTACAACTACTGATTTGTTGTCTCTCTCTCTCCCCCCTCCCGAGAATTAACAATTTAAGTGTAATGTCTTATGAAAAAAGGAGACTGAAAAAC

Coding sequence (CDS)

ATGTCAGCTTCTTCTGTCTCAATGGCTGCTGCTGCAGCAACTTCAGTTTCATCTTCTTCTCCACTCTGCAAGAAACTCTTCTTCACTCAACATCCCAACCAAATTCCTTCTCATTTTTCTCTAAAACAGAACCCATTGAAGCTTCTCAACCTCAGAATCCATTTACCCAACTTTTACCCTCTTTCCTTCTCCTCTGCTTCTCATCTCTACAGTGCTCCTCCTGCTTTTGATGGGCTCGAAGTCTCCGACTCTGAAACAGAATACGCAGAGATACAAGAATCAGATGGAGAAGAAGAAACCCATGAGGAAGACGAACAAAAGGTATCGGTGTCTCGCGAAGCAGGGAAGCTTTATATTGGGAATTTACCATATGCTATGACTTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCTGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAGGAAGCTATTCGGATGTTTGATGGCTCTCAAATCGGTGGCCGAACCGTTCGGGTGAACTTTCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTCATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTTGTAGATAGTCCTCACAAAATATATGCAGGGAACCTTGGTTGGGGTCTCACATCTCAGAGTCTTAGAGACGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCGTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGGCCGCTTCGTCTGAACATCGCTGCAGGGCAGGCCCCGACTTCTCCAGCAGCATTCACAAGGACTGAAAATGCTATCGACAGCAAAGAATTGCTTACAAGTATCAGTGCCTGA

Protein sequence

MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPAAFTRTENAIDSKELLTSISA

Homology

[Close]

BLAST of Lsi03G018100 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 7.1e-85
Identity = 181/330 (54.85%), Postives = 232/330 (70.30%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIH---LPN 60
           MS    S AA A+TS +S   L     FTQ P     H SL        N +I+   L  
Sbjct: 1   MSGCCFSFAATASTSSTSLLYL-----FTQKPKFSVDHLSLSTYNTH-FNFKINSTKLKA 60

Query: 61  FYPLS--FSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAG 120
            +P+S  + S+  L +     DG+EV   + E      ++ EEE  E++E+  S S E G
Sbjct: 61  HFPISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           +LY+GNLP++MTSSQL+E+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+
Sbjct: 121 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 180

Query: 181 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSQ+GGRTV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  NL W LTSQ LR
Sbjct: 181 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 240

Query: 241 DAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA 300
           DAF +QPG +SAKVIYDR+SG+SRGFGF++F +AE   SAL++MN VE+EGRPLRLN+A 
Sbjct: 241 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAG 300

Query: 301 GQAPTS--PAAFTRTENAIDSKELLTSISA 324
            +AP S  P   T  EN  D+ ELL+S+S+
Sbjct: 301 QKAPVSSPPVVETSPENDSDNSELLSSLSS 324

[Close]

BLAST of Lsi03G018100 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.9e-78
Identity = 171/337 (50.74%), Postives = 229/337 (67.95%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQ------IPSHFSLK---QNPLKLLNL 60
           MS++  S A A + + ++SS        + H N        P  F L     NPL +L+ 
Sbjct: 1   MSSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPL-ILHS 60

Query: 61  RIHLPNFYPLSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVS 120
            I    F+  + + AS       A D ++ S  E E  E +  +GEEE  EE++Q    S
Sbjct: 61  NIRRHRFFCAAETEAS------SADDEIQASVEEEEEVEEEGDEGEEEV-EEEKQTTQAS 120

Query: 121 REAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180
            E G+LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKE
Sbjct: 121 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 180

Query: 181 AIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240
           A++MF+ SQIGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTS
Sbjct: 181 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 240

Query: 241 QSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRL 300
           Q L+DAF +QPG+L AKVIY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRL
Sbjct: 241 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 300

Query: 301 NIAAGQ-----APTSPAAFTRTENAIDSKELLTSISA 324
           N+A+ +     +P S       E +++S E+L+++SA
Sbjct: 301 NLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Lsi03G018100 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-38
Identity = 95/254 (37.40%), Postives = 152/254 (59.84%), Query Frame = 0


Query: 55  LPNFYPLSFSSASHLYSAPPAFDGLEVSDSETEYA-----EIQESDGEE-ETHEEDEQKV 114
           LP   P S +++   +S PP+   L +S S + ++     ++  SD ++ E  E+ +  V
Sbjct: 18  LPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGDDGV 77

Query: 115 SVSREAG---KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMAT 174
              R      K+++GNLP++  S+ L E+F  AG+V  V+VIYDK+T RSRGF FVTM++
Sbjct: 78  EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSS 137

Query: 175 LEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNL 234
            EE + A + F+G ++ GR +RVN    P   E        R   +   DS +++Y GNL
Sbjct: 138 KEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS--FDSSNRVYVGNL 197

Query: 235 GWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVE 294
            WG+   +L   F  Q  ++ AKV+YDR SG+SRGFGFV++ +AE+  +A+ES++GV++ 
Sbjct: 198 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLN 257

Query: 295 GRPLRLNIAAGQAP 300
           GR +R++ A  + P
Sbjct: 258 GRAIRVSPAEARPP 269

[Close]

BLAST of Lsi03G018100 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-37
Identity = 108/311 (34.73%), Postives = 171/311 (54.98%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYP 60
           M++SSVS  +     V+S +P   K      PN   S FSL  + L L            
Sbjct: 1   MASSSVS--SLQFLFVTSQTPSSLK------PNSTLSFFSLPSSSLNL-----------S 60

Query: 61  LSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIG 120
           LS SS  H  S  P         + +++ ++     E++    ++ + S   E  KL++G
Sbjct: 61  LSSSSIGHSASIKPFESSFSTRVALSDFDQL-----EDDVEVAEQPRFS---EDLKLFVG 120

Query: 121 NLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLP+++ S+ L  +F  AG+V  V+VIYDK++ RSRGF FVTM+T EE + A + F+G +
Sbjct: 121 NLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYE 180

Query: 181 IGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPHKIYAG 240
           I GR +RVN    P           RGG     G +  +S        + VDS +++Y G
Sbjct: 181 IDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 240

Query: 241 NLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVE 295
           NL WG+   +L++ F  Q  ++ AKV+YDR SG+SRGFGFV++ +A++   A++S+NG++
Sbjct: 241 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGID 284

[Close]

BLAST of Lsi03G018100 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.3e-37
Identity = 108/311 (34.73%), Postives = 164/311 (52.73%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYP 60
           M++SSVS       +  + S L         PN   S FSL   P   LNL +   +   
Sbjct: 1   MASSSVSSLQFLFVTPQTPSSL--------KPNSTLSFFSL---PSSSLNLSLSSSSTGL 60

Query: 61  LSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIG 120
            S       +S   A  G +  + + E A       E+    ED           KL++G
Sbjct: 61  CSIKPFESSFSTRVALSGFDQLEDDVEVA-------EQPRFSEDL----------KLFVG 120

Query: 121 NLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLP+++ S+ L  +F  AG+V  V+VIYDK+T RSRGF FVTM+T EE + A + F+G +
Sbjct: 121 NLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYE 180

Query: 181 IGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPHKIYAG 240
           I GR +RVN    P           RGG     G +  +S        + VDS +++Y G
Sbjct: 181 IDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVG 240

Query: 241 NLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVE 295
           NL WG+   +L++ F  Q  ++ AKV+YDR SG+SRGFGFV++ ++++   A++S+NGV+
Sbjct: 241 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVD 283

[Close]

BLAST of Lsi03G018100 vs. ExPASy TrEMBL
Match: A0A0A0LBL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782700 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.2e-153
Identity = 291/323 (90.09%), Postives = 299/323 (92.57%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYP 60
           MSA S+SMAAAAA +  SSSPL  K FFTQHPNQIPSHFS K N LKLLNL  H PNFYP
Sbjct: 1   MSAYSLSMAAAAAAAAVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIG 120
           LSFSS SHL+ APPAFD LE+SD ETEY  IQESDGEEET EEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQL+EVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPT 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ+P 
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFTRTENAIDSKELLTSISA 324
           SPAAF RTEN ID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

[Close]

BLAST of Lsi03G018100 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 4.9e-153
Identity = 288/320 (90.00%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 4   SSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSF 63
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFS K N LKLLNL IHLPNFYPLSF
Sbjct: 2   SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 61

Query: 64  SSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLP 123
           SS SH++ APPAFD LE+SD ETEY ++QESDGEE+T EEDEQK+SVSREAGKLYIGNLP
Sbjct: 62  SSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 121

Query: 124 YAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183
           YAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 122 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 181

Query: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 243
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG
Sbjct: 182 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 241

Query: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPA 303
           ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +APTSPA
Sbjct: 242 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 301

Query: 304 AFTRTENAIDSKELLTSISA 324
           AF RTEN IDSKELLTSISA
Sbjct: 302 AFPRTENTIDSKELLTSISA 321

[Close]

BLAST of Lsi03G018100 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 6.4e-153
Identity = 288/320 (90.00%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 4   SSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSF 63
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFS K N LKLLNL IHLPNFYPLSF
Sbjct: 2   SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 61

Query: 64  SSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLP 123
           SS SH++ APPAFD LE+SD ETEY ++QESDGEE+T EEDEQK+SVSREAGKLYIGNLP
Sbjct: 62  SSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 121

Query: 124 YAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183
           YAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 122 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 181

Query: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 243
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG
Sbjct: 182 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 241

Query: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPA 303
           ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +APTSPA
Sbjct: 242 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 301

Query: 304 AFTRTENAIDSKELLTSISA 324
           AF RTEN IDSKELLTSISA
Sbjct: 302 AFPRTENTIDSKELLTSISA 321

[Close]

BLAST of Lsi03G018100 vs. ExPASy TrEMBL
Match: A0A5A7TK11 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001350 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 6.4e-153
Identity = 288/320 (90.00%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 4   SSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSF 63
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFS K N LKLLNL IHLPNFYPLSF
Sbjct: 49  SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 108

Query: 64  SSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLP 123
           SS SH++ APPAFD LE+SD ETEY ++QESDGEE+T EEDEQK+SVSREAGKLYIGNLP
Sbjct: 109 SSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 168

Query: 124 YAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183
           YAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 169 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 228

Query: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 243
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG
Sbjct: 229 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 288

Query: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPA 303
           ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +APTSPA
Sbjct: 289 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 348

Query: 304 AFTRTENAIDSKELLTSISA 324
           AF RTEN IDSKELLTSISA
Sbjct: 349 AFPRTENTIDSKELLTSISA 368

[Close]

BLAST of Lsi03G018100 vs. ExPASy TrEMBL
Match: A0A6J1F948 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441950 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.5e-149
Identity = 287/327 (87.77%), Postives = 301/327 (92.05%), Query Frame = 0


Query: 1   MSASSVSMAAAAA----TSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLP 60
           MSASS++MAAAAA    +S SSSS  CKKLFF QH N+IPSHFS KQ PLKLL LRIHLP
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHLP 60

Query: 61  NFYPLSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGK 120
           N YPL+FSSASHLY APPAF+GLEVSD  TE AE +ESDG EE+ EEDEQKVS SR+AGK
Sbjct: 61  NIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAGK 120

Query: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180
           LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF
Sbjct: 121 LYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMF 180

Query: 181 DGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRD 240
           DGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+
Sbjct: 181 DGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRE 240

Query: 241 AFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAG 300
           AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA 
Sbjct: 241 AFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAAD 300

Query: 301 QAPTSPAAFTRTENAIDSKELLTSISA 324
           +APTSPAAFTRTEN IDS ELLTSISA
Sbjct: 301 RAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]

BLAST of Lsi03G018100 vs. NCBI nr
Match: XP_038904039.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 579.3 bits (1492), Expect = 2.0e-161
Identity = 307/323 (95.05%), Postives = 311/323 (96.28%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYP 60
           MSASSVSMAAAAA SVSSSSPL KKLFFTQHPNQIPSHFS KQNPLKLLNL IHLPNFYP
Sbjct: 1   MSASSVSMAAAAAPSVSSSSPLSKKLFFTQHPNQIPSHFSPKQNPLKLLNLTIHLPNFYP 60

Query: 61  LSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIG 120
           LSFSS SHL+S PPAFDGLEVSD ETEYAEIQESD EEET EEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSPSHLHSVPPAFDGLEVSDPETEYAEIQESDAEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQL+EVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEN 240

Query: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPT 300
           QPGILSAKVIYDRASGKSRGFGFVSFETAEDAE ALESMNGVEVEGRPLRLNIAAG+APT
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAEFALESMNGVEVEGRPLRLNIAAGRAPT 300

Query: 301 SPAAFTRTENAIDSKELLTSISA 324
           SPAAF RTEN IDSKELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 323

[Close]

BLAST of Lsi03G018100 vs. NCBI nr
Match: XP_004136521.3 (33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8651116.1 hypothetical protein Csa_001333 [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 7.7e-153
Identity = 291/323 (90.09%), Postives = 299/323 (92.57%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYP 60
           MSA S+SMAAAAA +  SSSPL  K FFTQHPNQIPSHFS K N LKLLNL  H PNFYP
Sbjct: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIG 120
           LSFSS SHL+ APPAFD LE+SD ETEY  IQESDGEEET EEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQL+EVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPT 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ+P 
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFTRTENAIDSKELLTSISA 324
           SPAAF RTEN ID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

[Close]

BLAST of Lsi03G018100 vs. NCBI nr
Match: XP_008442930.1 (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 550.4 bits (1417), Expect = 1.0e-152
Identity = 288/320 (90.00%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 4   SSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSF 63
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFS K N LKLLNL IHLPNFYPLSF
Sbjct: 2   SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 61

Query: 64  SSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLP 123
           SS SH++ APPAFD LE+SD ETEY ++QESDGEE+T EEDEQK+SVSREAGKLYIGNLP
Sbjct: 62  SSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 121

Query: 124 YAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183
           YAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 122 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 181

Query: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 243
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG
Sbjct: 182 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 241

Query: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPA 303
           ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +APTSPA
Sbjct: 242 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 301

Query: 304 AFTRTENAIDSKELLTSISA 324
           AF RTEN IDSKELLTSISA
Sbjct: 302 AFPRTENTIDSKELLTSISA 321

[Close]

BLAST of Lsi03G018100 vs. NCBI nr
Match: TYK25330.1 (33 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 550.1 bits (1416), Expect = 1.3e-152
Identity = 288/320 (90.00%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 4   SSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSF 63
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFS K N LKLLNL IHLPNFYPLSF
Sbjct: 2   SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 61

Query: 64  SSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLP 123
           SS SH++ APPAFD LE+SD ETEY ++QESDGEE+T EEDEQK+SVSREAGKLYIGNLP
Sbjct: 62  SSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 121

Query: 124 YAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183
           YAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 122 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 181

Query: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 243
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG
Sbjct: 182 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 241

Query: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPA 303
           ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +APTSPA
Sbjct: 242 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 301

Query: 304 AFTRTENAIDSKELLTSISA 324
           AF RTEN IDSKELLTSISA
Sbjct: 302 AFPRTENTIDSKELLTSISA 321

[Close]

BLAST of Lsi03G018100 vs. NCBI nr
Match: KAA0043803.1 (33 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 550.1 bits (1416), Expect = 1.3e-152
Identity = 288/320 (90.00%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 4   SSVSMAAAAATSVSSSSPLCKKLFFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSF 63
           S+ S+AAAAA + +SSSPL KK FFTQHPNQIPSHFS K N LKLLNL IHLPNFYPLSF
Sbjct: 49  SAYSLAAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYPLSF 108

Query: 64  SSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLP 123
           SS SH++ APPAFD LE+SD ETEY ++QESDGEE+T EEDEQK+SVSREAGKLYIGNLP
Sbjct: 109 SSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIGNLP 168

Query: 124 YAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 183
           YAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG
Sbjct: 169 YAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGG 228

Query: 184 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 243
           RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG
Sbjct: 229 RTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPG 288

Query: 244 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQAPTSPA 303
           ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA +APTSPA
Sbjct: 289 ILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPTSPA 348

Query: 304 AFTRTENAIDSKELLTSISA 324
           AF RTEN IDSKELLTSISA
Sbjct: 349 AFPRTENTIDSKELLTSISA 368

[Close]

BLAST of Lsi03G018100 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 293.5 bits (750), Expect = 2.1e-79
Identity = 171/337 (50.74%), Postives = 229/337 (67.95%), Query Frame = 0


Query: 1   MSASSVSMAAAAATSVSSSSPLCKKLFFTQHPNQ------IPSHFSLK---QNPLKLLNL 60
           MS++  S A A + + ++SS        + H N        P  F L     NPL +L+ 
Sbjct: 1   MSSAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPL-ILHS 60

Query: 61  RIHLPNFYPLSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVS 120
            I    F+  + + AS       A D ++ S  E E  E +  +GEEE  EE++Q    S
Sbjct: 61  NIRRHRFFCAAETEAS------SADDEIQASVEEEEEVEEEGDEGEEEV-EEEKQTTQAS 120

Query: 121 REAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKE 180
            E G+LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKE
Sbjct: 121 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 180

Query: 181 AIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTS 240
           A++MF+ SQIGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTS
Sbjct: 181 AMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTS 240

Query: 241 QSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRL 300
           Q L+DAF +QPG+L AKVIY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRL
Sbjct: 241 QGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRL 300

Query: 301 NIAAGQ-----APTSPAAFTRTENAIDSKELLTSISA 324
           N+A+ +     +P S       E +++S E+L+++SA
Sbjct: 301 NLASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Lsi03G018100 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 153.3 bits (386), Expect = 3.3e-37
Identity = 92/251 (36.65%), Postives = 147/251 (58.57%), Query Frame = 0


Query: 61  LSFSSASHLYSAPPAFDGLEVSDSETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIG 120
           +SFS A+   S    F       SE E     E DG  +     EQ  S      KL++G
Sbjct: 44  VSFSIAAKWNSPASRFARNVAITSEFEV----EEDGFADVAPPKEQSFSADL---KLFVG 103

Query: 121 NLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLP+ + S+QL ++F  AG+V  V+VIYDK+T RSRGF FVTM+++ E + A + F+G +
Sbjct: 104 NLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYE 163

Query: 181 IGGRTVRVNF-PEVPRGGEKEVMGPKIRSSYNKF-----------VDSPHKIYAGNLGWG 240
           + GR +RVN  P  P+  +    GP  RSS+                S +++Y GNL WG
Sbjct: 164 LDGRPLRVNAGPPPPKREDGFSRGP--RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWG 223

Query: 241 LTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRP 300
           +   +L   F  Q  ++ A+VIYDR SG+S+GFGFV+++++++ ++A++S++G +++GR 
Sbjct: 224 VDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQ 283

[Close]

BLAST of Lsi03G018100 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-33
Identity = 74/214 (34.58%), Postives = 132/214 (61.68%), Query Frame = 0


Query: 84  SETEYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLPYAMTSSQLTEVFAEAGHVVS 143
           SET   +++E + ++      +   +V+    KLY GNLPY + S+ L ++  +  +   
Sbjct: 57  SETITVKLEEEEKDDGASAVLDPPAAVNT---KLYFGNLPYNVDSATLAQIIQDFANPEL 116

Query: 144 VQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMG 203
           V+V+Y++ T +SRGFAFVTM+ +E+    I   DG++  GR ++VNF + P+  ++ +  
Sbjct: 117 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL-- 176

Query: 204 PKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGF 263
                    + ++ HK++ GNL W +TS+SL  AF     ++ A+V++D  +G+SRG+GF
Sbjct: 177 ---------YPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGF 236

Query: 264 VSFETAEDAESALESMNGVEVEGRPLRLNIAAGQ 298
           V + +  + E+ALES++G E+EGR +R+N+A G+
Sbjct: 237 VCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256

[Close]

BLAST of Lsi03G018100 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 135.6 bits (340), Expect = 7.2e-32
Identity = 89/268 (33.21%), Postives = 143/268 (53.36%), Query Frame = 0


Query: 27  FFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSFSSASHLYSAPPAFDGLEVSDSET 86
           F T   +  P+ FS +      L+ R+++       FSS        P+  G     S T
Sbjct: 4   FLTNVVSIKPTIFSFQSESFTPLHTRVNV-------FSSKPF-----PSLAGTFSRSSRT 63

Query: 87  EYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQV 146
            +     ++ EE+    D      S  A ++YIGN+P  +T+ QLT++  E G V  VQV
Sbjct: 64  RFIPYAVTETEEKPAALDPS----SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQV 123

Query: 147 IYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKI 206
           +YDK + RSR F F TM ++E+A   +   +G+ + GR ++VN  E P     ++    +
Sbjct: 124 MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVL 183

Query: 207 RSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSF 266
           +S  + FVDSP+K+Y GNL   +T + L + F  +  ++SAKV     + KS GFGFV+F
Sbjct: 184 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 243

Query: 267 ETAEDAESALESMNGVEVEGRPLRLNIA 295
            + ED E+A+ ++N   +EG+ +R+N A
Sbjct: 244 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Lsi03G018100 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 135.6 bits (340), Expect = 7.2e-32
Identity = 89/268 (33.21%), Postives = 143/268 (53.36%), Query Frame = 0


Query: 27  FFTQHPNQIPSHFSLKQNPLKLLNLRIHLPNFYPLSFSSASHLYSAPPAFDGLEVSDSET 86
           F T   +  P+ FS +      L+ R+++       FSS        P+  G     S T
Sbjct: 4   FLTNVVSIKPTIFSFQSESFTPLHTRVNV-------FSSKPF-----PSLAGTFSRSSRT 63

Query: 87  EYAEIQESDGEEETHEEDEQKVSVSREAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQV 146
            +     ++ EE+    D      S  A ++YIGN+P  +T+ QLT++  E G V  VQV
Sbjct: 64  RFIPYAVTETEEKPAALDPS----SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQV 123

Query: 147 IYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKI 206
           +YDK + RSR F F TM ++E+A   +   +G+ + GR ++VN  E P     ++    +
Sbjct: 124 MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVL 183

Query: 207 RSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKVIYDRASGKSRGFGFVSF 266
           +S  + FVDSP+K+Y GNL   +T + L + F  +  ++SAKV     + KS GFGFV+F
Sbjct: 184 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 243

Query: 267 ETAEDAESALESMNGVEVEGRPLRLNIA 295
            + ED E+A+ ++N   +EG+ +R+N A
Sbjct: 244 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253

The following BLAST results are available for this feature:

BLAST of Lsi03G018100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	7.1e-85	54.85	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	2.9e-78	50.74	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08935	1.7e-38	37.40	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49314	1.9e-37	34.73	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q08937	7.3e-37	34.73	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of Lsi03G018100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBL6	2.2e-153	90.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782700 PE=4 SV=1	[more]
A0A1S3B7N1	4.9e-153	90.00	33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ...	[more]
A0A5D3DPZ1	6.4e-153	90.00	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TK11	6.4e-153	90.00	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1F948	9.5e-149	87.77	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Lsi03G018100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904039.1	2.0e-161	95.05	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_004136521.3	7.7e-153	90.09	33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8651116.1 hypothet...	[more]
XP_008442930.1	1.0e-152	90.00	PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
TYK25330.1	1.3e-152	90.00	33 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
KAA0043803.1	1.3e-152	90.00	33 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]

BLAST of Lsi03G018100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52380.1	2.1e-79	50.74	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	3.3e-37	36.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	3.8e-33	34.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.1	7.2e-32	33.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	7.2e-32	33.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 116..189 e-value: 5.5E-28 score: 109.0 coord: 219..292 e-value: 6.8E-26 score: 102.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 220..290 e-value: 3.5E-19 score: 68.4 coord: 117..187 e-value: 2.6E-20 score: 72.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 218..296 score: 18.921999
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 115..193 score: 19.416605
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 200..305 e-value: 8.2E-25 score: 89.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..199 e-value: 8.0E-30 score: 105.9
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..306
None	No IPR available	PANTHER	PTHR48025:SF11	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	coord: 1..306
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 116..192 e-value: 6.11089E-34 score: 117.714
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 213..301
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 112..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018100.1	Lsi03G018100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding