Lsi03G018060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G018060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type domain-containing protein
Location	chr03: 29493392 .. 29493889 (-)
RNA-Seq Expression	Lsi03G018060
Synteny	Lsi03G018060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCTCCACGGACTCCGACGGAGGCGACGGTGGCGGCGTCGGCAGTTTCCCCTACGTCGTTGGAATTTCAGTTGGAATCCTCTTCCTCCTCACAACCCTTACAATTGCGACCTATTTCTGCACCAGAACCACCGTTCCGCAGCCGAATCGTCGTTTCCGACCGGCGGAACGGCGGGATTTCGTCGTCGATTTTGGATTGGGACTTGAAGATGAGGTCATTAATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGAGGGAAAATTGGAATCCACCGCCGCGAGCGGTTGTTCGATTTGTTTAGGGGATTATAAAAAGGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCGGTGCCGACGCCGATTTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

mRNA sequence

ATGAACACCTCCACGGACTCCGACGGAGGCGACGGTGGCGGCGTCGGCAGTTTCCCCTACGTCGTTGGAATTTCAGTTGGAATCCTCTTCCTCCTCACAACCCTTACAATTGCGACCTATTTCTGCACCAGAACCACCGTTCCGCAGCCGAATCGTCGTTTCCGACCGGCGGAACGGCGGGATTTCGTCGTCGATTTTGGATTGGGACTTGAAGATGAGGTCATTAATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGAGGGAAAATTGGAATCCACCGCCGCGAGCGGTTGTTCGATTTGTTTAGGGGATTATAAAAAGGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCGGTGCCGACGCCGATTTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

Coding sequence (CDS)

ATGAACACCTCCACGGACTCCGACGGAGGCGACGGTGGCGGCGTCGGCAGTTTCCCCTACGTCGTTGGAATTTCAGTTGGAATCCTCTTCCTCCTCACAACCCTTACAATTGCGACCTATTTCTGCACCAGAACCACCGTTCCGCAGCCGAATCGTCGTTTCCGACCGGCGGAACGGCGGGATTTCGTCGTCGATTTTGGATTGGGACTTGAAGATGAGGTCATTAATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGAGGGAAAATTGGAATCCACCGCCGCGAGCGGTTGTTCGATTTGTTTAGGGGATTATAAAAAGGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCGGTGCCGACGCCGATTTCCACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA

Protein sequence

MNTSTDSDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS

Homology

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BLAST of Lsi03G018060 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 83/153 (54.25%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 15  VGSFPYVVGISVGILFLLTTLTIATYFCTRTTV-PQPNRRFRPAER-----RDFVVDFGL 74
           +G F Y +G+S+G+L L+TT+T+ +Y+CTR  +   P++  + + R        ++D   
Sbjct: 61  IGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVP 120

Query: 75  GLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCGHLFHSGCI 134
           GL+++ I  YPKILYSEAK       T AS C+ICLGDYK   +LR LPDC HLFH  CI
Sbjct: 121 GLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 180

Query: 135 DPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 162
           D WLRLNP+CPVCRTSP+PTP+STPLAEVVPLA
Sbjct: 181 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

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BLAST of Lsi03G018060 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-41
Identity = 86/171 (50.29%), Postives = 114/171 (66.67%), Query Frame = 0


Query: 15  VGSFPYVVGISVGILFLLTTLTIATYFCTR-------TTVPQPNRRFRPA--------ER 74
           +G   Y +G+S+GIL L+TT+T+ +Y+CTR       TT P+  RR R +        ER
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 75  RDF-------VVDFGLGLEDEVINGYPKILYSEAKLEGKL--ESTAASGCSICLGDYKKD 134
            DF       VV   LGL +EVI G+PK+ Y EA++   L  ES+  S CSICL DYKK 
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 135 DVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 162
           D++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

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BLAST of Lsi03G018060 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-26
Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 18  FPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVV------------- 77
           F Y + I++G L LL+T+ +++Y C R +  +        +R   V+             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 78  -----DFGLGLEDEVINGYPKILYSEAKLEGKLESTAASG---CSICLGDYKKDDVLRLL 137
                D  +GL+  VIN YPK  +S+       +     G   CSICL +YK+ ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 138 PDCGHLFHSGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 162
           P+C H FH  C+D WL+LN SCPVCR SP+P    TP+STPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

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BLAST of Lsi03G018060 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-22
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 7   SDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDF 66
           S    G G+G   Y + I+V IL L++ + +A+Y C R+         R     D V+D 
Sbjct: 5   SPPASGVGLG---YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDL 64

Query: 67  -------GLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 126
                   LGL+  VI  YP+I+  +++   +L       CSICL DY+  + +R +P+C
Sbjct: 65  PSPAAEVKLGLDRPVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPEC 124

Query: 127 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 162
            H FH+ C+D WLR + +CP+CR SP P+ ++TPL+++VPLA
Sbjct: 125 NHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

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BLAST of Lsi03G018060 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.8e-22
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 0


Query: 20  YVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDFGL----------- 79
           Y + I++G L L++T+ +++Y C R +  + +     A       D G+           
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 80  -----------GLEDEVINGYPK---------ILYSEAKLEGKLESTAASGCSICLGDYK 139
                      GL+  VIN YPK         ++  +   +G+   T    CSICL +Y 
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETT---CSICLCEYM 147

Query: 140 KDDVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 162
           ++++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

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BLAST of Lsi03G018060 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.6e-75
Identity = 140/166 (84.34%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MNTSTDSDGGDG-GGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN ST S G D  G VG+FPY+VGISVG+LFLLTT+TIATY CTRTTVPQPNRR RP ER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
           RD +VDFG GLEDE IN YPKILYSE KLEGKLES AASGCSICLGDYK +DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           GH+FHSGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Lsi03G018060 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.8e-74
Identity = 138/166 (83.13%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MNTSTDSDGGD-GGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN ST S G D  G VG+FPY+VGISVG+LFLLTT+TIATY CTRTTVPQ NRR RP ER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
           RD +VDFG GLEDE IN YPKILYSE KLEGK+ES AASGCSICLGDYK +DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           GH+FHSGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Lsi03G018060 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.4e-73
Identity = 138/165 (83.64%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MNTSTDSDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERR 60
           MN+ +DS GGD   +GSFP++VGISVGILFLLTTLTI TY CTRTTVPQPNRR +   RR
Sbjct: 1   MNSPSDSGGGD---IGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRR 60

Query: 61  DFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCG 120
           DFVVDF  GLEDEVINGYPKILYSEAKLE KLES AA+GCSICL DYK DDVLRLLPDCG
Sbjct: 61  DFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCG 120

Query: 121 HLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           HLFH  CIDPWLRLNPSCPVCRTSP+PTPISTPLAEVVPLAIGRS
Sbjct: 121 HLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of Lsi03G018060 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.7e-72
Identity = 136/165 (82.42%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MNTSTDSDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERR 60
           MN+S DS GGD   +G FPY++GISVGILFLLTTLTI TY CTRTTVP PNRR     RR
Sbjct: 1   MNSSPDSGGGD---IGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRR 60

Query: 61  DFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCG 120
           DFVVDF  GLEDEVINGYPKILYSEAKLE KLES A +GCSICL DYK DDVLRLLPDCG
Sbjct: 61  DFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCG 120

Query: 121 HLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           HLFH GCIDPWLRLNPSCPVCRTSPVPTPISTPLAEV+PLA+GRS
Sbjct: 121 HLFHCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRS 162

[Close]

BLAST of Lsi03G018060 vs. ExPASy TrEMBL
Match: A0A7N0V3V8 (RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 97/165 (58.79%), Postives = 121/165 (73.33%), Query Frame = 0


Query: 1   MNTSTDSDGGDGG-GVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN +TDS    G   VG F Y +GIS+GIL L+TT+TIA+YFC RT    P     P   
Sbjct: 1   MNNTTDSGTFFGSYAVGGFSYGIGISIGILLLITTITIASYFCARTATGSPQGARSPPSA 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
            + V+D  +G+++E I  YPK+LYSEA+ +GK  +T A+ CSICL DYK  D LR+LPDC
Sbjct: 61  HEIVLD--VGIDEETIETYPKLLYSEARRQGKASTTTATCCSICLADYKGPDALRMLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGR 165
           GHLFH GC+DPWLRL+P+CPVCRTSP+P+P+STPLAEVVPLA  R
Sbjct: 121 GHLFHVGCVDPWLRLHPTCPVCRTSPLPSPLSTPLAEVVPLASRR 163

[Close]

BLAST of Lsi03G018060 vs. NCBI nr
Match: XP_022935317.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 290.4 bits (742), Expect = 9.6e-75
Identity = 140/166 (84.34%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MNTSTDSDGGDG-GGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN ST S G D  G VG+FPY+VGISVG+LFLLTT+TIATY CTRTTVPQPNRR RP ER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
           RD +VDFG GLEDE IN YPKILYSE KLEGKLES AASGCSICLGDYK +DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           GH+FHSGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Lsi03G018060 vs. NCBI nr
Match: XP_023528902.1 (RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 139/166 (83.73%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MNTSTDSDGGD-GGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN ST S G D  G VG+FPY+VGISVG+LFLLTT+TIATY CTRTTVPQPNRR RP ER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
           RD +VDFG GLEDE IN YPKILYSE KLEGK+ES AASGCSICLGDYK +DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           GH+FHSGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Lsi03G018060 vs. NCBI nr
Match: KAG6580759.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017512.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 139/165 (84.24%), Postives = 147/165 (89.09%), Query Frame = 0


Query: 1   MNTSTDSDGGDG-GGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN ST S G D  G VG+FPY+VGISVG+LFLLTT+TIATY CTRTTVPQPNRR RP ER
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
           RD +VDFG GLEDE IN YPKILYSE KLEGKLES AASGCSICLGDYK +DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGR 165
           GH+FHSGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of Lsi03G018060 vs. NCBI nr
Match: XP_022983126.1 (RING-H2 finger protein ATL70-like [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 1.8e-73
Identity = 138/166 (83.13%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MNTSTDSDGGD-GGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAER 60
           MN ST S G D  G VG+FPY+VGISVG+LFLLTT+TIATY CTRTTVPQ NRR RP ER
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 120
           RD +VDFG GLEDE IN YPKILYSE KLEGK+ES AASGCSICLGDYK +DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           GH+FHSGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVVPLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of Lsi03G018060 vs. NCBI nr
Match: KAA0043799.1 (RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 138/165 (83.64%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MNTSTDSDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERR 60
           MN+ +DS GGD   +GSFP++VGISVGILFLLTTLTI TY CTRTTVPQPNRR +   RR
Sbjct: 1   MNSPSDSGGGD---IGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRR 60

Query: 61  DFVVDFGLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCG 120
           DFVVDF  GLEDEVINGYPKILYSEAKLE KLES AA+GCSICL DYK DDVLRLLPDCG
Sbjct: 61  DFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCG 120

Query: 121 HLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLAIGRS 166
           HLFH  CIDPWLRLNPSCPVCRTSP+PTPISTPLAEVVPLAIGRS
Sbjct: 121 HLFHGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of Lsi03G018060 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 7.9e-43
Identity = 83/153 (54.25%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 15  VGSFPYVVGISVGILFLLTTLTIATYFCTRTTV-PQPNRRFRPAER-----RDFVVDFGL 74
           +G F Y +G+S+G+L L+TT+T+ +Y+CTR  +   P++  + + R        ++D   
Sbjct: 61  IGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVIIDVVP 120

Query: 75  GLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDCGHLFHSGCI 134
           GL+++ I  YPKILYSEAK       T AS C+ICLGDYK   +LR LPDC HLFH  CI
Sbjct: 121 GLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCI 180

Query: 135 DPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 162
           D WLRLNP+CPVCRTSP+PTP+STPLAEVVPLA
Sbjct: 181 DTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of Lsi03G018060 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-42
Identity = 86/171 (50.29%), Postives = 114/171 (66.67%), Query Frame = 0


Query: 15  VGSFPYVVGISVGILFLLTTLTIATYFCTR-------TTVPQPNRRFRPA--------ER 74
           +G   Y +G+S+GIL L+TT+T+ +Y+CTR       TT P+  RR R +        ER
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 75  RDF-------VVDFGLGLEDEVINGYPKILYSEAKLEGKL--ESTAASGCSICLGDYKKD 134
            DF       VV   LGL +EVI G+PK+ Y EA++   L  ES+  S CSICL DYKK 
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 135 DVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 162
           D++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+VVP +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of Lsi03G018060 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-27
Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 18  FPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVV------------- 77
           F Y + I++G L LL+T+ +++Y C R +  +        +R   V+             
Sbjct: 35  FGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDNE 94

Query: 78  -----DFGLGLEDEVINGYPKILYSEAKLEGKLESTAASG---CSICLGDYKKDDVLRLL 137
                D  +GL+  VIN YPK  +S+       +     G   CSICL +YK+ ++LR++
Sbjct: 95  DLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMM 154

Query: 138 PDCGHLFHSGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 162
           P+C H FH  C+D WL+LN SCPVCR SP+P    TP+STPL+EVVPL+
Sbjct: 155 PECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of Lsi03G018060 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 59/162 (36.42%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 7   SDGGDGGGVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDF 66
           S    G G+G   Y + I+V IL L++ + +A+Y C R+         R     D V+D 
Sbjct: 5   SPPASGVGLG---YGIAIAVSILVLISFIMLASYICIRS-----KSTGRDEATSDVVLDL 64

Query: 67  -------GLGLEDEVINGYPKILYSEAKLEGKLESTAASGCSICLGDYKKDDVLRLLPDC 126
                   LGL+  VI  YP+I+  +++   +L       CSICL DY+  + +R +P+C
Sbjct: 65  PSPAAEVKLGLDRPVIESYPRIVLGDSR---RLPRPNNGPCSICLCDYEAREPVRCIPEC 124

Query: 127 GHLFHSGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVVPLA 162
            H FH+ C+D WLR + +CP+CR SP P+ ++TPL+++VPLA
Sbjct: 125 NHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Lsi03G018060 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.8 bits (260), Expect = 7.0e-23
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 0


Query: 20  YVVGISVGILFLLTTLTIATYFCTRTTVPQPNRRFRPAERRDFVVDFGL----------- 79
           Y + I++G L L++T+ +++Y C R +  + +     A       D G+           
Sbjct: 28  YSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFVAED 87

Query: 80  -----------GLEDEVINGYPK---------ILYSEAKLEGKLESTAASGCSICLGDYK 139
                      GL+  VIN YPK         ++  +   +G+   T    CSICL +Y 
Sbjct: 88  DDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETT---CSICLCEYM 147

Query: 140 KDDVLRLLPDCGHLFHSGCIDPWLRLNPSCPVCRTSPVP----TPISTPLAEVVPLA 162
           ++++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EVVPL+
Sbjct: 148 EEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201

The following BLAST results are available for this feature:

BLAST of Lsi03G018060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	1.1e-41	54.25	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	2.5e-41	50.29	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	3.8e-26	37.87	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9FL42	2.0e-22	36.42	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9M313	9.8e-22	34.46	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]

BLAST of Lsi03G018060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F576	4.6e-75	84.34	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A6J1J186	8.8e-74	83.13	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A5A7TRH5	7.4e-73	83.64	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0LEU3	3.7e-72	82.42	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A7N0V3V8	1.3e-48	58.79	RING-type domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of Lsi03G018060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935317.1	9.6e-75	84.34	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
XP_023528902.1	1.3e-74	83.73	RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo]	[more]
KAG6580759.1	2.1e-74	84.24	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022983126.1	1.8e-73	83.13	RING-H2 finger protein ATL70-like [Cucurbita maxima]	[more]
KAA0043799.1	1.5e-72	83.64	RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2...	[more]

BLAST of Lsi03G018060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	7.9e-43	54.25	RING/U-box superfamily protein	[more]
AT5G06490.1	1.8e-42	50.29	RING/U-box superfamily protein	[more]
AT2G46160.1	2.7e-27	37.87	RING/U-box superfamily protein	[more]
AT5G07040.1	1.4e-23	36.42	RING/U-box superfamily protein	[more]
AT3G61550.1	7.0e-23	34.46	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 100..141 e-value: 8.9E-9 score: 45.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 100..142 e-value: 2.5E-14 score: 53.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 100..142 score: 12.69582
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 67..147 e-value: 1.0E-20 score: 75.2
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 12..163
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 12..163
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 100..142 e-value: 1.53178E-19 score: 75.0309
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 74..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G018060.1	Lsi03G018060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding