Lsi03G017690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G017690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	chr03: 29094979 .. 29098067 (-)
RNA-Seq Expression	Lsi03G017690
Synteny	Lsi03G017690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATCTCTTTTCTATTTCCTTTTAACATATTTCCCCCAAAGCAAAACCCAACTAAATAGTCGAACTCTTCCGTCTGTGTTAGATTTTCTCCGATCAGGGCTTAACCATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACTTGCAGGATCCGAAATCGGCGCCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACTGTAAGATTTACTCTCCATTCCTTTTGAATCTCGAGATTCGGTTTTGATTTCACACATTAGTTGAGTTCTTTTAGCAGTTTGAGTTCAATTGCACTTTTCATCTTTCGTTCGATAGAGTTGAAGGGACGTGTGTATGTTCAGAATGTATTTAGGGTTTTCAGTTCTGAAAGTTGTTGGATTTCGCTTCCAAAATCCTTTATAATATTCTCCTTTCAATGCGGATTCCTTGTATGTTTTGATTGAATTGATAATTTAAATAGCGTCATGATAATTACTCTGATTTTTACTTCTTTATCTTGATTGTTCTGTTGTGATTTTAGACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGGCCAAATGTTGGTAAGTATGTTTAGTTATTTATCAGTGCTTCCAAATCGTTATCCATCAATGGTTTTTTTTTTTTTTTTTTTTTTTTGTGGCGGAACCTTACCGTCAACGGTTTTCTATTCGATAAGAATTATTATTTGTCTCTCAAATAAGTTTAGTTTTATGCTCAAGCATTTATCTTTTGATTTCCAAGGTCTGTGGTCTCTGTTTTTGTTGGGGAATAAGTAAAATGCATGGACTCATAGCCCCCCAAGGAGCGGTCGCATTGGCTAAGAAGGCCCGTTGTCTTTGAGTAATACCTACTTAGAGGTTGCATGTTTGAATCTGGCTGCCATGGGCTTTTTAAATAGAGGAATTTATGTATTGGAGGGGGAGGGATGCTGAAGTGAAGAAACAATTTACAATCCATCCCCAAATTGTAAAGGCTAAGGGGAATTACCAGAGAAAACCTGCAGTATATGTATATGCCAAAATCAAAGTGCAGTTAAAAGAAAGTTTTGATGAAGATAATAAACTAGAGCAGCAAACTTAACCGTATCCAAATTAAATTATACACACACATGAGACCGGAGATGCCTAAATGTGCACACTTACACCGGCCCATACACATCCTCTTCTTATCTTCATTTTTAACCACAAAAACTTGGCTTTGCAATTGAACCTAGGACTGCAGGCAACTTATAGTTTTTTAAGAAAAAGTCCGATGATTTTCCCCAAGTTTCTCAGCACCAGTGTGATGGTTTTAAACTCTTGACAATCATTTGACACGTTAGAGTTACAGGCATGGAATAACGAGAGTTGGGATATTTCTATTTCCATTGTTGTGTGAGTATTTGATGGTTCTGTTTGTGATCGTGAAGACATGTGAAACTTTATTTATAGACATGAAAATTTGTAAGTGGTAATTGTTGTAATACTCTTTATTTATCTAAATTAAAGTCTCTCTTTACCTACAACTTGCTCAATGAACTTGAATAGACTGTTTGGAGTAACCCTCTCCCCTACAGGCCTGCCCCCTAAACAAACTCATTTAGCTAACATTTGTTATCTGTGGTTCTTTCTCAGATTTTAAGAAGGAATTGAGATCTCTGAATAGGGAACTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTCGTTGAGAGGCCATCACAATACGCCAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGACCACATCAGGTGGGATACCTTTACACATTTACATTTAATGTATCTGTATCAGTGAAATCATTTCAATTTGGTGTTTATTTTTCCTTGTAGGCTAGAGCAACGTTGATTCATATACTAGAACTTCAGATAGAGCGTCGTAGACAAGCTGTTGAGGATATAAAAAGGTATGCTAATTAGGGTCCTGATGGAATATCAGAAATATGAATGTGGAAGAATTTATACAATCACTTACCCTTTTGCCACATCTCTTTTTGATACATTACATAATTTCTCAGGAAACTTGATTGAATGTTCAACTTAGGATTTTTGGTCCCTTTATCAATGTGATCTTATTCTTGGTGGTGTGAGCCTAGTTGGTGGAGATATGGATGTGCTATTGTAAAATTTTCAGCTCAATGCTCTAATCACGTAATCTCAATTTCTATTTTGAGGCACCTTTTCGAGGCCCATTTCTGTTCTGGCTTATACTTATGCATTCTCTCATCGAGTATTTGCTACTTTTTAGAACACGGTTTGGCTTAATAGTACCATCATCAATGATGCATTTTTGTCTAGGAGGAGAGAAGGAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTACTAGCTCTTCCATCATTGTTGAATTCAGAAAGTACAAATCTTGTCCATGCTGAATGTTTCAAACTCGAGATCCTCATATTCATGGTGCAGCTACCAAATTCATCGGTTCGGTTCAGTCAGTTTTAGTGCATACACCGTGGTGCATCGATGACGTGTCTAGGTAATTCTTAGGAAACATCTTTGTCAATCTGTGCAAGATCCAGAAGGGACTCCCCCCTCCTGTTGTCATTACTTGAGCAGATTGTTAATAGGTAGATTGTAATTAATTGATCGAACTACTTTGTAAGTTTTAATTCACCGGTTGGGTGTAGTGATTATGAAATGTACTTGAAAAAGGTCTGTTCTATAGATTGTACAATTGAGAATTCTCGGTGGTTCGAGAAGAGTGACTATGAGATTTGGGAGAAATTAATGCAATTGCGTCTCTGGCTTCTGTAATGTGTCTCTCACTATGCATTATTACTTGAAATACAACGTTACGCCAGGCTGTGGGATGCATCAATAACGATGGAGACAATGATAACTTTCCAATGTATAATTTGCTTGGTCAATTATGGATGCTTGGTTTAACCATTCATGTGCACGTGAGTAAACCATTGATATTTGATATATATATATATACCATTAC

mRNA sequence

AAAATCTCTTTTCTATTTCCTTTTAACATATTTCCCCCAAAGCAAAACCCAACTAAATAGTCGAACTCTTCCGTCTGTGTTAGATTTTCTCCGATCAGGGCTTAACCATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACTTGCAGGATCCGAAATCGGCGCCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACTACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGGCCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTGAATAGGGAACTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTCGTTGAGAGGCCATCACAATACGCCAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGACCACATCAGGTGGGATACCTTTACACATTTACATTTAATGCTAGAGCAACGTTGATTCATATACTAGAACTTCAGATAGAGCGTCGTAGACAAGCTGTTGAGGATATAAAAAGGAGGAGAGAAGGAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTACTAGCTCTTCCATCATTGTTGAATTCAGAAAGTACAAATCTTGTCCATGCTGAATGTTTCAAACTCGAGATCCTCATATTCATGGTGCAGCTACCAAATTCATCGGTTCGGTTCAGTCAGTTTTAGTGCATACACCGTGGTGCATCGATGACGTGTCTAGGTAATTCTTAGGAAACATCTTTGTCAATCTGTGCAAGATCCAGAAGGGACTCCCCCCTCCTGTTGTCATTACTTGAGCAGATTGTTAATAGGTAGATTGTAATTAATTGATCGAACTACTTTGTAAGTTTTAATTCACCGGTTGGGTGTAGTGATTATGAAATGTACTTGAAAAAGGTCTGTTCTATAGATTGTACAATTGAGAATTCTCGGTGGTTCGAGAAGAGTGACTATGAGATTTGGGAGAAATTAATGCAATTGCGTCTCTGGCTTCTGTAATGTGTCTCTCACTATGCATTATTACTTGAAATACAACGTTACGCCAGGCTGTGGGATGCATCAATAACGATGGAGACAATGATAACTTTCCAATGTATAATTTGCTTGGTCAATTATGGATGCTTGGTTTAACCATTCATGTGCACGTGAGTAAACCATTGATATTTGATATATATATATATACCATTAC

Coding sequence (CDS)

ATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACTTGCAGGATCCGAAATCGGCGCCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACTACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGGCCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTGAATAGGGAACTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTCGTTGAGAGGCCATCACAATACGCCAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGACCACATCAGGTGGGATACCTTTACACATTTACATTTAATGCTAGAGCAACGTTGATTCATATACTAGAACTTCAGATAGAGCGTCGTAGACAAGCTGTTGAGGATATAAAAAGGAGGAGAGAAGGAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Protein sequence

MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH

Homology

[Close]

BLAST of Lsi03G017690 vs. ExPASy Swiss-Prot
Match: Q9LYW3 (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.9e-72
Identity = 135/177 (76.27%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDG 178
           RPHQ          ARATLIHI+ELQI++R+QAVEDIKRRRE AQRLL ++  TLDG
Sbjct: 121 RPHQ----------ARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Lsi03G017690 vs. ExPASy Swiss-Prot
Match: Q9LZD7 (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.4e-71
Identity = 133/177 (75.14%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKD+ ++  SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDG 178
           RPHQ          ARATLIHI+ELQI++R+QAVEDIKRRRE AQ LL ++  TLDG
Sbjct: 121 RPHQ----------ARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Lsi03G017690 vs. ExPASy Swiss-Prot
Match: Q55DQ5 (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.1e-26
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 26  APEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHI 85
           AP  PP +   Y+ FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ LNR +  + 
Sbjct: 143 APPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNY 202

Query: 86  LELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQVGYLYTFTFNARATLIHILEL 145
           L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQ          AR TL+ I+  
Sbjct: 203 LQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQ----------ARETLLSIMNE 262

Query: 146 QIERRRQAVEDIKRRREGAQRLLMESLETLD 177
           QI+++ Q+ E IK+  +  +  LM S + L+
Sbjct: 263 QIKQKNQSNESIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of Lsi03G017690 vs. ExPASy Swiss-Prot
Match: Q17MI0 (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 64/171 (37.43%), Postives = 102/171 (59.65%), Query Frame = 0


Query: 8   PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  +YKLY D       AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NVDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 VGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETL 176
                     AR TL  ++ELQ  +R++  +  +   E  + ++  +  +L
Sbjct: 135 ----------ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of Lsi03G017690 vs. ExPASy Swiss-Prot
Match: Q3T123 (Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=MED7 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-22
Identity = 63/176 (35.80%), Postives = 98/176 (55.68%), Query Frame = 0


Query: 3   TATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQL 62
           +A  PPP  + K Y D       AP+PPPPI+ +YM FG+ +  DD ++  LE QG+ +L
Sbjct: 8   SALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERL 67

Query: 63  YPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYAR--RVEEISLIFKNLHHLLNS 122
           +P     D KKELR LN  + ++ L+L DIL+  P    R  ++E++ L+F ++HHL+N 
Sbjct: 68  HPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINE 127

Query: 123 LRPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETL 176
            RPHQ          AR TL  ++E+Q  +R +  E  ++  E    ++   L +L
Sbjct: 128 YRPHQ----------ARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

[Close]

BLAST of Lsi03G017690 vs. ExPASy TrEMBL
Match: A0A5A7TKB8 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005090 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 166/178 (93.26%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. ExPASy TrEMBL
Match: A0A0A0LBQ7 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 166/178 (93.26%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. ExPASy TrEMBL
Match: A0A1S3B7S4 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN=LOC103486732 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.8e-85
Identity = 166/178 (93.26%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. ExPASy TrEMBL
Match: A0A6J1DBY3 (Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=3673 GN=LOC111019312 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 162/178 (91.01%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQI+RRRQAVEDIKRRRE AQRL MESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. ExPASy TrEMBL
Match: A0A6J1FG49 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443847 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 162/178 (91.01%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. NCBI nr
Match: XP_008443001.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KAA0043764.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa] >TYK25369.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa])

HSP 1 Score: 325.1 bits (832), Expect = 3.8e-85
Identity = 166/178 (93.26%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. NCBI nr
Match: XP_031737683.1 (LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 3.2e-84
Identity = 164/178 (92.13%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+++ELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYQEELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. NCBI nr
Match: XP_004136548.2 (mediator of RNA polymerase II transcription subunit 7a [Cucumis sativus] >KAE8645773.1 hypothetical protein Csa_017289 [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83
Identity = 165/178 (92.70%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 167

[Close]

BLAST of Lsi03G017690 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG6596657.1 Mediator of RNA polymerase II transcription subunit 7b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028195.1 Mediator of RNA polymerase II transcription subunit 7b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83
Identity = 162/178 (91.01%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQIERRRQAVEDIKRRRE AQRLLMESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 318.2 bits (814), Expect = 4.6e-83
Identity = 162/178 (91.01%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDGH 179
           RPHQ          ARATLIHILELQI+RRRQAVEDIKRRRE AQRL MESLETLDGH
Sbjct: 121 RPHQ----------ARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of Lsi03G017690 vs. TAIR 10
Match: AT5G03220.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-73
Identity = 135/177 (76.27%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDG 178
           RPHQ          ARATLIHI+ELQI++R+QAVEDIKRRRE AQRLL ++  TLDG
Sbjct: 121 RPHQ----------ARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Lsi03G017690 vs. TAIR 10
Match: AT5G03500.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 267.7 bits (683), Expect = 6.7e-72
Identity = 133/177 (75.14%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKD+ ++  SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDG 178
           RPHQ          ARATLIHI+ELQI++R+QAVEDIKRRRE AQ LL ++  TLDG
Sbjct: 121 RPHQ----------ARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Lsi03G017690 vs. TAIR 10
Match: AT5G03500.2 (Mediator complex, subunit Med7 )

HSP 1 Score: 267.7 bits (683), Expect = 6.7e-72
Identity = 133/177 (75.14%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKD+ ++  SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDG 178
           RPHQ          ARATLIHI+ELQI++R+QAVEDIKRRRE AQ LL ++  TLDG
Sbjct: 121 RPHQ----------ARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Lsi03G017690 vs. TAIR 10
Match: AT5G03500.3 (Mediator complex, subunit Med7 )

HSP 1 Score: 267.7 bits (683), Expect = 6.7e-72
Identity = 133/177 (75.14%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKD+ ++  SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQVGYLYTFTFNARATLIHILELQIERRRQAVEDIKRRREGAQRLLMESLETLDG 178
           RPHQ          ARATLIHI+ELQI++R+QAVEDIKRRRE AQ LL ++  TLDG
Sbjct: 121 RPHQ----------ARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

The following BLAST results are available for this feature:

BLAST of Lsi03G017690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYW3	2.9e-72	76.27	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
Q9LZD7	9.4e-71	75.14	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
Q55DQ5	4.1e-26	41.72	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
Q17MI0	1.7e-24	37.43	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
Q3T123	6.2e-22	35.80	Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=M...	[more]

BLAST of Lsi03G017690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKB8	1.8e-85	93.26	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuw...	[more]
A0A0A0LBQ7	1.8e-85	93.26	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]
A0A1S3B7S4	1.8e-85	93.26	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1DBY3	2.2e-83	91.01	Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=...	[more]
A0A6J1FG49	2.2e-83	91.01	Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3...	[more]

BLAST of Lsi03G017690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443001.1	3.8e-85	93.26	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
XP_031737683.1	3.2e-84	92.13	LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 7a-like...	[more]
XP_004136548.2	4.6e-83	92.70	mediator of RNA polymerase II transcription subunit 7a [Cucumis sativus] >KAE864...	[more]
XP_022937468.1	4.6e-83	91.01	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG...	[more]
XP_022151348.1	4.6e-83	91.01	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]

BLAST of Lsi03G017690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03220.1	2.1e-73	76.27	Mediator complex, subunit Med7	[more]
AT5G03500.1	6.7e-72	75.14	Mediator complex, subunit Med7	[more]
AT5G03500.2	6.7e-72	75.14	Mediator complex, subunit Med7	[more]
AT5G03500.3	6.7e-72	75.14	Mediator complex, subunit Med7	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 140..167
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	PANTHER	PTHR21428	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7	coord: 2..178
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..167 e-value: 8.9E-39 score: 133.6
IPR044888	Mediator complex, subunit Med7 superfmaily	GENE3D	6.10.140.200		coord: 64..169 e-value: 1.3E-23 score: 84.8
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 66..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G017690.1	Lsi03G017690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity