Lsi03G017320 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G017320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	VQ motif-containing protein 25-like
Location	chr03: 28710258 .. 28710773 (+)
RNA-Seq Expression	Lsi03G017320
Synteny	Lsi03G017320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGATTCTGAAGAAACAACGCTCTCATCTATTGCCTAACTCGGCTCGCCCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCGGAGATCATTAAAACCGACGTTGCTAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAGCCCGCTACGGCGGAGGAGAAGATTCTTCCCGTTGAAATTCGGCCGGAAGCGGTGGCGGTGGCGAGTATTGCTGCGGCGTTCGATGATCGGAAGACGGAGATGAGCGGCGGCGGGGGGTGCCGGAGAGTGGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGATGAAGGAGAAGATGAAGAAGATGTGTTAAACGACGTCGTTGGGATGTGGAACGACGTCGTTGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTGCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGGAGAAACTCAATTTGCTTAA

mRNA sequence

ATGGACGCGATTCTGAAGAAACAACGCTCTCATCTATTGCCTAACTCGGCTCGCCCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCGGAGATCATTAAAACCGACGTTGCTAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAGCCCGCTACGGCGGAGGAGAAGATTCTTCCCGTTGAAATTCGGCCGGAAGCGGTGGCGGTGGCGAGTATTGCTGCGGCGTTCGATGATCGGAAGACGGAGATGAGCGGCGGCGGGGGGTGCCGGAGAGTGGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGATGAAGGAGAAGATGAAGAAGATGTGTTAAACGACGTCGTTGGGATGTGGAACGACGTCGTTGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTGCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGGAGAAACTCAATTTGCTTAA

Coding sequence (CDS)

ATGGACGCGATTCTGAAGAAACAACGCTCTCATCTATTGCCTAACTCGGCTCGCCCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCGGAGATCATTAAAACCGACGTTGCTAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAGCCCGCTACGGCGGAGGAGAAGATTCTTCCCGTTGAAATTCGGCCGGAAGCGGTGGCGGTGGCGAGTATTGCTGCGGCGTTCGATGATCGGAAGACGGAGATGAGCGGCGGCGGGGGGTGCCGGAGAGTGGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGATGAAGGAGAAGATGAAGAAGATGTGTTAAACGACGTCGTTGGGATGTGGAACGACGTCGTTGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTGCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGGAGAAACTCAATTTGCTTAA

Protein sequence

MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA

Homology

[Close]

BLAST of Lsi03G017320 vs. ExPASy Swiss-Prot
Match: Q9M2P8 (VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 65/155 (41.94%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 4   ILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRL 63
           I +K+RS L        ++A+H  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ L
Sbjct: 5   IFEKRRSSL-------SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSL 64

Query: 64  TGKPATAE-EKILP-VEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDE 123
           TGKP      K  P  ++      V  +      R+ E      C       + EE    
Sbjct: 65  TGKPDDQRTSKAKPRRDMHRLHRQVQDMINTEKLREPEHCDQEFCL------NAEELSMT 124

Query: 124 GEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLP 157
                       G  N +  FEGFI+ELGEFP LP
Sbjct: 125 WNGNNGAGESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of Lsi03G017320 vs. ExPASy Swiss-Prot
Match: O48522 (VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-12
Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 20  PAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKI---LP 79
           P +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTGK       +     
Sbjct: 15  PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGKQDHHHHDLPHQKG 74

Query: 80  VEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEE-------EDEGEDEEDVL 139
           ++  P +          D  K+     G C       D EEE          G++     
Sbjct: 75  LKRNPRSRRSHDHHEVHDMNKSH----GFC----INSDEEEEGMVSMTWNGNGDESSG-- 134

Query: 140 NDVVGMWNDVVGFEGFIEELGEFPLLP 157
               G  N +   +GFI+ELGEFP LP
Sbjct: 135 ----GFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of Lsi03G017320 vs. ExPASy Swiss-Prot
Match: O64868 (VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 0


Query: 22  MALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKILPVEIRP 81
           ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKPA  E K    + R 
Sbjct: 17  VSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAK--TGKKRA 76

Query: 82  EAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWNDVVG 141
           ++          DD +      G    +    + + +E+ G  ++   N      N    
Sbjct: 77  KSRITTPQEPVCDDHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT-----NTYFD 136

Query: 142 FEGFIEELGE-----FPLLPSAHQIMHGF 166
            EG I+++GE     FP+  S+   + GF
Sbjct: 137 LEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of Lsi03G017320 vs. ExPASy TrEMBL
Match: A0A6J1IYE1 (VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.3e-61
Identity = 135/175 (77.14%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+KK+   LL NSARP AMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVV----KKEDRE 120
           QRLTGKPATAEEKI+P +I P   AVA +A AFD RK+EM GGG CRRV     ++E+ E
Sbjct: 61  QRLTGKPATAEEKIVPPQIPP--AAVADVATAFDHRKSEM-GGGECRRVKTEDREEEEEE 120

Query: 121 EEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EEE+E E+EE+ L+DVVG+WNDVVGFEGFIEELGE PLLPSAHQIMHGF ETQFA
Sbjct: 121 EEEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 170

[Close]

BLAST of Lsi03G017320 vs. ExPASy TrEMBL
Match: A0A6J1F598 (VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442255 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.3e-61
Identity = 138/174 (79.31%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+KK+   LL NSARP AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR---EE 120
           QRLTGKPATAEEKI+P +I P  VAVA IA AFD RK+EM GGG CRR VK EDR   EE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPP--VAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEE 120

Query: 121 EEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EE+E E+EE+ L+DVVG+WNDVVGFEGFIEELGE PLLPSAHQIMHGF ETQFA
Sbjct: 121 EEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Lsi03G017320 vs. ExPASy TrEMBL
Match: A0A5A7TRB0 (VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005450 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 127/187 (67.91%), Postives = 143/187 (76.47%), Query Frame = 0


Query: 1   MDAILK--KQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60
           MDAILK  +QR HLLP S RP  M LH+ASHAISKPKPKIRIIHIFAPEIIKTDVANFRE
Sbjct: 1   MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61  LVQRLTGKP---ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR 120
           LVQRLTGKP    T E+KILP +I          AAAFD+RKTEM     CRR+VKKED 
Sbjct: 61  LVQRLTGKPEAITTQEDKILPPQI--------PAAAAFDNRKTEMV---SCRRMVKKEDE 120

Query: 121 EEEED------------EGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMH 171
           ++EED            EGE+EE++L++VVGMWNDVVGFEGFI+ELGEFPL+PSAHQIMH
Sbjct: 121 DQEEDYDEEEEEEEGEGEGEEEEEMLDEVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMH 176

[Close]

BLAST of Lsi03G017320 vs. ExPASy TrEMBL
Match: A0A1S3B6P9 (VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 127/187 (67.91%), Postives = 143/187 (76.47%), Query Frame = 0


Query: 1   MDAILK--KQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60
           MDAILK  +QR HLLP S RP  M LH+ASHAISKPKPKIRIIHIFAPEIIKTDVANFRE
Sbjct: 1   MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61  LVQRLTGKP---ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR 120
           LVQRLTGKP    T E+KILP +I          AAAFD+RKTEM     CRR+VKKED 
Sbjct: 61  LVQRLTGKPEAITTQEDKILPPQI--------PAAAAFDNRKTEMV---SCRRMVKKEDE 120

Query: 121 EEEED------------EGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMH 171
           ++EED            EGE+EE++L++VVGMWNDVVGFEGFI+ELGEFPL+PSAHQIMH
Sbjct: 121 DQEEDYDEEEEEEEGEGEGEEEEEMLDEVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMH 176

[Close]

BLAST of Lsi03G017320 vs. ExPASy TrEMBL
Match: A0A0A0LBB1 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 115/158 (72.78%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 1   MDAIL---KKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           M+AIL   ++QR HLLP SARP +MALH+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKP-ATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGC-RRVVKKEDR 120
           ELVQRLTGKP AT + KILP EI P        AAAFD+RKTE+  G GC RR+VKKED 
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEIPP--------AAAFDNRKTEIVSGVGCRRRMVKKEDE 120

Query: 121 EEEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFP 154
            +EED  E+EE++L DVVGMWNDVVGFEGFI+ELGEFP
Sbjct: 121 YQEED--EEEEEMLEDVVGMWNDVVGFEGFIQELGEFP 148

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: XP_038906267.1 (VQ motif-containing protein 25 [Benincasa hispida])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 157/171 (91.81%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           MDAILKKQR HLLPNSA P AMALHTASH+ISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MDAILKKQRRHLLPNSAHPAAMALHTASHSISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEED 120
           QRLTGKPATAEEKILP EI+PE VAVASIAAAFDDRKTEM G GGCRRVVKKEDREE+E+
Sbjct: 61  QRLTGKPATAEEKILPEEIQPETVAVASIAAAFDDRKTEMGGSGGCRRVVKKEDREEDEE 120

Query: 121 EGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EGEDEE+VLNDVVGMWNDVVGFE FIEELGEFPLLPSAHQIMHGF ETQFA
Sbjct: 121 EGEDEEEVLNDVVGMWNDVVGFESFIEELGEFPLLPSAHQIMHGFEETQFA 171

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: XP_022935342.1 (VQ motif-containing protein 25-like [Cucurbita moschata])

HSP 1 Score: 245.0 bits (624), Expect = 4.8e-61
Identity = 138/174 (79.31%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+KK+   LL NSARP AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR---EE 120
           QRLTGKPATAEEKI+P +I P  VAVA IA AFD RK+EM GGG CRR VK EDR   EE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPP--VAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEE 120

Query: 121 EEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EE+E E+EE+ L+DVVG+WNDVVGFEGFIEELGE PLLPSAHQIMHGF ETQFA
Sbjct: 121 EEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: XP_022983122.1 (VQ motif-containing protein 25-like [Cucurbita maxima])

HSP 1 Score: 245.0 bits (624), Expect = 4.8e-61
Identity = 135/175 (77.14%), Postives = 150/175 (85.71%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+KK+   LL NSARP AMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVV----KKEDRE 120
           QRLTGKPATAEEKI+P +I P   AVA +A AFD RK+EM GGG CRRV     ++E+ E
Sbjct: 61  QRLTGKPATAEEKIVPPQIPP--AAVADVATAFDHRKSEM-GGGECRRVKTEDREEEEEE 120

Query: 121 EEEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EEE+E E+EE+ L+DVVG+WNDVVGFEGFIEELGE PLLPSAHQIMHGF ETQFA
Sbjct: 121 EEEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 170

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: KAG7017559.1 (VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 4.8e-61
Identity = 138/174 (79.31%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+KK+   LL NSARP AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRT--LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR---EE 120
           QRLTGKPATAEEKI+P +I P  VAVA IA AFD RK+EM GGG CRR VK EDR   EE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPP--VAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEE 120

Query: 121 EEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EE+E E+EE+ L+DVVG+WNDVVGFEGFIEELGE PLLPSAHQIMHGF ETQFA
Sbjct: 121 EEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Lsi03G017320 vs. NCBI nr
Match: KAG6580809.1 (VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 137/174 (78.74%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 1   MDAILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+KK+   LL NS RP AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRT--LLQNSGRPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPATAEEKILPVEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDR---EE 120
           QRLTGKPATAEEKI+P +I P  VAVA IA AFD RK+EM GGG CRR VK EDR   EE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPP--VAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEE 120

Query: 121 EEDEGEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLPSAHQIMHGFGETQFA 172
           EE+E E+EE+ L+DVVG+WNDVVGFEGFIEELGE PLLPSAHQIMHGF ETQFA
Sbjct: 121 EEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Lsi03G017320 vs. TAIR 10
Match: AT3G58000.1 (VQ motif-containing protein )

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-15
Identity = 65/155 (41.94%), Postives = 80/155 (51.61%), Query Frame = 0


Query: 4   ILKKQRSHLLPNSARPPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRL 63
           I +K+RS L        ++A+H  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ L
Sbjct: 5   IFEKRRSSL-------SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSL 64

Query: 64  TGKPATAE-EKILP-VEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDE 123
           TGKP      K  P  ++      V  +      R+ E      C       + EE    
Sbjct: 65  TGKPDDQRTSKAKPRRDMHRLHRQVQDMINTEKLREPEHCDQEFCL------NAEELSMT 124

Query: 124 GEDEEDVLNDVVGMWNDVVGFEGFIEELGEFPLLP 157
                       G  N +  FEGFI+ELGEFP LP
Sbjct: 125 WNGNNGAGESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of Lsi03G017320 vs. TAIR 10
Match: AT2G42140.1 (VQ motif-containing protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-13
Identity = 58/147 (39.46%), Postives = 73/147 (49.66%), Query Frame = 0


Query: 20  PAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKI---LP 79
           P +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTGK       +     
Sbjct: 15  PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGKQDHHHHDLPHQKG 74

Query: 80  VEIRPEAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEE-------EDEGEDEEDVL 139
           ++  P +          D  K+     G C       D EEE          G++     
Sbjct: 75  LKRNPRSRRSHDHHEVHDMNKSH----GFC----INSDEEEEGMVSMTWNGNGDESSG-- 134

Query: 140 NDVVGMWNDVVGFEGFIEELGEFPLLP 157
               G  N +   +GFI+ELGEFP LP
Sbjct: 135 ----GFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of Lsi03G017320 vs. TAIR 10
Match: AT2G44340.1 (VQ motif-containing protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 0


Query: 22  MALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPATAEEKILPVEIRP 81
           ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKPA  E K    + R 
Sbjct: 17  VSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAK--TGKKRA 76

Query: 82  EAVAVASIAAAFDDRKTEMSGGGGCRRVVKKEDREEEEDEGEDEEDVLNDVVGMWNDVVG 141
           ++          DD +      G    +    + + +E+ G  ++   N      N    
Sbjct: 77  KSRITTPQEPVCDDHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT-----NTYFD 136

Query: 142 FEGFIEELGE-----FPLLPSAHQIMHGF 166
            EG I+++GE     FP+  S+   + GF
Sbjct: 137 LEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of Lsi03G017320 vs. TAIR 10
Match: AT3G60090.1 (VQ motif-containing protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 28 SHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKP 68
          S  I+K KPKIRIIHIFAPEII TDV NFR LVQ LTGKP
Sbjct: 35 SQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKP 74

The following BLAST results are available for this feature:

BLAST of Lsi03G017320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2P8	1.3e-13	41.94	VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1	[more]
O48522	3.3e-12	39.46	VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1	[more]
O64868	1.6e-11	36.24	VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1	[more]

BLAST of Lsi03G017320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYE1	2.3e-61	77.14	VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 ...	[more]
A0A6J1F598	2.3e-61	79.31	VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11144225...	[more]
A0A5A7TRB0	1.9e-55	67.91	VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B6P9	1.9e-55	67.91	VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4...	[more]
A0A0A0LBB1	1.1e-47	72.78	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=...	[more]

BLAST of Lsi03G017320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906267.1	1.3e-79	91.81	VQ motif-containing protein 25 [Benincasa hispida]	[more]
XP_022935342.1	4.8e-61	79.31	VQ motif-containing protein 25-like [Cucurbita moschata]	[more]
XP_022983122.1	4.8e-61	77.14	VQ motif-containing protein 25-like [Cucurbita maxima]	[more]
KAG7017559.1	4.8e-61	79.31	VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6580809.1	1.4e-60	78.74	VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi03G017320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58000.1	9.4e-15	41.94	VQ motif-containing protein	[more]
AT2G42140.1	2.3e-13	39.46	VQ motif-containing protein	[more]
AT2G44340.1	1.2e-12	36.24	VQ motif-containing protein	[more]
AT3G60090.1	1.8e-10	80.00	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..69 e-value: 8.0E-13 score: 47.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..158
IPR039834	VQ motif-containing protein 17/25	PANTHER	PTHR33143:SF3	VQ MOTIF-CONTAINING PROTEIN 17-RELATED	coord: 7..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G017320.1	Lsi03G017320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus