Lsi03G017110 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGGGTTTCCTTCTTTCTTTCTTTCTTTCACGTGCTTTTGGGTTTTTCTTCGAATTTTATATCTCCTTCCATTGTTTCTCCATTCTTTGATTTGATCGTTTTTTTGGCTTCAGTTCATCTTTCCCCGTTTGATTTCGTTTGTTAAATTAGTTTTTGTGATTCGAGTTGGTTCTTAGTTCTTTCATAAGCTTTGTGTTCAGAGTTTGCTGATTCTTGAGTTTGCCATTTTTCTTTAGTTTATGGTAATGGGAACTCTTATTATCTTCGTTGTTGTTGTTTTTCTTTCTCACCTTTCATTCTTTGTTGTTAATTCTATTTTGGGTATGTGCATTTTTTTAAAAAAAAGGAATAAATGGAGCTGAACTTTAATTCTACGAGCTGTGGTAGGTTGAAATTGAAGTTATATTCGATCGGGTTGTTTATTATAATTTTGATTTCAATGGATTATGAGATTATTTAGTATATTGATCAAATCGTTATTAAATGTAATACTGGAACGACTTAAATTATTATTTTCAACAATGAAAATTTAAGGGGAAACAATGTGTGATATGGAACACGCTGTGTATTCCACAGATACTATTAACTGTACTGTAAGAAGATTTGGGTTGTGCTACACATTTACAACATCTGAATTTTCAGCTTAATTGGACTATGAAGCCTAACCCTCTCTTTGAAATTCATGACATGGTAGGTTGTTATTTTTTTCTGAATCACGCTATTGTTAAACAGCTTTCTGTTTTTGGGAAATTTCTGAAATTTAGGTCCTCGATTAATATTTATTTAGGCACCGTTTGGTAATCATTTCATTTTTTTTTGTTTTTGAAAATTAAGCCTATTTCTTTTTATTTTCTTACCATGGTTTGTATCAATCTTAAGAAGAAGAGTTGCATTCTTAGCCAAATTCCAAAAACAAAAACTACTTTTTTTAGTTTTCAAATTTTGACTTGGTTTTTGAAAACATGGGTAAAAAGTAGATATCAAAGCAAGAGATTTAGAGGTGGAAGAAGTGTTTATAGGCGTAATTTTCATAAACCAAAAACTAAAAATGAAATTGTTACCAATTGGGGCTTAATTTTTTGTTTTTGTTTCTGGGTTTTAAAAATTAAGCTTATAAACTGTAATTCTACCCATAAGTTTCAATGTTTTGTTATCTACTTTCTACCCATATTTTCAAAAACCAAGTAAAATATTGAAACTAAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTAGAGTTTAGTTAGAGTTCAAGTGTCCTTGAGAAATGTGAGAACCATTATTGAAACAGGAAACAAGATATAAATTTCAAAAACAAAAAATAAAACATGAAGTCATTATCAAATGGAGTCTAAGTTTACACTTCCAGTTTTTTTTTTTTTTTTTTCGATCACGAGATTGTCTTTGTATCTCCCAACCACTTCTATGCTGTTCCCAGTCTTCTTAGAGAGTATGATTCTCATTTCTAGAATTAAATGAGGTACCAGTAGGGTAAGAGAACCTAGTAGCCAAGGTAGAGCCTTCCTCTTCTTCCTATTTTTTGGCCCATCATTAGCCTCTTCAGATTTCCTTATTTTTAAATGCTTCTCTAATCATTATACTACCTTGTTGAGACCAAGTAAGAACTTCAATACCTGCTCCTTCTCCGCTAGTTTAGTATATACTTAACTCTTATAGCTAACATTTTCCTCATGTATCTCATTCATTAGATTTCTTATCCCATCTAAGGAAAGAAATCCATACAACTTAGAATATTCAAAGGATTTCTATTAACTCCTCTTGTTATTATATATAATGCAATAATATACAAGCTATAACAAATTGACGATGGAATGTTATGAACGACTAGTAGTTTCAAAGTGGCTGAGAATATAAATGTTGGATGATATAAGATAGTTGCATTAGTTATTTGTTGAGAAAGATCACTTTGGCATGGTCTGCATGGACGGTCACCTGTTTTGTTATTTTCTTTGTCCCCCTTTCTGTTTAATAACGTTTGTAATTGTACCAATGTAATGCTTTCGATTGCTAATTTGTTCTGTTAATTCCTCAGGCTGCACCACCATGAGTATCGGCTCAATCAGTGTTTGCACAAGGAATGCTGTCCCTCTGAACTTCCGTGTTTGCACACAGATGGGCAGCAACATCTGTACAGTGCTGTCCCGAAGAACATCAACTTCGTGCTGTTCCTATGGCATTTCAAGACCAAAGTATGCTGATCAATCCGTCACCACAATATCGTCTTGTTCACCAAATACTAGCCAAAGATATCAGGGAGGTTGTTTCAGTTCTTGCTTCTCTAGAAGGTCAGTTGACTTCAAAGCTTTAACGGTTAAAGATCTGATCACCGATGGAGGATCACGTGGACGAGAACTTGAAATTTCAATGGCATGTAAAGGTATGAATGTGAAGCTCTCAATCCCCAATGATGGGATGTTTAGCAAAATCAAGTGTAACATGCGATGGCCAGAAAGATGGGCATCTACTGGCTTAGTTTTTGGGTGGGTGGTTTGTTATTCAACTTCTGAACCAGTCCATGCTGAAGCAGCTTATGAGAAAGAGGATAATGAAGAAAACTCTGATTCATCTCAAGTCAAATTCTCTCATGGAAAGAAGGTTTACACCGACTATTCTGTTATCGGTGAGCTTCAAAGTCTTCCATTTCCTTGTTGTACGTTAAATGGTCAATTGATAATTGCTTGTACAACCTGTTATCAAAATACCATGGATTAAAGGGGAAAATGTTAATGTAAGCAACCTGTTTGTTCTGGACAGGAATTCCTGGAGATGGAAGATGTTTGTTTCGCTCAGTCGCTCATGGTGCTTGTTTGCGATCTGGGAAACCAGCTCCAAGTGAGAGCCTTCAGAGAGAGTTGGCAGATGATTTGCGTTCAAAAGTACGTTTTATTAGTTTGTTTTAAAGAGAATACCATGGTTGCTTAACTTACACTTACACACACCCTACTGTAGCTATCTAGATTCCATCTTTCGGGCCGATTTCTTCGCAAACTTGTATATGGATGCCCCTTTACTTAAGAACGGTGCATCACACATCTTTCAGGTTGCAGATGAGTTTATCAAGAGACGCGAAGAAACAGAATGGTAAATCTCTCTCTCACAAAAGTTTCACATCAATGACTTTACTCTTGTAGGATCATAAAACATGAACACTTCCTGAAATTGGGTTTTCCTGCTTGTGTTGTCAACAGGTTTGTTGAAGGTGATTTCGATATGTATGTGTCAAATATGCGAAAACCACACGTGTGGGGAGGCGAGCCGGAGTTATTCATGGCTTCACATGTTCTTCAGTAAGCTCCCTCTCAGTCTTCTCTGTGTGTTGTGTACTGCATATATCAGTGAATTGTTTATGATGAAGGCTGTGATTGCTGCTATGCAGTGCACCTATCATAGTGTACATGTACGATAAAGATTCTGGTGGGTTGATTTCCATAGCTGAATATGGCGATGAATATGGCAAAGAAAATCCAATCAGAGTTCTGTACCATGGTTTTGGCCATTACGATGCTTTGCAAATTCCTGCAAATCAAGGGGTAGGTAGATCTAAACTCTAGTGTTCTAACTGAATCCATTGTGATTTCAATTACATTCTCTTTCATTCTATAAAATAAATCTCTTTCCATTCCAATGAGAATTCAGCATGGAGACTTCACTCTATATTTAATGCTAATGGAAGATAAGTAGAGAATCTCTCTCAAATTTCTAAAAGTTAAAGTAGATTTTTGGCTTTTACTTCCACCTATGAATTTATTTGTAATCAATATTATTATCTCAAATGTTGTTCGATCTACACTCTCATAATGGTTAAACTTTAAAAAACACACACACACAATGATTAATGATTAATCAAATATCAATTGAATCATAATTGGATTTGGTTTTTTTTTTTTAATCAAAGAAAAAACATT TTGGGTTTCCTTCTTTCTTTCTTTCTTTCACGTGCTTTTGGGTTTTTCTTCGAATTTTATATCTCCTTCCATTGTTTCTCCATTCTTTGATTTGATCGTTTTTTTGGCTTCAGTTCATCTTTCCCCGTTTGATTTCGTTTGTTAAATTAGTTTTTGTGATTCGAGTTGGTTCTTAGTTCTTTCATAAGCTTTGTGTTCAGAGTTTGCTGATTCTTGAGTTTGCCATTTTTCTTTAGTTTATGATACTATTAACTGTACTGTAAGAAGATTTGGGTTGTGCTACACATTTACAACATCTGAATTTTCAGCTTAATTGGACTATGAAGCCTAACCCTCTCTTTGAAATTCATGACATGGCTGCACCACCATGAGTATCGGCTCAATCAGTGTTTGCACAAGGAATGCTGTCCCTCTGAACTTCCGTGTTTGCACACAGATGGGCAGCAACATCTGTACAGTGCTGTCCCGAAGAACATCAACTTCGTGCTGTTCCTATGGCATTTCAAGACCAAAGTATGCTGATCAATCCGTCACCACAATATCGTCTTGTTCACCAAATACTAGCCAAAGATATCAGGGAGGTTGTTTCAGTTCTTGCTTCTCTAGAAGGTCAGTTGACTTCAAAGCTTTAACGGTTAAAGATCTGATCACCGATGGAGGATCACGTGGACGAGAACTTGAAATTTCAATGGCATGTAAAGGTATGAATGTGAAGCTCTCAATCCCCAATGATGGGATGTTTAGCAAAATCAAGTGTAACATGCGATGGCCAGAAAGATGGGCATCTACTGGCTTAGTTTTTGGGTGGGTGGTTTGTTATTCAACTTCTGAACCAGTCCATGCTGAAGCAGCTTATGAGAAAGAGGATAATGAAGAAAACTCTGATTCATCTCAAGTCAAATTCTCTCATGGAAAGAAGGTTTACACCGACTATTCTGTTATCGGAATTCCTGGAGATGGAAGATGTTTGTTTCGCTCAGTCGCTCATGGTGCTTGTTTGCGATCTGGGAAACCAGCTCCAAGTGAGAGCCTTCAGAGAGAGTTGGCAGATGATTTGCGTTCAAAAGTTGCAGATGAGTTTATCAAGAGACGCGAAGAAACAGAATGGTTTGTTGAAGGTGATTTCGATATGTATGTGTCAAATATGCGAAAACCACACGTGTGGGGAGGCGAGCCGGAGTTATTCATGGCTTCACATGTTCTTCATGCACCTATCATAGTGTACATGTACGATAAAGATTCTGGTGGGTTGATTTCCATAGCTGAATATGGCGATGAATATGGCAAAGAAAATCCAATCAGAGTTCTGTACCATGGTTTTGGCCATTACGATGCTTTGCAAATTCCTGCAAATCAAGGGGTAGGTAGATCTAAACTCTAGTGTTCTAACTGAATCCATTGTGATTTCAATTACATTCTCTTTCATTCTATAAAATAAATCTCTTTCCATTCCAATGAGAATTCAGCATGGAGACTTCACTCTATATTTAATGCTAATGGAAGATAAGTAGAGAATCTCTCTCAAATTTCTAAAAGTTAAAGTAGATTTTTGGCTTTTACTTCCACCTATGAATTTATTTGTAATCAATATTATTATCTCAAATGTTGTTCGATCTACACTCTCATAATGGTTAAACTTTAAAAAACACACACACACAATGATTAATGATTAATCAAATATCAATTGAATCATAATTGGATTTGGTTTTTTTTTTTTAATCAAAGAAAAAACATT ATGAGTATCGGCTCAATCAGTGTTTGCACAAGGAATGCTGTCCCTCTGAACTTCCGTGTTTGCACACAGATGGGCAGCAACATCTGTACAGTGCTGTCCCGAAGAACATCAACTTCGTGCTGTTCCTATGGCATTTCAAGACCAAAGTATGCTGATCAATCCGTCACCACAATATCGTCTTGTTCACCAAATACTAGCCAAAGATATCAGGGAGGTTGTTTCAGTTCTTGCTTCTCTAGAAGGTCAGTTGACTTCAAAGCTTTAACGGTTAAAGATCTGATCACCGATGGAGGATCACGTGGACGAGAACTTGAAATTTCAATGGCATGTAAAGGTATGAATGTGAAGCTCTCAATCCCCAATGATGGGATGTTTAGCAAAATCAAGTGTAACATGCGATGGCCAGAAAGATGGGCATCTACTGGCTTAGTTTTTGGGTGGGTGGTTTGTTATTCAACTTCTGAACCAGTCCATGCTGAAGCAGCTTATGAGAAAGAGGATAATGAAGAAAACTCTGATTCATCTCAAGTCAAATTCTCTCATGGAAAGAAGGTTTACACCGACTATTCTGTTATCGGAATTCCTGGAGATGGAAGATGTTTGTTTCGCTCAGTCGCTCATGGTGCTTGTTTGCGATCTGGGAAACCAGCTCCAAGTGAGAGCCTTCAGAGAGAGTTGGCAGATGATTTGCGTTCAAAAGTTGCAGATGAGTTTATCAAGAGACGCGAAGAAACAGAATGGTTTGTTGAAGGTGATTTCGATATGTATGTGTCAAATATGCGAAAACCACACGTGTGGGGAGGCGAGCCGGAGTTATTCATGGCTTCACATGTTCTTCATGCACCTATCATAGTGTACATGTACGATAAAGATTCTGGTGGGTTGATTTCCATAGCTGAATATGGCGATGAATATGGCAAAGAAAATCCAATCAGAGTTCTGTACCATGGTTTTGGCCATTACGATGCTTTGCAAATTCCTGCAAATCAAGGGGTAGGTAGATCTAAACTCTAG MSIGSISVCTRNAVPLNFRVCTQMGSNICTVLSRRTSTSCCSYGISRPKYADQSVTTISSCSPNTSQRYQGGCFSSCFSRRSVDFKALTVKDLITDGGSRGRELEISMACKGMNVKLSIPNDGMFSKIKCNMRWPERWASTGLVFGWVVCYSTSEPVHAEAAYEKEDNEENSDSSQVKFSHGKKVYTDYSVIGIPGDGRCLFRSVAHGACLRSGKPAPSESLQRELADDLRSKVADEFIKRREETEWFVEGDFDMYVSNMRKPHVWGGEPELFMASHVLHAPIIVYMYDKDSGGLISIAEYGDEYGKENPIRVLYHGFGHYDALQIPANQGVGRSKL Homology
BLAST of Lsi03G017110 vs. ExPASy Swiss-Prot
Match: Q8LBZ4 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 OS=Arabidopsis thaliana OX=3702 GN=OTU4 PE=1 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 5.2e-78 Identity = 173/340 (50.88%), Postives = 218/340 (64.12%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy Swiss-Prot
Match: Q8GYW0 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 3 OS=Arabidopsis thaliana OX=3702 GN=OTU3 PE=1 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.5e-13 Identity = 55/175 (31.43%), Postives = 82/175 (46.86%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy Swiss-Prot
Match: Q6GM06 (Deubiquitinase OTUD6B OS=Xenopus laevis OX=8355 GN=otud6b PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.8e-06 Identity = 43/183 (23.50%), Postives = 85/183 (46.45%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy Swiss-Prot
Match: Q96G74 (OTU domain-containing protein 5 OS=Homo sapiens OX=9606 GN=OTUD5 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 9.0e-06 Identity = 40/184 (21.74%), Postives = 77/184 (41.85%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy Swiss-Prot
Match: Q640H3 (OTU domain-containing protein 5-B OS=Xenopus laevis OX=8355 GN=otud5-b PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 2.0e-05 Identity = 34/137 (24.82%), Postives = 60/137 (43.80%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy TrEMBL
Match: A0A1S3B6T1 (OTU domain-containing protein At3g57810 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486791 PE=4 SV=1) HSP 1 Score: 651.4 bits (1679), Expect = 2.1e-183 Identity = 313/337 (92.88%), Postives = 324/337 (96.14%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy TrEMBL
Match: A0A5D3DP86 (OTU domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005670 PE=4 SV=1) HSP 1 Score: 651.4 bits (1679), Expect = 2.1e-183 Identity = 313/337 (92.88%), Postives = 324/337 (96.14%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy TrEMBL
Match: A0A6J1FB45 (OTU domain-containing protein At3g57810 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442443 PE=4 SV=1) HSP 1 Score: 604.4 bits (1557), Expect = 3.0e-169 Identity = 295/340 (86.76%), Postives = 312/340 (91.76%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy TrEMBL
Match: A0A6J1F5B0 (OTU domain-containing protein At3g57810 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442443 PE=4 SV=1) HSP 1 Score: 604.4 bits (1557), Expect = 3.0e-169 Identity = 295/340 (86.76%), Postives = 312/340 (91.76%), Query Frame = 0
BLAST of Lsi03G017110 vs. ExPASy TrEMBL
Match: A0A6J1DJP8 (OTU domain-containing protein At3g57810 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021529 PE=4 SV=1) HSP 1 Score: 595.1 bits (1533), Expect = 1.8e-166 Identity = 295/339 (87.02%), Postives = 310/339 (91.45%), Query Frame = 0
BLAST of Lsi03G017110 vs. NCBI nr
Match: XP_008443087.1 (PREDICTED: OTU domain-containing protein At3g57810 isoform X1 [Cucumis melo] >XP_008443088.1 PREDICTED: OTU domain-containing protein At3g57810 isoform X1 [Cucumis melo] >XP_008443089.1 PREDICTED: OTU domain-containing protein At3g57810 isoform X1 [Cucumis melo] >XP_008443090.1 PREDICTED: OTU domain-containing protein At3g57810 isoform X1 [Cucumis melo] >KAA0043710.1 OTU domain-containing protein [Cucumis melo var. makuwa] >TYK25424.1 OTU domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 651.4 bits (1679), Expect = 4.4e-183 Identity = 313/337 (92.88%), Postives = 324/337 (96.14%), Query Frame = 0
BLAST of Lsi03G017110 vs. NCBI nr
Match: XP_011652109.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 isoform X1 [Cucumis sativus] >XP_011652110.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 isoform X1 [Cucumis sativus] >XP_011652111.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 isoform X1 [Cucumis sativus]) HSP 1 Score: 640.6 bits (1651), Expect = 7.7e-180 Identity = 311/338 (92.01%), Postives = 323/338 (95.56%), Query Frame = 0
BLAST of Lsi03G017110 vs. NCBI nr
Match: XP_038903218.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 isoform X1 [Benincasa hispida] >XP_038903219.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 isoform X1 [Benincasa hispida] >XP_038903220.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 isoform X1 [Benincasa hispida]) HSP 1 Score: 630.2 bits (1624), Expect = 1.0e-176 Identity = 307/337 (91.10%), Postives = 319/337 (94.66%), Query Frame = 0
BLAST of Lsi03G017110 vs. NCBI nr
Match: XP_022935652.1 (OTU domain-containing protein At3g57810 isoform X2 [Cucurbita moschata] >XP_022935653.1 OTU domain-containing protein At3g57810 isoform X2 [Cucurbita moschata]) HSP 1 Score: 604.4 bits (1557), Expect = 6.1e-169 Identity = 295/340 (86.76%), Postives = 312/340 (91.76%), Query Frame = 0
BLAST of Lsi03G017110 vs. NCBI nr
Match: XP_022935651.1 (OTU domain-containing protein At3g57810 isoform X1 [Cucurbita moschata]) HSP 1 Score: 604.4 bits (1557), Expect = 6.1e-169 Identity = 295/340 (86.76%), Postives = 312/340 (91.76%), Query Frame = 0
BLAST of Lsi03G017110 vs. TAIR 10
Match: AT3G57810.2 (Cysteine proteinases superfamily protein ) HSP 1 Score: 292.7 bits (748), Expect = 3.7e-79 Identity = 173/340 (50.88%), Postives = 218/340 (64.12%), Query Frame = 0
BLAST of Lsi03G017110 vs. TAIR 10
Match: AT3G57810.3 (Cysteine proteinases superfamily protein ) HSP 1 Score: 292.7 bits (748), Expect = 3.7e-79 Identity = 173/340 (50.88%), Postives = 218/340 (64.12%), Query Frame = 0
BLAST of Lsi03G017110 vs. TAIR 10
Match: AT3G57810.1 (Cysteine proteinases superfamily protein ) HSP 1 Score: 280.8 bits (717), Expect = 1.4e-75 Identity = 135/202 (66.83%), Postives = 164/202 (81.19%), Query Frame = 0
BLAST of Lsi03G017110 vs. TAIR 10
Match: AT2G38025.1 (Cysteine proteinases superfamily protein ) HSP 1 Score: 78.6 bits (192), Expect = 1.1e-14 Identity = 55/175 (31.43%), Postives = 82/175 (46.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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