Lsi03G013880 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G013880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome c biogenesis protein CcsA
Location	chr03: 24855442 .. 24859992 (+)
RNA-Seq Expression	Lsi03G013880
Synteny	Lsi03G013880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATATTAACTCATATATCTTTTTCGGTCATTTTAATTGTCATTACAATTCAGTTAATAACCCTATTAATCGATGAAACCGTAGGACTCTATGTTTCGTCAGAAAAGGGCATGATAGCTACTTTTTTCTGTATAACAGGATTATTAGTTACTCGTTGGATTTATTTGAGGCATTTACCTTTAAGTGATTTATATGAATCATTACTATTTCTTTCATGGGGTTTCTCCATTATTCATCTATTTACGTATTTTAAAAAATATAAAAACCATTTAAGTGTAAGCGCAATAACCGCGCCAAGTACTATTTTTACCCAAGGTTTTACTACTTCAGGTTTTTTAACTGAAATGCATCAATCCCCACTATTAGTTCCCGCTCTCCAATGTAGAATATATAAATTCTAGAATTCGAAATTCTAGAATCAAAATAATAAAAAAATGTGTCACTATATAATTTAATTTCGAATTTGGAGTTTCTAACTATAATTACTATTACTATTATATTATTCATTATAATAATAACTTGTTATAATTAAAGATAACTTTTTGATAATTGAATGAAATTATACGGTTTTTACTTTTTTTACTACAAAAAAAAACAATATGTCGTCTATTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTAGGTATAATAACAGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGATATTAAGAGAGGGTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGGGTCTTATCGGGCTGCTTTATTTCATTTGATTACTCATGCTTATTCAAAAGCGTTACAACATATATCACTGTCAAGAGTGAATTTTTTTTATTTCAATATTTTGAGGCAAAAGATTAGATTACAAACTTGGAAAAAAAAAGGATTGGGTTGCGCTATATGGATAAAATACTCAAGAAATACAATTATTTTGATTGTAAACACGTGTCTACTCCATTTGATTCAAGTGTTCACTTATTTTCTATTGAAAATGAAAGTGAAGTAATTAATCAAAAGGAGTATGCTAGTGTGATTGGTAGTCTACGATATGCAACAGATTGTACTAGACCTGACATTGCATATGCAGTAGGAGTTCTTAACAAGTTTACAAGTAAGCCAGGTAAAGAGCATTGGCATGTCATCGATCGTTTATTGGGAACAAAAGATCATGGCTTACTTTATAAAAAATATCCTGTTGTTATTGAAGGATTTTCTTATGCTGATTGGAATACATTGTCAGGTGATTCTCTATCTACTACAGGGTATATTTTTACCTTAGGAGGTAGTCTATTTGTTGGAAGTCTAAAAAACAAACGATTATTGCCAACTCTACTATGGAAGTAGAGCTTATTGCTCTAGCTTCAGCCAGTGAGGAAGCAAGTTGGCTAAGATATTTATTATATAAAATTCCAATGTGGGAGAAACCAATACTTCCTATCTTGATAAATTGTGATAGCACTGCCACAATTGGTAGAGTAAAAAATCGTTTTTATAACGGTAAATCCAGACCTATAAGACAAAAACATGAGATCTTATTTAAATATTGGGATCATTAATGTGAATTACATTAAATCTTGTGATAATCTTGCAGATCTATTAACAAATGCCTTAACTAGAGAAAGGGTCTGGAACACATCGAGGGGGATGGGGTTGAAGCCCTTATAATTGTCATGAGCCATATATAAGGATACCCACCTACTGATCAGAGATCCTGAGAACTAGGTTCAAAGGGAAAAACGAATTATAAGGTGGCCGAGAAATGCACTGTCTTTATATTTTAATCAATCCTTATGATGTAAGTGCATTATTCTATAACGATGTGGAGGGTTGAGTTTTTCAATAAACTCTTAATAAAATTTGTAGCTCTTATGAGTAGGGTGTGTTATGTTATAGGAGCACCCTTGACAAATTTTACCTATATGAGTATGAGAGTGAGGCCGCTCTCTATGAGAATATGGGGCTTATTCTCAAATATACTCATGAAATACCGGGATTAGCACAAGGCCTTAAAGTGCTAACCAATAAAGCTCATGTCAACACCTAGATAATTATGTGTGGATAATAAGTTTTCTATTTCCTCTTTAACGTTATAGTTCAAGTCAGAGACCACTACTAATGCTAGAATAGAGATTATTATTTCACTAGTAAAGGTTCAATGCAGAGTCATACCTTTATGCTGCATAATTATCTTTCTTTTAGCCAATTCTATTTTGATGTTTAATTTTAAATATTAAAAATGAGTGGGGGAATGTTGTAATATTTTTAATATTTAATACATTTTTTAAATGTTGAGTTAAAGGCTCGAGCGTTTTTTCATTAAAAAAGACAAAAAAACGTAATTGCAAAAAATGCTTACAACATTCGTACATTTATTATGTTTACAACATTTGTACATTTATTACTAAACTTTTAACTTAAATTTTCAAGATCCAAGATTCAATATAAATACTTCACTCTCATTCTCTCAATACAAACCAACCAACAAATACATCTTTCTCTCTTGCTTTCTCTCATTTCTATCCTTAGCTCTTTTAAGAGCAATTGACCAAAAGAAGAGTGTTTTTAGTTGTGGAGCTTTGAGCTCAACCTTTCAGTGCAGAGTGGTTTGAGCTACACAACGTTTCAGTTGGATTGTTGTATCCTGGGGGACAGGCCAGAGAATATCTGTTGCACCGGTGGTTGATATTAAAGAATTTCAATATACACCGCAGAGGGCTTGAAAGAGCCAGATATCCACGCCTCAACTTGATTGTTTACGTATCTATTTCTCAATATTTACTCTATTTTTTCTCTATTATTTGTAATTTTCCCATCAGTTATGTATGAATATTAGTAATCATGTGCGGCAAAATTGATATTATCAAAAATGTTGTGATGACAAAATAAATATTAAAAAAAATTAAGGACAAGGAAATGAGTTAAATTTATTTTAAGGTATAGCAAGAGAATCTGCCGGTAGTTGCCACGTTGGAAAGACTGTGTTGGGCTGTCGGCCCACCTACACCAGATGGGCACTCCATAAGGCCATACCTTTACGAGATCAATCACAATGAACCGGAAGTGCCACGTCAGATAGTGGGCCCACTATATCTCCATTTTCATGCCCTCAGCCCACACTCAACAACAAAATCCACCAGTCAAAATTGGATGTTTTTTGCTAAACATTTACCCGGGGAAATAATTTATTATATTTTTTTGGTACGATAATTTATTATTTTATTCTCTTCTCACTTTTCAAAGAGGTGTACATCGGTCGGTTTGTGCGGTCTTGGACCAACAATTAATCAAAAAAATTAGTTGGCATTCGATCAACAGTCGATTAATTTCATCGTTTTTCTAAGTCTCATATCTTTAGAATTTTCTTCTTCATAGACTTATAGATATAGAAGAAGAAGAGGAAGAGAAGAACGTGAGGGAAAAAAAATCCTAATGCACACCATGGTTCGTTGGTTAGTCGGGGGTGTCAGTTTTTTTTTTTTTTGTACAAAAACCAACTACCGACCGACCATAGTACATCTATGACCGATCACATTAATTCGATTAGTTTCGGTGGTTGGATTGTTTTCAGTGCTTTTATGTACACCCTTTACTTTTCATTTGTTTTCAATTTCATTAAATTGAATCTTAGATTTTAGAAAAAGATATTTAAATATTTATATATGATTGGATGTTTACTAACTTATTCACAAATATTAATATAAAAAAGCAATGTAAAAATATTTATGAGCTTATTAATTTAAATAAAACCAAGATACACAAAAAAAAATTATGTTTCAAGAATGCATAAATTAATCATTAAATAACTTTAACAAACACATAGTCTTCAATGAGAATTTAGCCGCCTCGCGGTTATATTAGGCACCTCTTTTTTTTTTTTTTTTATCGTTGGTTTATAGAGAAACACCATGTCATCATCAATTGCACGACAACAACACGTCATCCACAACATTGAGATTTGGTTTGATAAAAAAAATGAAATCTTATTGGACATCATTTGATTATTGATTTGCAAAAGTTGATCGATTCGATTGGATTCGAAATCGAACCGATGTTCACTTTTATTGTTCATCATTGTCCTAACTTTTGAATCGACAACCTCCACTGTGAAGAATAGTTATTTATTATCACACTAAGTCATGCACTAAGCTATTGTAAGAATGATCTTAAGGTTATTGTATATACTTGATGCCATATAAACTATGCTCATTTTGATAGAAACTATACAATATTTAAAAGTTAATAAACTAAAAATAAAATAAACAAGATTTTTAGAGATCAAAATAAAGAAACCATGAGTAAAGTTAAGAAACTAAAATAAAATATTTAAAATTGTAGGGATCAAAATGAAATATAAATTAAATATATTTTTTTTTAGTATAACAAATGTTGTTATGAATATT

mRNA sequence

CATATATTAACTCATATATCTTTTTCGGTCATTTTAATTGTCATTACAATTCAGTTAATAACCCTATTAATCGATGAAACCGTAGGACTCTATGTTTCGTCAGAAAAGGGCATGATAGCTACTTTTTTCTGTATAACAGGATTATTAGTTACTCGTTGGATTTATTTGAGGCATTTACCTTTAAGTGATTTATATGAATCATTACTATTTCTTTCATGGGGTTTCTCCATTATTCATCTATTTACGTATTTTAAAAAATATAAAAACCATTTAAGTGTAAGCGCAATAACCGCGCCAAGTACTATTTTTACCCAAGGTTTTACTACTTCAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGATATTAAGAGAGGGTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGGGTCTTATCGGGCTGCTTTATTTCATTTGATTACTCATGCTTATTCAAAAGCGTTACAACATATATCACTGTCAAGACAAGAGAATCTGCCGGTAGTTGCCACGTTGGAAAGACTGTGTTGGGCTGTCGGCCCACCTACACCAGATGGGCACTCCATAAGGCCATACCTTTACGAGATCAATCACAATGAACCGGAAGTGCCACGTCAGATAGTGGGCCCACTATATCTCCATTTTCATGCCCTCAGCCCACACTCAACAACAAAATCCACCAGTCAAAATTGGATTATAACAAATGTTGTTATGAATATT

Coding sequence (CDS)

CATATATTAACTCATATATCTTTTTCGGTCATTTTAATTGTCATTACAATTCAGTTAATAACCCTATTAATCGATGAAACCGTAGGACTCTATGTTTCGTCAGAAAAGGGCATGATAGCTACTTTTTTCTGTATAACAGGATTATTAGTTACTCGTTGGATTTATTTGAGGCATTTACCTTTAAGTGATTTATATGAATCATTACTATTTCTTTCATGGGGTTTCTCCATTATTCATCTATTTACGTATTTTAAAAAATATAAAAACCATTTAAGTGTAAGCGCAATAACCGCGCCAAGTACTATTTTTACCCAAGGTTTTACTACTTCAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGTACTATTTGGAGCTACTTTAGCTCTTGCTCAAAAAGATATTAAGAGAGGGTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGGGTCTTATCGGGCTGCTTTATTTCATTTGATTACTCATGCTTATTCAAAAGCGTTACAACATATATCACTGTCAAGACAAGAGAATCTGCCGGTAGTTGCCACGTTGGAAAGACTGTGTTGGGCTGTCGGCCCACCTACACCAGATGGGCACTCCATAAGGCCATACCTTTACGAGATCAATCACAATGAACCGGAAGTGCCACGTCAGATAGTGGGCCCACTATATCTCCATTTTCATGCCCTCAGCCCACACTCAACAACAAAATCCACCAGTCAAAATTGGATTATAACAAATGTTGTTATGAATATT

Protein sequence

HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLPLSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGMFLCGANDLITIFLQNVSVYAPTYYLDIPRKMYVLFGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALQHISLSRQENLPVVATLERLCWAVGPPTPDGHSIRPYLYEINHNEPEVPRQIVGPLYLHFHALSPHSTTKSTSQNWIITNVVMNI

Homology

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BLAST of Lsi03G013880 vs. ExPASy Swiss-Prot
Match: Q2QD41 (Cytochrome c biogenesis protein CcsA OS=Cucumis sativus OX=3659 GN=ccsA PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.0e-50
Identity = 108/116 (93.10%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLI+ETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLINETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSW FSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWAFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. ExPASy Swiss-Prot
Match: Q0ZIW9 (Cytochrome c biogenesis protein CcsA OS=Vitis vinifera OX=29760 GN=ccsA PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-40
Identity = 92/116 (79.31%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSV+ IVITI LITLL+DE VGL  SSEKGMIATFFCITGLLVTRWIYL H P
Sbjct: 8   HILTHISFSVVSIVITIHLITLLVDEIVGLSDSSEKGMIATFFCITGLLVTRWIYLGHFP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESL+FLSW FSIIH+  YFKK+KNHL  SA+TAPS IFTQGF TS  L  M
Sbjct: 68  LSDLYESLIFLSWSFSIIHIVPYFKKHKNHL--SALTAPSAIFTQGFATSGLLTEM 121

[Close]

BLAST of Lsi03G013880 vs. ExPASy Swiss-Prot
Match: Q09WW9 (Cytochrome c biogenesis protein CcsA OS=Morus indica OX=248361 GN=ccsA PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-39
Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSV+ IVITI LITLL+DE +GLY S EKGM+ TFFCITGLL+TRWIYLR+LP
Sbjct: 8   HILTHISFSVVSIVITIHLITLLVDEIIGLYDSLEKGMMTTFFCITGLLMTRWIYLRYLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LS+LYESL+FLSW FSIIH+  YFKKYKN+L   AITAPS IFTQGF TS  L  M
Sbjct: 68  LSNLYESLIFLSWSFSIIHMVPYFKKYKNYL--KAITAPSAIFTQGFATSGLLTEM 121

[Close]

BLAST of Lsi03G013880 vs. ExPASy Swiss-Prot
Match: B1NWJ8 (Cytochrome c biogenesis protein CcsA OS=Manihot esculenta OX=3983 GN=ccsA PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.0e-39
Identity = 91/116 (78.45%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSV+ IVITI LITLL DE V LY SSEKGMI TFFCITGLLVTRWI+L HLP
Sbjct: 8   HILTHISFSVVSIVITIHLITLLADEFVELYDSSEKGMITTFFCITGLLVTRWIFLGHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESL+FLSW FSIIH+  YFKK+KN L  SAITAPST FTQGF TS  L  M
Sbjct: 68  LSDLYESLIFLSWSFSIIHMVPYFKKHKNFL--SAITAPSTFFTQGFATSGLLTDM 121

[Close]

BLAST of Lsi03G013880 vs. ExPASy Swiss-Prot
Match: Q49KU9 (Cytochrome c biogenesis protein CcsA OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ccsA PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-38
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFS+I IVITI LI+L +DE VGLY SSEKGM ATFFCITGLLVTRWIY  H P
Sbjct: 8   HILTHISFSIISIVITIFLISLSVDEIVGLYDSSEKGMTATFFCITGLLVTRWIYSGHFP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESL+FLSW FS+IH+  YFKK+KN+L  S ITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLIFLSWSFSVIHMVPYFKKHKNYL--STITAPSTIFTQGFATSGLLTEM 121

[Close]

BLAST of Lsi03G013880 vs. ExPASy TrEMBL
Match: A0A2I6C0D7 (Cytochrome c biogenesis protein CcsA OS=Lagenaria siceraria OX=3668 GN=ccsA PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 111/116 (95.69%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. ExPASy TrEMBL
Match: A0A7G9IT87 (Cytochrome c biogenesis protein CcsA OS=Lagenaria siceraria var. microcarpa OX=2726058 GN=ccsA PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 111/116 (95.69%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. ExPASy TrEMBL
Match: A0A7T3UT97 (Cytochrome c heme attachment protein OS=Benincasa hispida OX=102211 GN=ccsA PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.8e-49
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. ExPASy TrEMBL
Match: A0A2Z2CGJ0 (Cytochrome c biogenesis protein CcsA OS=Coccinia grandis OX=387127 GN=ccsA PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.4e-48
Identity = 109/116 (93.97%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDL ESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLSESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. ExPASy TrEMBL
Match: A0A1P8LE41 (Cytochrome c biogenesis protein CcsA OS=Citrullus mucosospermus OX=519315 GN=ccsA PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.4e-48
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLI+ETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIEETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSII+LFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIYLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. NCBI nr
Match: YP_009456196.1 (cytochrome c biogenesis protein [Lagenaria siceraria] >AUJ21961.1 cytochrome c biogenesis protein [Lagenaria siceraria] >QNM38581.1 cytochrome c heme attachment protein [Lagenaria siceraria var. microcarpa])

HSP 1 Score: 206.8 bits (525), Expect = 2.4e-49
Identity = 111/116 (95.69%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. NCBI nr
Match: YP_010131149.1 (cytochrome c heme attachment protein [Benincasa hispida] >QPZ75797.1 cytochrome c heme attachment protein [Benincasa hispida] >QSQ72360.1 cytochrome c biogenesis protein [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-48
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. NCBI nr
Match: AOX48830.1 (cytochrome c biogenesis protein [Coccinia grandis])

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-47
Identity = 109/116 (93.97%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDL ESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLSESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. NCBI nr
Match: YP_009431692.1 (cytochrome c biogenesis protein [Citrullus rehmii] >ASY96296.1 cytochrome c biogenesis protein [Citrullus rehmii])

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-47
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLI+ETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIEETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSII+LFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIYLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. NCBI nr
Match: QZL38644.1 (cytochrome c biogenesis protein [Citrullus naudinianus])

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-47
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLIDETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 60
           HILTHISFSVI IVITIQLITLLI+ETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP
Sbjct: 8   HILTHISFSVISIVITIQLITLLIEETVGLYVSSEKGMIATFFCITGLLVTRWIYLRHLP 67

Query: 61  LSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
           LSDLYESLLFLSWGFSII+LFTYFKKYKNHLSVSAITAPSTIFTQGF TS  L  M
Sbjct: 68  LSDLYESLLFLSWGFSIIYLFTYFKKYKNHLSVSAITAPSTIFTQGFATSGFLTEM 123

[Close]

BLAST of Lsi03G013880 vs. TAIR 10
Match: ATCG01040.1 (Cytochrome C assembly protein )

HSP 1 Score: 132.5 bits (332), Expect = 5.4e-31
Identity = 74/118 (62.71%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   HILTHISFSVILIVITIQLITLLI--DETVGLYVSSEKGMIATFFCITGLLVTRWIYLRH 60
           HILTHISFSV+ IV+TI  +TLL+  DE +G + SS+KG+I TFF ITGLL+TRWIY  H
Sbjct: 8   HILTHISFSVVSIVLTIYFLTLLVNLDEIIGFFDSSDKGIIITFFGITGLLLTRWIYSGH 67

Query: 61  LPLSDLYESLLFLSWGFSIIHLFTYFKKYKNHLSVSAITAPSTIFTQGFTTSATLGGM 117
            PLS+LYESL+FLSW FSIIH+ +YF K K    ++ ITAPS IF QGF TS  L  M
Sbjct: 68  FPLSNLYESLIFLSWAFSIIHMVSYFNK-KQQNKLNTITAPSVIFIQGFATSGLLNKM 124

[Close]

BLAST of Lsi03G013880 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-21
Identity = 77/178 (43.26%), Postives = 99/178 (55.62%), Query Frame = 0


Query: 39  IATFFCITGLLVTRWIYLRHLPLSDLYE-----------SLLFLSWGFSIIHLFTYFKKY 98
           +  F  + G+L   WI        DL+E           +LLFL+    ++ +    K  
Sbjct: 184 VGDFGLLLGILGLYWI-TGSFEFQDLFEIFNNLILNNRVNLLFLTLCAFLLFVGPIAKSA 243

Query: 99  KNHLSV---SAITAPSTIFTQGFTTSATLGGMFLCGANDLITIFLQNVSVYAPTYYLDIP 158
           +  L V    A+  P+ I       +    G+FL     L+ +F+   S+    Y + + 
Sbjct: 244 QFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVAR--LLPLFIVIPSI---MYIISLI 303

Query: 159 RKMYVLFGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKAL 203
             + VL GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR+ALFHLITHAYSKAL
Sbjct: 304 GIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYSKAL 355

[Close]

BLAST of Lsi03G013880 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C )

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-09
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 93  VSAITAPSTIFTQGFTTSATLGGMFLCGANDLITIFLQNVSVYAPTYYLDIPRKMYVLFG 152
           VSA    +T+ T G    A    +F      LI I     S  A T +L           
Sbjct: 252 VSASIHAATMVTAGVFMIARCSPLFEYPPTALIVI----TSAGATTSFL----------A 311

Query: 153 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALQHIS 207
           AT  + Q D+KR +AYST SQLGYM+ A G+ +Y  ++FHL+ HA+ KAL  +S
Sbjct: 312 ATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLS 351

[Close]

BLAST of Lsi03G013880 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A )

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-09
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 93  VSAITAPSTIFTQGFTTSATLGGMFLCGANDLITIFLQNVSVYAPTYYLDIPRKMYVLFG 152
           VSA    +T+ T G    A    +F      LI I     S  A T +L           
Sbjct: 252 VSASIHAATMVTAGVFMIARCSPLFEYPPTALIVI----TSAGATTSFL----------A 311

Query: 153 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALQHIS 207
           AT  + Q D+KR +AYST SQLGYM+ A G+ +Y  ++FHL+ HA+ KAL  +S
Sbjct: 312 ATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLS 351

[Close]

BLAST of Lsi03G013880 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B )

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-09
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 93  VSAITAPSTIFTQGFTTSATLGGMFLCGANDLITIFLQNVSVYAPTYYLDIPRKMYVLFG 152
           VSA    +T+ T G    A    +F      LI I     S  A T +L           
Sbjct: 252 VSASIHAATMVTAGVFMIARCSPLFEYPPTALIVI----TSAGATTSFL----------A 311

Query: 153 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALQHIS 207
           AT  + Q D+KR +AYST SQLGYM+ A G+ +Y  ++FHL+ HA+ KAL  +S
Sbjct: 312 ATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLS 351

The following BLAST results are available for this feature:

BLAST of Lsi03G013880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD41	3.0e-50	93.10	Cytochrome c biogenesis protein CcsA OS=Cucumis sativus OX=3659 GN=ccsA PE=3 SV=...	[more]
Q0ZIW9	1.3e-40	79.31	Cytochrome c biogenesis protein CcsA OS=Vitis vinifera OX=29760 GN=ccsA PE=3 SV=...	[more]
Q09WW9	2.4e-39	75.86	Cytochrome c biogenesis protein CcsA OS=Morus indica OX=248361 GN=ccsA PE=3 SV=1	[more]
B1NWJ8	4.0e-39	78.45	Cytochrome c biogenesis protein CcsA OS=Manihot esculenta OX=3983 GN=ccsA PE=3 S...	[more]
Q49KU9	2.0e-38	75.86	Cytochrome c biogenesis protein CcsA OS=Eucalyptus globulus subsp. globulus OX=7...	[more]

BLAST of Lsi03G013880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I6C0D7	1.2e-49	95.69	Cytochrome c biogenesis protein CcsA OS=Lagenaria siceraria OX=3668 GN=ccsA PE=3...	[more]
A0A7G9IT87	1.2e-49	95.69	Cytochrome c biogenesis protein CcsA OS=Lagenaria siceraria var. microcarpa OX=2...	[more]
A0A7T3UT97	5.8e-49	94.83	Cytochrome c heme attachment protein OS=Benincasa hispida OX=102211 GN=ccsA PE=4...	[more]
A0A2Z2CGJ0	6.4e-48	93.97	Cytochrome c biogenesis protein CcsA OS=Coccinia grandis OX=387127 GN=ccsA PE=3 ...	[more]
A0A1P8LE41	8.4e-48	93.10	Cytochrome c biogenesis protein CcsA OS=Citrullus mucosospermus OX=519315 GN=ccs...	[more]

BLAST of Lsi03G013880 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009456196.1	2.4e-49	95.69	cytochrome c biogenesis protein [Lagenaria siceraria] >AUJ21961.1 cytochrome c b...	[more]
YP_010131149.1	1.2e-48	94.83	cytochrome c heme attachment protein [Benincasa hispida] >QPZ75797.1 cytochrome ...	[more]
AOX48830.1	1.3e-47	93.97	cytochrome c biogenesis protein [Coccinia grandis]	[more]
YP_009431692.1	1.7e-47	93.10	cytochrome c biogenesis protein [Citrullus rehmii] >ASY96296.1 cytochrome c biog...	[more]
QZL38644.1	1.7e-47	93.10	cytochrome c biogenesis protein [Citrullus naudinianus]	[more]

BLAST of Lsi03G013880 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01040.1	5.4e-31	62.71	Cytochrome C assembly protein	[more]
ATCG01010.1	3.0e-21	43.26	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein	[more]
ATMG00060.1	5.8e-09	37.72	NADH dehydrogenase subunit 5C	[more]
ATMG00513.1	5.8e-09	37.72	NADH dehydrogenase 5A	[more]
ATMG00665.1	5.8e-09	37.72	NADH dehydrogenase 5B	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 109..202 e-value: 2.3E-17 score: 63.2
IPR045062	Cytochrome c-type biogenesis protein CcsA/CcmC	PANTHER	PTHR30071	HEME EXPORTER PROTEIN C	coord: 1..114
None	No IPR available	PANTHER	PTHR30071:SF1	CYTOCHROME B/B6 PROTEIN-RELATED	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013880.1	Lsi03G013880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0020037	heme binding