Lsi03G013440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G013440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SGF29 C-terminal domain-containing protein
Location	chr03: 24338315 .. 24340995 (-)
RNA-Seq Expression	Lsi03G013440
Synteny	Lsi03G013440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGGCAGAGAAAACGAAAAGAATGAAGGCAGATTCAGATAATGCTCGCGTTTCTCCTGCTATGAGAAACCTCGAGACTTGTGCTAATATGAAGGATGAACAGGTCTGTATGTCATTTGCCAGGTTGTATGGTTTATTTATTTATTTTTTCCACTTTTAAACAGACCAAAAACAATTTCAATTGATTTGATTAATTTCAAGTAAAGGTAGCTATTTAGTGAGCATCTACTGCTATTTTCAGGTGGCAGCCAGGGTGACGCCAGACGGGGCTGAGAAGGATGAATGGTTTATTGTAAAAGTGATACATTTTGATAAAGAGACAAAACTGTGAGTTGAATTATAATAACAAGTTCTTAACAGCATCTTATTGGGAAGAAAAAAAAAAAGAAAAAAAAGATTGGTGGGAAGTATCTTTCATGGACAACTCAGATCTCACCGTGCCCATTTATTCAAGTACAAATTTCAACATTGCCTTCTTACAGGCTTCTCCAATATTAGTAATAAGTGACTAGTGTGACTCTGCGTCAATTTCCCTTTTCAAAGATAACTATTTACATGGCTACATCTGTGCTCCTTATTGTTTTGCGTATTTGATTATGAGCACTGTTTTGAAATCTTTTTTGAGCTTAATTTGTAAATTTTTAGAACCTGTCGAATCATTTAAAACATGCTTAATTGTTATAATCTTACTTAGATGATCTTGTTTCAAGTAGGATTTTCTTCACATGTTTGTAGTTAGTAAAAAATTGAGTATAAGTACAAGTTTGACATTAACCTTGATGCAGAATCTCATGGTTTATCTTCTATACGGAAAAAAAAAAGGCCACATTAATGATTAAAGCATAATACTTTTTCAGACACCAAATCTCCTTTATGATATTTCGTTGTTTAATATGGAATATGCACATGTACAGATTTGAAGTACTAGATGAGGAACCAGGCGATGAAGATGAAGGTGGAGGGCAAAGGTAAAGCTATTCGATTATATCCTTGCCCTTAACTTTATTTCTGCACAATTATCTAGATTTTATTTATTTATCCTTTTGTCCTACTTAATTGGAAAGTTCCTTCATTCAGTTTGATGCCTAATCAACCAATGTTTAATTTGATTTAATTCCAGAAAATACAAATTACCAATGTCAGCCATCATTTCCTTTCCGAAACGAAATGATCCTTCCACCGTCCCTGAATTCCTACCTGGAAGACGAGTCTTAGCTGTTTATCCAGGAACAACCGCTCTTTATAGGGCAACAGTTGTGAATGGTCATCGCAAGGTCATCATCTCATCCCTACACCTTCTTCTATTATATTTATACACCAAACTATCTCAATTCTCTTGCTTATAACCTAGACTGTGTTAGCATAGATTATATTTATTTATTTTATGTGCAACTCACTGACAAGTAAATTTCTCTTGCAATGGATGACCTCCTTTAAATAACTCTGCATGCTTCCAGAGGAAGACAGACGAGTAAGTACCTCATATTCTTTTAAGGTTCATTACGTCATTTCTACTCGGGTTGTCATCTCTTTCATGACTTTGGTGTTTTGATTCCTTTAACATCTCATGTAAATTAGCATCTCCTAGGCCCCGATTGGCAATGGAATATGGGGGGAAATTTTGGCCTTTTCTGCTCTCCATTTTGATTTCTTACATAGTATAGATGGGTTCAATCAGGCTTTCTGTAGAACTTATTTCCTTCATGTTAGAACTTGGTGTCCCAAATGCTACTTTGATCTGATCTGAAAGGTTTATGGTGCAATGTGGGCTTTAGGTGAACTTGAGCCAACTTTAAGAAGAGGAAAAAGTGTCTTCAATCCACTAAAATCAACTTTTAAATTAAGAAAAATTCTAAAAACACTAAAAAACACTTTAAGAAAAGCATACTTCTTCCTTCAAGCTATTATCACCGCTTTTCATTATAGTCATTCTTATTTAGTTTTCAATTGGATATCTCTATTGTAATCGCCAATATATTTTTGTAGTTTCCTTTAATTAATTTATCAATGAAATATTTTTTATCCAAAAAAAAAAGTCAGATTTTGTACGCACGGGATGGTGTGATGTGGTTTGATTTCTCTGTTTCGTTTGAAATGTGTGCTGCCATCAGTATTGACCGACTACGCCATGTGCCAATTTTCAATGTGATTATTTTTCATAATATGATTTTCCATGTCAAAAATGATGTGATCTTGCCGTTCTCACGTCTAAGAAACTGGAACTTGCTTCTTCTGTATACTACAACATGATCTTTTGTGCATTACAAATTCATTCTTATGTTTTGTTCTGGACAGTTACTTGTTGGAATTCGACGATGACGAGGAAGACGGGTCGTCGACCTTGCCCCAAAGAACAGTACCCTTTCATAAAGTGGTGGCCTTGCCTGAAGGACTTCGCCAGTAAGCTCCCTGTATTTATATTGTGAATAAAATATAAGGTTGTATGTAAATCGTAGACCAATATAAAATCTACTTATCTGTCTTTAAATTTGAGAGATGATAATGCATTCAGTACCTTCACACTTTGGCCTTATTAAGCTCTAACAATGGTGAGGAAAACCCATGATAATTATTGGTTGATCCTTTTTAGTGGTTGGAGGAATCCCAATAATATATGTCCTCATGGGTGGATGTTCTCTAAATTATAACAATAATAACAGCTTGTTTTTTATCTTT

mRNA sequence

ATGTATGTGGCAGAGAAAACGAAAAGAATGAAGGCAGATTCAGATAATGCTCGCGTTTCTCCTGCTATGAGAAACCTCGAGACTTGTGCTAATATGAAGGATGAACAGGTGGCAGCCAGGGTGACGCCAGACGGGGCTGAGAAGGATGAATGGTTTATTGTAAAAGTGATACATTTTGATAAAGAGACAAAACTATTTGAAGTACTAGATGAGGAACCAGGCGATGAAGATGAAGGTGGAGGGCAAAGAAAATACAAATTACCAATGTCAGCCATCATTTCCTTTCCGAAACGAAATGATCCTTCCACCGTCCCTGAATTCCTACCTGGAAGACGAGTCTTAGCTGTTTATCCAGGAACAACCGCTCTTTATAGGGCAACAGTTGTGAATGGTCATCGCAAGAGGAAGACAGACGATTACTTGTTGGAATTCGACGATGACGAGGAAGACGGGTCGTCGACCTTGCCCCAAAGAACAGTACCCTTTCATAAAGTGGTGGCCTTGCCTGAAGGACTTCGCCAGTAAGCTCCCTGTATTTATATTGTGAATAAAATATAAGGTTGTATGTAAATCGTAGACCAATATAAAATCTACTTATCTGTCTTTAAATTTGAGAGATGATAATGCATTCAGTACCTTCACACTTTGGCCTTATTAAGCTCTAACAATGGTGAGGAAAACCCATGATAATTATTGGTTGATCCTTTTTAGTGGTTGGAGGAATCCCAATAATATATGTCCTCATGGGTGGATGTTCTCTAAATTATAACAATAATAACAGCTTGTTTTTTATCTTT

Coding sequence (CDS)

ATGTATGTGGCAGAGAAAACGAAAAGAATGAAGGCAGATTCAGATAATGCTCGCGTTTCTCCTGCTATGAGAAACCTCGAGACTTGTGCTAATATGAAGGATGAACAGGTGGCAGCCAGGGTGACGCCAGACGGGGCTGAGAAGGATGAATGGTTTATTGTAAAAGTGATACATTTTGATAAAGAGACAAAACTATTTGAAGTACTAGATGAGGAACCAGGCGATGAAGATGAAGGTGGAGGGCAAAGAAAATACAAATTACCAATGTCAGCCATCATTTCCTTTCCGAAACGAAATGATCCTTCCACCGTCCCTGAATTCCTACCTGGAAGACGAGTCTTAGCTGTTTATCCAGGAACAACCGCTCTTTATAGGGCAACAGTTGTGAATGGTCATCGCAAGAGGAAGACAGACGATTACTTGTTGGAATTCGACGATGACGAGGAAGACGGGTCGTCGACCTTGCCCCAAAGAACAGTACCCTTTCATAAAGTGGTGGCCTTGCCTGAAGGACTTCGCCAGTAA

Protein sequence

MYVAEKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ

Homology

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BLAST of Lsi03G013440 vs. ExPASy Swiss-Prot
Match: Q8RXY6 (SAGA-associated factor 29 homolog A OS=Arabidopsis thaliana OX=3702 GN=SGF29A PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.7e-67
Identity = 126/171 (73.68%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRN-LETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKET 64
           +K KRMK D+D  RVSP+MRN +E  A++K EQVAARVT + AEKDEWF+VKVIHFD+ET
Sbjct: 102 QKRKRMKVDTDVTRVSPSMRNQIEAYASLKGEQVAARVTAEDAEKDEWFVVKVIHFDRET 161

Query: 65  KLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTAL 124
           K  EVLDEEPGD++EGGGQR YKL MS I+ FPKRNDPS+  EF+PG+ VLAVYPGTTAL
Sbjct: 162 KEVEVLDEEPGDDEEGGGQRTYKLSMSCILPFPKRNDPSSTQEFIPGKHVLAVYPGTTAL 221

Query: 125 YRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           Y+ATV++  RKRK+D+YLLEFDDDEEDG+  LPQRTVPFHKVVALPEG RQ
Sbjct: 222 YKATVISTPRKRKSDEYLLEFDDDEEDGA--LPQRTVPFHKVVALPEGHRQ 270

[Close]

BLAST of Lsi03G013440 vs. ExPASy Swiss-Prot
Match: Q500Z7 (SAGA-associated factor 29 homolog B OS=Arabidopsis thaliana OX=3702 GN=SGF29B PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.2e-65
Identity = 125/171 (73.10%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRN-LETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKET 64
           +K KRMK DSD  R+SP+MRN +E  A++K EQVAARVT + A+KDEWF+VKVIHFD+ET
Sbjct: 105 QKRKRMKVDSDVIRLSPSMRNQIEAYASLKGEQVAARVTAESADKDEWFVVKVIHFDRET 164

Query: 65  KLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTAL 124
           K  EVLDEEPGD++EG GQR YKLPM  I+ FPKRNDPS   EF PG+ VLAVYPGTTAL
Sbjct: 165 KEVEVLDEEPGDDEEGSGQRTYKLPMLCILPFPKRNDPSNTQEFPPGKHVLAVYPGTTAL 224

Query: 125 YRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           Y+ATVV+  RKRK+D+YLLEFDDDEEDG+  LPQRTVPFHKVVALPEG RQ
Sbjct: 225 YKATVVSTPRKRKSDEYLLEFDDDEEDGA--LPQRTVPFHKVVALPEGHRQ 273

[Close]

BLAST of Lsi03G013440 vs. ExPASy Swiss-Prot
Match: Q96ES7 (SAGA-associated factor 29 OS=Homo sapiens OX=9606 GN=SGF29 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 35  EQVAARV-TPDGAEKDEWFIVKVIHFDKETKLFEVLDEEPGDEDEGGGQRKYKLPMSAII 94
           ++VAARV   DG E  +W + +V+ +   T  +EV      D+ +  G+ ++ L    +I
Sbjct: 160 DKVAARVKAVDGDE--QWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 219

Query: 95  SFPK-RNDPSTVPE--FLPGRRVLAVYPGTTALYRATVVNGHRKRKTDDYLLEFDDDE-E 154
             P+ + +P T PE  F   + VLA+YP TT  YRA +++   +R  DDY + F+D    
Sbjct: 220 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRA-LIHAPPQRPQDDYSVLFEDTSYA 279

Query: 155 DGSSTLPQRTVPFHKVVALPE 171
           DG S  P   V    VVA  E
Sbjct: 280 DGYS--PPLNVAQRYVVACKE 289

[Close]

BLAST of Lsi03G013440 vs. ExPASy Swiss-Prot
Match: Q5ZL38 (SAGA-associated factor 29 OS=Gallus gallus OX=9031 GN=SGF29 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 35  EQVAARV-TPDGAEKDEWFIVKVIHFDKETKLFEVLDEEPGDEDEGGGQRKYKLPMSAII 94
           ++VAARV   DG E  +W + +V+ +      +EV      D+ +  G+ ++ L    +I
Sbjct: 160 DKVAARVKAVDGDE--QWILAEVVSYSHAANKYEV------DDIDEEGKERHTLSRRRVI 219

Query: 95  SFPK-RNDPSTVPEFLPGRR--VLAVYPGTTALYRATVVNGHRKRKTDDYLLEFDDDE-E 154
             P+ + +P T PE L  R   VLA+YP TT  YRA +++   +R  DDY + F+D    
Sbjct: 220 PLPQWKANPETDPEALFQREQLVLALYPQTTCFYRA-LIHAPPQRPQDDYSVLFEDTSYA 279

Query: 155 DGSSTLPQRTVPFHKVVALPE 171
           DG S  P   V    VVA  E
Sbjct: 280 DGYS--PPLNVAQRYVVACKE 289

[Close]

BLAST of Lsi03G013440 vs. ExPASy Swiss-Prot
Match: Q9DA08 (SAGA-associated factor 29 OS=Mus musculus OX=10090 GN=Sgf29 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-07
Identity = 49/141 (34.75%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 35  EQVAARVTPDGAEKDE-WFIVKVIHFDKETKLFEVLDEEPGDEDEGGGQRKYKLPMSAII 94
           ++VAARV     E DE W + +V+ +   T  +EV      D+ +  G+ ++ L    II
Sbjct: 160 DKVAARV--KAVEGDEQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRII 219

Query: 95  SFPK-RNDPSTVPE--FLPGRRVLAVYPGTTALYRATVVNGHRKRKTDDYLLEFDDDE-E 154
             P+ + +P T PE  F   + VLA+YP TT  YRA +++   +R  DDY + F+D    
Sbjct: 220 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRA-LIHTPPQRPQDDYSVLFEDTSYA 279

Query: 155 DGSSTLPQRTVPFHKVVALPE 171
           DG S  P   V    VVA  E
Sbjct: 280 DGYS--PPLNVAQRYVVACKE 289

[Close]

BLAST of Lsi03G013440 vs. ExPASy TrEMBL
Match: A0A6J1JQN7 (uncharacterized protein LOC111486624 OS=Cucurbita maxima OX=3661 GN=LOC111486624 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 7.8e-89
Identity = 163/170 (95.88%), Postives = 166/170 (97.65%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKAD DNAR+SPAMRNLE CAN+KDEQVAARVTPDGAEKDEWFIVKV+HFDKETK
Sbjct: 97  EKAKRMKADPDNARLSPAMRNLEACANLKDEQVAARVTPDGAEKDEWFIVKVMHFDKETK 156

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAII FPKRNDPSTVPEFLPGRRVLAVYPGTTALY
Sbjct: 157 LFEVLDEEPGDEDEGGGQRKYKLPMSAIIPFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 216

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 217 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 266

[Close]

BLAST of Lsi03G013440 vs. ExPASy TrEMBL
Match: A0A1S3CML7 (uncharacterized protein LOC103502684 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502684 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 8   KRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFE 67
           KRMKADSDNAR SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFE
Sbjct: 97  KRMKADSDNARSSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFE 156

Query: 68  VLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRAT 127
           VLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRAT
Sbjct: 157 VLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRAT 216

Query: 128 VVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           VVN HRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 217 VVNSHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 263

[Close]

BLAST of Lsi03G013440 vs. ExPASy TrEMBL
Match: A0A5D3D5D4 (SAGA-associated factor 29-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00230 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 8   KRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFE 67
           KRMKADSDNAR SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFE
Sbjct: 97  KRMKADSDNARSSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETKLFE 156

Query: 68  VLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRAT 127
           VLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRAT
Sbjct: 157 VLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALYRAT 216

Query: 128 VVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           VVN HRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 217 VVNSHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 263

[Close]

BLAST of Lsi03G013440 vs. ExPASy TrEMBL
Match: A0A0A0LCH2 (SGF29 C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G840410 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKADSDNAR SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK
Sbjct: 164 EKQKRMKADSDNARSSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 223

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPST+PEFLPGRRVLAVYPGTTALY
Sbjct: 224 LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTLPEFLPGRRVLAVYPGTTALY 283

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVN HRKRKTDDYLLEFDDDEEDGSSTLPQR VPFHKVVALPEGLRQ
Sbjct: 284 RATVVNSHRKRKTDDYLLEFDDDEEDGSSTLPQRIVPFHKVVALPEGLRQ 333

[Close]

BLAST of Lsi03G013440 vs. ExPASy TrEMBL
Match: A0A6J1EK50 (uncharacterized protein LOC111435081 OS=Cucurbita moschata OX=3662 GN=LOC111435081 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 162/170 (95.29%), Postives = 166/170 (97.65%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKAD DNAR+SPAMRNLE CAN+KDEQVAARVTPDGAEKDEWFIVKV+HFDKETK
Sbjct: 97  EKAKRMKADPDNARLSPAMRNLEACANLKDEQVAARVTPDGAEKDEWFIVKVMHFDKETK 156

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAII FPKRNDPSTVPEFLPGRRVLAVYPGTTALY
Sbjct: 157 LFEVLDEEPGDEDEGGGQRKYKLPMSAIIPFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 216

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVNGHRKRKTDDY+LEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 217 RATVVNGHRKRKTDDYVLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 266

[Close]

BLAST of Lsi03G013440 vs. NCBI nr
Match: XP_038905992.1 (SAGA-associated factor 29 homolog A isoform X1 [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 2.9e-90
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKADSDNAR+SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK
Sbjct: 97  EKPKRMKADSDNARLSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 156

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY
Sbjct: 157 LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 216

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 217 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 266

[Close]

BLAST of Lsi03G013440 vs. NCBI nr
Match: XP_038905994.1 (SAGA-associated factor 29 homolog A isoform X3 [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 2.9e-90
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKADSDNAR+SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK
Sbjct: 65  EKPKRMKADSDNARLSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 124

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY
Sbjct: 125 LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 184

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 185 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 234

[Close]

BLAST of Lsi03G013440 vs. NCBI nr
Match: XP_022989563.1 (uncharacterized protein LOC111486624 [Cucurbita maxima] >XP_023530396.1 uncharacterized protein LOC111792984 [Cucurbita pepo subsp. pepo] >KAG6588935.1 SAGA-associated factor 29-like A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022704.1 SAGA-associated factor 29 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.3 bits (861), Expect = 1.6e-88
Identity = 163/170 (95.88%), Postives = 166/170 (97.65%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKAD DNAR+SPAMRNLE CAN+KDEQVAARVTPDGAEKDEWFIVKV+HFDKETK
Sbjct: 97  EKAKRMKADPDNARLSPAMRNLEACANLKDEQVAARVTPDGAEKDEWFIVKVMHFDKETK 156

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAII FPKRNDPSTVPEFLPGRRVLAVYPGTTALY
Sbjct: 157 LFEVLDEEPGDEDEGGGQRKYKLPMSAIIPFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 216

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ
Sbjct: 217 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 266

[Close]

BLAST of Lsi03G013440 vs. NCBI nr
Match: XP_004141115.1 (SAGA-associated factor 29 homolog A [Cucumis sativus] >XP_011652304.1 SAGA-associated factor 29 homolog A [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 3.6e-88
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKADSDNAR SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK
Sbjct: 97  EKQKRMKADSDNARSSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 156

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPST+PEFLPGRRVLAVYPGTTALY
Sbjct: 157 LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTLPEFLPGRRVLAVYPGTTALY 216

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVN HRKRKTDDYLLEFDDDEEDGSSTLPQR VPFHKVVALPEGLRQ
Sbjct: 217 RATVVNSHRKRKTDDYLLEFDDDEEDGSSTLPQRIVPFHKVVALPEGLRQ 266

[Close]

BLAST of Lsi03G013440 vs. NCBI nr
Match: KAE8651266.1 (hypothetical protein Csa_002708 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 3.6e-88
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRNLETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 64
           EK KRMKADSDNAR SPAMRNLE CANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK
Sbjct: 181 EKQKRMKADSDNARSSPAMRNLEACANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKETK 240

Query: 65  LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTALY 124
           LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPST+PEFLPGRRVLAVYPGTTALY
Sbjct: 241 LFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTLPEFLPGRRVLAVYPGTTALY 300

Query: 125 RATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           RATVVN HRKRKTDDYLLEFDDDEEDGSSTLPQR VPFHKVVALPEGLRQ
Sbjct: 301 RATVVNSHRKRKTDDYLLEFDDDEEDGSSTLPQRIVPFHKVVALPEGLRQ 350

[Close]

BLAST of Lsi03G013440 vs. TAIR 10
Match: AT3G27460.1 (SGF29 tudor-like domain )

HSP 1 Score: 255.4 bits (651), Expect = 3.4e-68
Identity = 126/171 (73.68%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRN-LETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKET 64
           +K KRMK D+D  RVSP+MRN +E  A++K EQVAARVT + AEKDEWF+VKVIHFD+ET
Sbjct: 102 QKRKRMKVDTDVTRVSPSMRNQIEAYASLKGEQVAARVTAEDAEKDEWFVVKVIHFDRET 161

Query: 65  KLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTAL 124
           K  EVLDEEPGD++EGGGQR YKL MS I+ FPKRNDPS+  EF+PG+ VLAVYPGTTAL
Sbjct: 162 KEVEVLDEEPGDDEEGGGQRTYKLSMSCILPFPKRNDPSSTQEFIPGKHVLAVYPGTTAL 221

Query: 125 YRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           Y+ATV++  RKRK+D+YLLEFDDDEEDG+  LPQRTVPFHKVVALPEG RQ
Sbjct: 222 YKATVISTPRKRKSDEYLLEFDDDEEDGA--LPQRTVPFHKVVALPEGHRQ 270

[Close]

BLAST of Lsi03G013440 vs. TAIR 10
Match: AT3G27460.2 (SGF29 tudor-like domain )

HSP 1 Score: 255.4 bits (651), Expect = 3.4e-68
Identity = 126/171 (73.68%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRN-LETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKET 64
           +K KRMK D+D  RVSP+MRN +E  A++K EQVAARVT + AEKDEWF+VKVIHFD+ET
Sbjct: 101 QKRKRMKVDTDVTRVSPSMRNQIEAYASLKGEQVAARVTAEDAEKDEWFVVKVIHFDRET 160

Query: 65  KLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTAL 124
           K  EVLDEEPGD++EGGGQR YKL MS I+ FPKRNDPS+  EF+PG+ VLAVYPGTTAL
Sbjct: 161 KEVEVLDEEPGDDEEGGGQRTYKLSMSCILPFPKRNDPSSTQEFIPGKHVLAVYPGTTAL 220

Query: 125 YRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           Y+ATV++  RKRK+D+YLLEFDDDEEDG+  LPQRTVPFHKVVALPEG RQ
Sbjct: 221 YKATVISTPRKRKSDEYLLEFDDDEEDGA--LPQRTVPFHKVVALPEGHRQ 269

[Close]

BLAST of Lsi03G013440 vs. TAIR 10
Match: AT5G40550.1 (SGF29 tudor-like domain )

HSP 1 Score: 250.8 bits (639), Expect = 8.3e-67
Identity = 125/171 (73.10%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRN-LETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKET 64
           +K KRMK DSD  R+SP+MRN +E  A++K EQVAARVT + A+KDEWF+VKVIHFD+ET
Sbjct: 105 QKRKRMKVDSDVIRLSPSMRNQIEAYASLKGEQVAARVTAESADKDEWFVVKVIHFDRET 164

Query: 65  KLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTAL 124
           K  EVLDEEPGD++EG GQR YKLPM  I+ FPKRNDPS   EF PG+ VLAVYPGTTAL
Sbjct: 165 KEVEVLDEEPGDDEEGSGQRTYKLPMLCILPFPKRNDPSNTQEFPPGKHVLAVYPGTTAL 224

Query: 125 YRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           Y+ATVV+  RKRK+D+YLLEFDDDEEDG+  LPQRTVPFHKVVALPEG RQ
Sbjct: 225 YKATVVSTPRKRKSDEYLLEFDDDEEDGA--LPQRTVPFHKVVALPEGHRQ 273

[Close]

BLAST of Lsi03G013440 vs. TAIR 10
Match: AT5G40550.2 (SGF29 tudor-like domain )

HSP 1 Score: 250.8 bits (639), Expect = 8.3e-67
Identity = 125/171 (73.10%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 5   EKTKRMKADSDNARVSPAMRN-LETCANMKDEQVAARVTPDGAEKDEWFIVKVIHFDKET 64
           +K KRMK DSD  R+SP+MRN +E  A++K EQVAARVT + A+KDEWF+VKVIHFD+ET
Sbjct: 102 QKRKRMKVDSDVIRLSPSMRNQIEAYASLKGEQVAARVTAESADKDEWFVVKVIHFDRET 161

Query: 65  KLFEVLDEEPGDEDEGGGQRKYKLPMSAIISFPKRNDPSTVPEFLPGRRVLAVYPGTTAL 124
           K  EVLDEEPGD++EG GQR YKLPM  I+ FPKRNDPS   EF PG+ VLAVYPGTTAL
Sbjct: 162 KEVEVLDEEPGDDEEGSGQRTYKLPMLCILPFPKRNDPSNTQEFPPGKHVLAVYPGTTAL 221

Query: 125 YRATVVNGHRKRKTDDYLLEFDDDEEDGSSTLPQRTVPFHKVVALPEGLRQ 175
           Y+ATVV+  RKRK+D+YLLEFDDDEEDG+  LPQRTVPFHKVVALPEG RQ
Sbjct: 222 YKATVVSTPRKRKSDEYLLEFDDDEEDGA--LPQRTVPFHKVVALPEGHRQ 270

The following BLAST results are available for this feature:

BLAST of Lsi03G013440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXY6	4.7e-67	73.68	SAGA-associated factor 29 homolog A OS=Arabidopsis thaliana OX=3702 GN=SGF29A PE...	[more]
Q500Z7	1.2e-65	73.10	SAGA-associated factor 29 homolog B OS=Arabidopsis thaliana OX=3702 GN=SGF29B PE...	[more]
Q96ES7	1.4e-07	34.04	SAGA-associated factor 29 OS=Homo sapiens OX=9606 GN=SGF29 PE=1 SV=1	[more]
Q5ZL38	4.2e-07	34.04	SAGA-associated factor 29 OS=Gallus gallus OX=9031 GN=SGF29 PE=2 SV=1	[more]
Q9DA08	4.2e-07	34.75	SAGA-associated factor 29 OS=Mus musculus OX=10090 GN=Sgf29 PE=2 SV=1	[more]

BLAST of Lsi03G013440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQN7	7.8e-89	95.88	uncharacterized protein LOC111486624 OS=Cucurbita maxima OX=3661 GN=LOC111486624...	[more]
A0A1S3CML7	1.7e-88	98.20	uncharacterized protein LOC103502684 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D5D4	1.7e-88	98.20	SAGA-associated factor 29-like protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LCH2	1.7e-88	96.47	SGF29 C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]
A0A6J1EK50	1.7e-88	95.29	uncharacterized protein LOC111435081 OS=Cucurbita moschata OX=3662 GN=LOC1114350...	[more]

BLAST of Lsi03G013440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905992.1	2.9e-90	98.24	SAGA-associated factor 29 homolog A isoform X1 [Benincasa hispida]	[more]
XP_038905994.1	2.9e-90	98.24	SAGA-associated factor 29 homolog A isoform X3 [Benincasa hispida]	[more]
XP_022989563.1	1.6e-88	95.88	uncharacterized protein LOC111486624 [Cucurbita maxima] >XP_023530396.1 uncharac...	[more]
XP_004141115.1	3.6e-88	96.47	SAGA-associated factor 29 homolog A [Cucumis sativus] >XP_011652304.1 SAGA-assoc...	[more]
KAE8651266.1	3.6e-88	96.47	hypothetical protein Csa_002708 [Cucumis sativus]	[more]

BLAST of Lsi03G013440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27460.1	3.4e-68	73.68	SGF29 tudor-like domain	[more]
AT3G27460.2	3.4e-68	73.68	SGF29 tudor-like domain	[more]
AT5G40550.1	8.3e-67	73.10	SGF29 tudor-like domain	[more]
AT5G40550.2	8.3e-67	73.10	SGF29 tudor-like domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.140		coord: 98..173 e-value: 1.3E-18 score: 68.8
None	No IPR available	GENE3D	2.30.30.140		coord: 35..97 e-value: 9.1E-12 score: 46.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR21539:SF0	SAGA-ASSOCIATED FACTOR 29	coord: 5..174
IPR010750	SGF29 tudor-like domain	PFAM	PF07039	DUF1325	coord: 34..169 e-value: 3.4E-31 score: 108.1
IPR010750	SGF29 tudor-like domain	PROSITE	PS51518	SGF29_C	coord: 27..174 score: 38.625664
IPR037802	SAGA-associated factor 29	PANTHER	PTHR21539	UNCHARACTERIZED	coord: 5..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G013440.1	Lsi03G013440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000124	SAGA complex