Lsi03G013150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G013150
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 23964767 .. 23967312 (+)
RNA-Seq ExpressionLsi03G013150
SyntenyLsi03G013150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCTGTAAAAAGTTTTTGATTTGCCATGCCTGTTAGATATCTTACTGATTTTGCTTCTAAGAGATTATCAATTGAGAAGGATGAGTCTAGAAAAATTCGAGAACAATTTATTTTATAGTGTATCTTCGCAACAAGTTAAAAACGACAGGGTGTTAAACATGTCATTAAAATTCCAAATTGATCTTGTTAATTTAGTTTCCAAAAACTAACAACTCTATAGGAAGAATGTTAAAAATAGAAAGAGATTGGTAATCTATACTATTTTATGCAAAAATAAATCATGCATGTGTTTGAGCCTTGATTAGCGAAATAATGTAAAATATGTTGGATTTTGTCTTAAAACTCATGGTTTATAAATATTTAACATTTTCTATTATGTATAAAGTCATTGAGGTTATCAATAAAGTTGTTATTGAATATGTGAATTATTGTTAATATAATCCTAAATCCAATAAACTAAGAACACATAGGTATAGTATTAGTACTTGATTTATATGTAGAGACATAAAGTGGATCAAGTTCAAGTAAATAATCAAAACGGTCTATAGTATATGGATTAGGTTAGGTACCTTATATTCGGGACACTATTGGATGTGGTTCACTTTGTATTTGATACAAACGATGTGATCTTGAATCGTTCATGTGGAGACATGTGAGTGGGGGCATTCTATGCAATGAGTTTGCATAAGAACGAACCACGAAATAGTTACTATTACTTTATAACGTTGTTTACTGTTAACACAGACTATTTCAACTAGGTGACCTAGGTAACTCAATCTTAATTCTGAGCTAACTATGAACTCCTGTTCATTCGGGATTATCCTTAGATATGCATGGTGAAAGTGGTCTGAGTTCGCCGATTCAATAAGCCCCCCATTTCAGGGGTAAGACCGGGTAAATAGCTGGGGACATAGTCCTGTAAGATGAAATTCACTCCTACCCGACTTTAGGGAGAGTAGAGAGGTTGTTCCCTTAAGTGTTGATTCCAGGTCTTGAACAAAGGGCTCCACCCTCTCATTTGGCCCGAGAGGGACTCGGTTTAGTGGTTGGGCCATAAACTAATTGTTCATTAGAGGGTAAGTGGTACTTAAGGATCAAGAGGTAATCTAGGGGTAAAACGATTAATCAATTAAACCTACAAGTATTCCATTCAAAATCTCACAAAACCATATGTACAATTCCAACCATCCTCTAAATTTGAGTTTTGGGTCTAGCCAGACATCAAACCTCGATCTCCAACACCAAAATCGTCAATTATAGGGCAAATATATGGAAATCTCAAGGATTTTGGCCAAAATTGACCAAAACTGAACTTAAATAACTCTAAACTCCCCACACCAACCTAAAAGATGGAGGAAACAATATATAGGAATCACAAGAGTGTCAAAACACTACTGGACAACATTGTGATGCTGCTAGGAAATGCCCTAACACCTTACAGCATCAACACATGTTGTACATCTTGTTTTCTCAACACATGTAGCATCGCAATATTGTGCTTCTGTCTTCAAGTGTTTAGTTGTAGCACCACCTAGCATTGCAACATTTCTTTTAGTGACATTTTGGTCATTTTGCATCCTTAAAGCCTCCGTTGCTAAAATAATAATAAGCTTCAAAAGACTCCTAATTAACACTGAAATTTTTGTAACGTTCTGAAATGCACATTATGATTGATTTCTTACCAATATGAACATAAACAAATTTAAGAACTAGTGCATATTTTTGCTATGATTAGGTTGACTATTATTTCAAAGTTCTAACAATACATGAAAATGAAATTTTAACCATTGATTCAAGAACATAATATATGTCCTTAACCGATTAATTTGCGGTATGTGGTGGATGGTAATTCAAAGTTAAGTGAGAAAACAATTCAAATTCAACATTCCATTTTCAAATAAGTAAGCTTGTAATTTATTATATTTGTTTATTGAAAAAAAAAGAAAAAGAAAAAAAAAACAGTGGGGTCAGTGTAAGTAGTAAACAGTAGCATTTTATGGTTTATAGAATAATAGAATGAACATGTCTTCAGTCTGCAAACGAGACTGATTTGAAAACTCCCATTTCTTTGTTTCTTTCTTCAATTTCAGGTAATCCAATCTTCCCCTTTTTCGCCACAGATTCTCGATTCTCCATTTATCTTCTTCATCTTATCACTCTTTATTATTCTACCCCTTCTTCCATTCTTTTTCTGCTGCTTCTGCAATACGCGCTTCTTCTATCGTTTCCTGCTTGGTTTTCGATTTGATTATTTGTGCTCGAATCCATTCTCACTGATTTCAAGGTTAGTCTCATACCTTGTTCTTTCTTCAAATCCATGCTTGCATTTTCAGATCGTGGAATTTGGTATTCTCTTTCTGATGTAATTGCTGTTGCTCTGCATCAGTGGTTTGGTTTTCTGTATGTTTTCACGGTACCCCAATTGAAAATGCTTTCGGGTTTTACTTTCTATTCCTTAGGAATTACACATTGGACGCTCGCATTTGCGTTGATTCTTACTTGTTGATGCGTGCGGCAAATGGATCTTGGATTTGGATATGA

mRNA sequence

ATGGACGCTGTAATCCAATCTTCCCCTTTTTCGCCACAGATTCTCGATTCTCCATTTATCTTCTTCATCTTATCACTCTTTATTATTCTACCCCTTCTTCCATTCTTTTTCTGCTGCTTCTGCAATACGCGCTTCTTCTATCGTTTCCTGCTTGGTTTTCGATTTGATTATTTGTGCTCGAATCCATTCTCACTGATTTCAAGGAATTACACATTGGACGCTCGCATTTGCGTTGATTCTTACTTGTTGATGCGTGCGGCAAATGGATCTTGGATTTGGATATGA

Coding sequence (CDS)

ATGGACGCTGTAATCCAATCTTCCCCTTTTTCGCCACAGATTCTCGATTCTCCATTTATCTTCTTCATCTTATCACTCTTTATTATTCTACCCCTTCTTCCATTCTTTTTCTGCTGCTTCTGCAATACGCGCTTCTTCTATCGTTTCCTGCTTGGTTTTCGATTTGATTATTTGTGCTCGAATCCATTCTCACTGATTTCAAGGAATTACACATTGGACGCTCGCATTTGCGTTGATTCTTACTTGTTGATGCGTGCGGCAAATGGATCTTGGATTTGGATATGA

Protein sequence

MDAVIQSSPFSPQILDSPFIFFILSLFIILPLLPFFFCCFCNTRFFYRFLLGFRFDYLCSNPFSLISRNYTLDARICVDSYLLMRAANGSWIWI
Homology
[Close]
BLAST of Lsi03G013150 vs. ExPASy TrEMBL
Match: A0A0A0LD69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842650 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 0 

Query: 9   PFSPQILDSPFI-FFILSLFI---ILPLLPFFFCCFCNTRFFYRFLLGFRFDYLCSNPFS 68
           PF PQ+LDSP I FFILSLFI    LPLLPF   CF NT FF+ FLLG RFD LCSNPFS
Sbjct: 40  PFLPQLLDSPLIFFFILSLFITQSFLPLLPFSLSCFYNTCFFFHFLLGSRFDCLCSNPFS 99

Query: 69  LISRNYTLDARICVDSYLLMRAANGSWI 93
           LISR+Y L+ARIC+DSY LM AANGS I
Sbjct: 100 LISRDYALNARICIDSYFLMLAANGSSI 127

[Close]
BLAST of Lsi03G013150 vs. NCBI nr
Match: KGN59743.1 (hypothetical protein Csa_001743 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21
Identity = 64/88 (72.73%), Postives = 69/88 (78.41%), Query Frame = 0 

Query: 9   PFSPQILDSPFI-FFILSLFI---ILPLLPFFFCCFCNTRFFYRFLLGFRFDYLCSNPFS 68
           PF PQ+LDSP I FFILSLFI    LPLLPF   CF NT FF+ FLLG RFD LCSNPFS
Sbjct: 40  PFLPQLLDSPLIFFFILSLFITQSFLPLLPFSLSCFYNTCFFFHFLLGSRFDCLCSNPFS 99

Query: 69  LISRNYTLDARICVDSYLLMRAANGSWI 93
           LISR+Y L+ARIC+DSY LM AANGS I
Sbjct: 100 LISRDYALNARICIDSYFLMLAANGSSI 127

The following BLAST results are available for this feature:
BLAST of Lsi03G013150 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G013150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD692.2e-2172.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842650 PE=4 SV=1[more]
BLAST of Lsi03G013150 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59743.14.5e-2172.73hypothetical protein Csa_001743 [Cucumis sativus][more]
BLAST of Lsi03G013150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G013150.1Lsi03G013150.1mRNA