Lsi03G011540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G011540
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 21837932 .. 21838467 (-)
RNA-Seq ExpressionLsi03G011540
SyntenyLsi03G011540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATAATGCACACCAAATTTTGTTTATTTTCTTATATTTTTTCAATATTGTTTTCTCTCTCTCTTGTTTTGCCAATCTCTATGGGTGTTGTTGTTCCTCTCTTACAATTACCAAACCTTTACCATCACTACTCCCACTCCCAACACCCAATACGAATCAAAGCGCACACGCTTTTACATTCATTCATTTTGTCATCGTCATCGCCCCTCTTCATCTTCCTCACTTTCCCCATCTCTCCGTCGGATTACTGGCCGTTGATCTCTGTTGACTCTACTCGGTACCCTTCAATTTCTTCTCTTCTTTCTGAATTCCCCTTAATTATGCTTTCTTTCTGATTTCTTGCTTTTTGGGTGTCCAAAGCTCAGTTTTTCCCAGCTGGGTTCTGGTGTTTTAGGCCCTTCAAGCTCTTGAACTCGTCGATTTTATATGATTTGGTGCGAATTCTTGTTATGGGTTTGTGGGTTGCTCTTAATTGGAACTGGGGATGCGTCGGTTTCTTGTTTCTGGACTTTTGGGGTTGGAGTGAAGCTGATTAG

mRNA sequence

AAATAATGCACACCAAATTTTGTTTATTTTCTTATATTTTTTCAATATTGTTTTCTCTCTCTCTTGTTTTGCCAATCTCTATGGGTGTTGTTGTTCCTCTCTTACAATTACCAAACCTTTACCATCACTACTCCCACTCCCAACACCCAATACGAATCAAAGCGCACACGCTTTTACATTCATTCATTTTGTCATCGTCATCGCCCCTCTTCATCTTCCTCACTTTCCCCATCTCTCCGTCGGATTACTGGCCGTTGATCTCTGTTGACTCTACTCGGCCCTTCAAGCTCTTGAACTCGTCGATTTTATATGATTTGGTGCGAATTCTTGTTATGGGTTTGTGGGTTGCTCTTAATTGGAACTGGGGATGCGTCGGTTTCTTGTTTCTGGACTTTTGGGGTTGGAGTGAAGCTGATTAG

Coding sequence (CDS)

ATGCACACCAAATTTTGTTTATTTTCTTATATTTTTTCAATATTGTTTTCTCTCTCTCTTGTTTTGCCAATCTCTATGGGTGTTGTTGTTCCTCTCTTACAATTACCAAACCTTTACCATCACTACTCCCACTCCCAACACCCAATACGAATCAAAGCGCACACGCTTTTACATTCATTCATTTTGTCATCGTCATCGCCCCTCTTCATCTTCCTCACTTTCCCCATCTCTCCGTCGGATTACTGGCCGTTGATCTCTGTTGACTCTACTCGGCCCTTCAAGCTCTTGAACTCGTCGATTTTATATGATTTGGTGCGAATTCTTGTTATGGGTTTGTGGGTTGCTCTTAATTGGAACTGGGGATGCGTCGGTTTCTTGTTTCTGGACTTTTGGGGTTGGAGTGAAGCTGATTAG

Protein sequence

MHTKFCLFSYIFSILFSLSLVLPISMGVVVPLLQLPNLYHHYSHSQHPIRIKAHTLLHSFILSSSSPLFIFLTFPISPSDYWPLISVDSTRPFKLLNSSILYDLVRILVMGLWVALNWNWGCVGFLFLDFWGWSEAD
Homology
[Close]
BLAST of Lsi03G011540 vs. ExPASy TrEMBL
Match: A0A0A0L9D4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G664540 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 26 MGVVVPLLQLPNLYHHYSHSQHPIRIKAHTLLHSFILSS--SSPLFIFLTFPISPSDYWP 85
          MGVVVPL+QLPNLYHHYSHSQHPIRIKAHTLLHSFI SS  SS L IFLTF ISP+D+ P
Sbjct: 1  MGVVVPLIQLPNLYHHYSHSQHPIRIKAHTLLHSFISSSSLSSSLLIFLTFLISPTDFRP 60

Query: 86 LIS 87
           IS
Sbjct: 61 FIS 63

[Close]
BLAST of Lsi03G011540 vs. NCBI nr
Match: KGN58530.1 (hypothetical protein Csa_000893 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 5.8e-17
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 26 MGVVVPLLQLPNLYHHYSHSQHPIRIKAHTLLHSFILSS--SSPLFIFLTFPISPSDYWP 85
          MGVVVPL+QLPNLYHHYSHSQHPIRIKAHTLLHSFI SS  SS L IFLTF ISP+D+ P
Sbjct: 1  MGVVVPLIQLPNLYHHYSHSQHPIRIKAHTLLHSFISSSSLSSSLLIFLTFLISPTDFRP 60

Query: 86 LIS 87
           IS
Sbjct: 61 FIS 63

The following BLAST results are available for this feature:
BLAST of Lsi03G011540 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G011540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9D42.8e-1782.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G664540 PE=4 SV=1[more]
BLAST of Lsi03G011540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58530.15.8e-1782.54hypothetical protein Csa_000893 [Cucumis sativus][more]
BLAST of Lsi03G011540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G011540.1Lsi03G011540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane