Lsi03G011380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G011380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr03: 21636326 .. 21637782 (+)
RNA-Seq Expression	Lsi03G011380
Synteny	Lsi03G011380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTCTGAAGAGGGTTAGGTTTAGTCACGGGAATCCCTTACAGGCGTTAGAATTCTTTAATTACACTGCTAGAAGAAGGGGATTTTATCACACTGCGTTTTCTGTTGATACAATGCTTTATATCCTAGGTAGAGGCCGCAAGTTTGAAAAAATTTGGGATGTTTTGGTTGATATTAAGCTTAAGGATCGGTCGTTAATCTCGCCGCGAACTGTCATGGTTGTTTTAGGAAGAATTGCCAAAGTGTGTTCTGTGAGGCAGACTGTAGAGTCTTTTAGGAAGTTCAAGAAGTTTGTTCCTGAGTTTGATGTCACTTGCTTTAATGCATTGTTGAGAACTCTGTGCCAGGAGAAGAGTATGATGGATGCGAGGAATGTTTACCACGGCATGAAGAGTAAGTTTAGGCCAAATTTGCAGACGTTTAACATATTATTGTCGGGTTGGAAGTCATCGGAAGAAGCTGAGGGATTCTTTGATGAGATGAGAGAAATGAGGGTTAAACCTGATGTTGTTTCATATAATTGTTTGGTTGATGTTTATTGTAAAAATAGGGAAATGGACAAGGCGTTTAAGGTGGTTGAGAAAATGAGGGAAGAGGATATACCTGCTGATGTGATTACGTACACCAGTATTATTGGGGGATTGGGATTGATTGGTCAACCCGACAAAGCGAGAAGTATTTTGAAAGAAATGAAGGAGTATGGATGTTACCCTGATGTTCCAGCTTATAATGCTGCAATACGAAATTATTGCATTGCGAAGAGGCTTCGTGAGGCTTTTGATTTGATGGATGAAATGGTGAATAAGGGTCTGAATCCAAATGCAACGACATATAACTTGTTCTTTAGGATTTTCTTCTGGTCCAATGACTTGCAAAGCTCGTGGAATTTATATCGTCGAATGATGGATACTGGGTGCTTGCCTAATACGCAATCCTGCTTGTTCCTAATGAGGTTGTTTAAGAAGCACGAAAAAGTAGACATGGCACTGGAGCTGTGGAATGACATGATACAAAGGGGTTTTGGGTCTTATATATTAGTATCCGAGGAGTTATTTGATCTTCTTTGTGATTTGGGAAAGTTGATAGAAGCTGAGAGCTGTTTTCTAGAGATGGTAGATAAGGGGCATAAGCCTAGTAACGTCTCGTTTAAAAGGATCAAAGTACTCATGGAACTGGTAAATAAGCATGAGGCTCTTCAGAACTTGTCAAAGAAAATGGATGGTTTTTTGGATCCACAAAAACGCCTTCCTGAAACGATGAGTTATTCAGTAGATCTGTCAAATTTGAATTCATTTCCATGTTAAATGGATTTATTTCACATGTCAAGGGTTTACATTTTTCATTCAGTGAAAACTGAAAACTGACAGACCATCAATGCATTAACTGCGTTTCAAGAGCAGAATACCGAGCAAGATCGTGGAGCTGGAAGTCGACCTATAATTTCTTGGGGCTAG

mRNA sequence

ATGGGGGAAATGGACAAGGCGTTTAAGGTGGTTGAGAAAATGAGGGAAGAGGATATACCTGCTGATGTGATTACGTACACCAGTATTATTGGGGGATTGGGATTGATTGGTCAACCCGACAAAGCGAGAAGTATTTTGAAAGAAATGAAGGAGTATGGATGTTACCCTGATGTTCCAGCTTATAATGCTGCAATACGAAATTATTGCATTGCGAAGAGGCTTCGTGAGGCTTTTGATTTGATGGATGAAATGAATACCGAGCAAGATCGTGGAGCTGGAAGTCGACCTATAATTTCTTGGGGCTAG

Coding sequence (CDS)

ATGGGGGAAATGGACAAGGCGTTTAAGGTGGTTGAGAAAATGAGGGAAGAGGATATACCTGCTGATGTGATTACGTACACCAGTATTATTGGGGGATTGGGATTGATTGGTCAACCCGACAAAGCGAGAAGTATTTTGAAAGAAATGAAGGAGTATGGATGTTACCCTGATGTTCCAGCTTATAATGCTGCAATACGAAATTATTGCATTGCGAAGAGGCTTCGTGAGGCTTTTGATTTGATGGATGAAATGAATACCGAGCAAGATCGTGGAGCTGGAAGTCGACCTATAATTTCTTGGGGCTAG

Protein sequence

MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYNAAIRNYCIAKRLREAFDLMDEMNTEQDRGAGSRPIISWG

Homology

[Close]

BLAST of Lsi03G011380 vs. ExPASy Swiss-Prot
Match: Q9FZ19 (Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana OX=3702 GN=At1g02420 PE=3 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 9.2e-31
Identity = 60/82 (73.17%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           E++KA+K+++KMREE+   DVITYT++IGGLGLIGQPDKAR +LKEMKEYGCYPDV AYN
Sbjct: 261 EIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYN 320

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIA+RL +A  L+DEM
Sbjct: 321 AAIRNFCIARRLGDADKLVDEM 342

[Close]

BLAST of Lsi03G011380 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-11
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 2   GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAY 61
           G+  +A K+ E+M    +  DV TY S+I GL + G+ D+A+ +L  M   GC PDV  Y
Sbjct: 258 GKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 317

Query: 62  NAAIRNYCIAKRLREAFDLMDEM 85
           N  I  +C +KR+ E   L  EM
Sbjct: 318 NTLINGFCKSKRVDEGTKLFREM 340

[Close]

BLAST of Lsi03G011380 vs. ExPASy Swiss-Prot
Match: Q9FIT7 (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-10
Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1   MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPA 60
           +G M KA  + ++M EE +  +VI Y  ++GG    G+ +KA+ +L EM   G +P+   
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 61  YNAAIRNYCIAKRLREAFDLMDEM 85
           Y   I  YC +  L EAF L DEM
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEM 723

[Close]

BLAST of Lsi03G011380 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-10
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 2   GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAY 61
           G+M+ A  V+E M+E+ +  DV++Y++++ G       D+A  + +EM E G  PD   Y
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488

Query: 62  NAAIRNYCIAKRLREAFDLMDEM 85
           ++ I+ +C  +R +EA DL +EM
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEM 511

[Close]

BLAST of Lsi03G011380 vs. ExPASy Swiss-Prot
Match: Q9LYZ9 (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX=3702 GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-10
Identity = 32/100 (32.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 2   GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAY 61
           G +D+A ++  +M E+    DV TYT+++ G    G+ + A SI +EM+  GC P++  +
Sbjct: 363 GMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTF 422

Query: 62  NAAIRNYCIAKRLREAFDLMDEMNTEQDRGAGSRP-IISW 101
           NA I+ Y    +  E   + DE+N       G  P I++W
Sbjct: 423 NAFIKMYGNRGKFTEMMKIFDEINV-----CGLSPDIVTW 457

[Close]

BLAST of Lsi03G011380 vs. ExPASy TrEMBL
Match: A0A6J1KCH6 (putative pentatricopeptide repeat-containing protein At1g02420 OS=Cucurbita maxima OX=3661 GN=LOC111493066 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.4e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVIEKMRDEDIAADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIAKRLREAFDLMDEM
Sbjct: 320 AAIRNFCIAKRLREAFDLMDEM 341

[Close]

BLAST of Lsi03G011380 vs. ExPASy TrEMBL
Match: A0A6J1GAM6 (putative pentatricopeptide repeat-containing protein At1g02420 OS=Cucurbita moschata OX=3662 GN=LOC111452441 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.4e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVIEKMRDEDIAADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIAKRLREAFDLMDEM
Sbjct: 320 AAIRNFCIAKRLREAFDLMDEM 341

[Close]

BLAST of Lsi03G011380 vs. ExPASy TrEMBL
Match: A0A5A7T8Z7 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00700 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.6e-36
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVVEKMRDEDIPADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           A IRN+CIAKRL EAFDL+DEM
Sbjct: 320 ATIRNFCIAKRLHEAFDLLDEM 341

[Close]

BLAST of Lsi03G011380 vs. ExPASy TrEMBL
Match: A0A1S3BI42 (putative pentatricopeptide repeat-containing protein At1g02420 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489902 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.6e-36
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVVEKMRDEDIPADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           A IRN+CIAKRL EAFDL+DEM
Sbjct: 320 ATIRNFCIAKRLHEAFDLLDEM 341

[Close]

BLAST of Lsi03G011380 vs. ExPASy TrEMBL
Match: A0A1S3BIE0 (putative pentatricopeptide repeat-containing protein At1g02420 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489902 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.6e-36
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 203 EMDKAFKVVEKMRDEDIPADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 262

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           A IRN+CIAKRL EAFDL+DEM
Sbjct: 263 ATIRNFCIAKRLHEAFDLLDEM 284

[Close]

BLAST of Lsi03G011380 vs. NCBI nr
Match: XP_023522207.1 (putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 4.1e-36
Identity = 76/85 (89.41%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVIEKMRDEDIAADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEMNTE 88
           AAIRN+CIAKRLREAFDLMDEM  +
Sbjct: 320 AAIRNFCIAKRLREAFDLMDEMTNK 344

[Close]

BLAST of Lsi03G011380 vs. NCBI nr
Match: KAG6606921.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036625.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 7.0e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVIEKMRDEDIAADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIAKRLREAFDLMDEM
Sbjct: 320 AAIRNFCIAKRLREAFDLMDEM 341

[Close]

BLAST of Lsi03G011380 vs. NCBI nr
Match: XP_022998430.1 (putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 7.0e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVIEKMRDEDIAADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIAKRLREAFDLMDEM
Sbjct: 320 AAIRNFCIAKRLREAFDLMDEM 341

[Close]

BLAST of Lsi03G011380 vs. NCBI nr
Match: XP_022948942.1 (putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita moschata])

HSP 1 Score: 160.6 bits (405), Expect = 7.0e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKV+EKMR+EDI ADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 260 EMDKAFKVIEKMRDEDIAADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 319

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIAKRLREAFDLMDEM
Sbjct: 320 AAIRNFCIAKRLREAFDLMDEM 341

[Close]

BLAST of Lsi03G011380 vs. NCBI nr
Match: XP_008447459.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 isoform X2 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 75/82 (91.46%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           EMDKAFKVVEKMR+EDIPADVITYTSIIGGLGLIGQPDKAR+ILKEMKEYGCYPDV AYN
Sbjct: 203 EMDKAFKVVEKMRDEDIPADVITYTSIIGGLGLIGQPDKARNILKEMKEYGCYPDVAAYN 262

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           A IRN+CIAKRL EAFDL+DEM
Sbjct: 263 ATIRNFCIAKRLHEAFDLLDEM 284

[Close]

BLAST of Lsi03G011380 vs. TAIR 10
Match: AT1G02420.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 6.6e-32
Identity = 60/82 (73.17%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           E++KA+K+++KMREE+   DVITYT++IGGLGLIGQPDKAR +LKEMKEYGCYPDV AYN
Sbjct: 261 EIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYN 320

Query: 63  AAIRNYCIAKRLREAFDLMDEM 85
           AAIRN+CIA+RL +A  L+DEM
Sbjct: 321 AAIRNFCIARRLGDADKLVDEM 342

[Close]

BLAST of Lsi03G011380 vs. TAIR 10
Match: AT1G62720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 2   GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAY 61
           G+  +A K+ E+M    +  DV TY S+I GL + G+ D+A+ +L  M   GC PDV  Y
Sbjct: 258 GKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 317

Query: 62  NAAIRNYCIAKRLREAFDLMDEM 85
           N  I  +C +KR+ E   L  EM
Sbjct: 318 NTLINGFCKSKRVDEGTKLFREM 340

[Close]

BLAST of Lsi03G011380 vs. TAIR 10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 32/84 (38.10%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 1   MGEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPA 60
           +G M KA  + ++M EE +  +VI Y  ++GG    G+ +KA+ +L EM   G +P+   
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVT 699

Query: 61  YNAAIRNYCIAKRLREAFDLMDEM 85
           Y   I  YC +  L EAF L DEM
Sbjct: 700 YCTIIDGYCKSGDLAEAFRLFDEM 723

[Close]

BLAST of Lsi03G011380 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 2   GEMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAY 61
           G+M+ A  V+E M+E+ +  DV++Y++++ G       D+A  + +EM E G  PD   Y
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488

Query: 62  NAAIRNYCIAKRLREAFDLMDEM 85
           ++ I+ +C  +R +EA DL +EM
Sbjct: 489 SSLIQGFCEQRRTKEACDLYEEM 511

[Close]

BLAST of Lsi03G011380 vs. TAIR 10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-11
Identity = 27/86 (31.40%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 3   EMDKAFKVVEKMREEDIPADVITYTSIIGGLGLIGQPDKARSILKEMKEYGCYPDVPAYN 62
           +++ A+KV++++    +  +++TYT+I+GG    G  + A+ +L+EM + G YPD   Y 
Sbjct: 206 DIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYT 265

Query: 63  AAIRNYCIAKRLREAFDLMDEMNTEQ 89
             +  YC   R  EA  +MD+M   +
Sbjct: 266 VLMDGYCKLGRFSEAATVMDDMEKNE 291

The following BLAST results are available for this feature:

BLAST of Lsi03G011380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ19	9.2e-31	73.17	Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis th...	[more]
Q9SI78	2.8e-11	39.76	Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX...	[more]
Q9FIT7	2.4e-10	38.10	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop...	[more]
Q9FIX3	3.1e-10	34.94	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
Q9LYZ9	6.9e-10	32.00	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lsi03G011380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCH6	3.4e-36	92.68	putative pentatricopeptide repeat-containing protein At1g02420 OS=Cucurbita maxi...	[more]
A0A6J1GAM6	3.4e-36	92.68	putative pentatricopeptide repeat-containing protein At1g02420 OS=Cucurbita mosc...	[more]
A0A5A7T8Z7	7.6e-36	91.46	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3BI42	7.6e-36	91.46	putative pentatricopeptide repeat-containing protein At1g02420 isoform X1 OS=Cuc...	[more]
A0A1S3BIE0	7.6e-36	91.46	putative pentatricopeptide repeat-containing protein At1g02420 isoform X2 OS=Cuc...	[more]

BLAST of Lsi03G011380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522207.1	4.1e-36	89.41	putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita pepo s...	[more]
KAG6606921.1	7.0e-36	92.68	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022998430.1	7.0e-36	92.68	putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita maxima...	[more]
XP_022948942.1	7.0e-36	92.68	putative pentatricopeptide repeat-containing protein At1g02420 [Cucurbita moscha...	[more]
XP_008447459.1	1.6e-35	91.46	PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 isofor...	[more]

BLAST of Lsi03G011380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02420.1	6.6e-32	73.17	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62720.1	2.0e-12	39.76	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G61990.1	1.7e-11	38.10	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39710.1	2.2e-11	34.94	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G16420.1	4.9e-11	31.40	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 60..84 e-value: 2.5E-5 score: 22.1 coord: 24..58 e-value: 2.2E-10 score: 38.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 9..67 e-value: 6.1E-11 score: 42.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 22..56 score: 12.090371
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 57..87 score: 8.911594
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..94 e-value: 7.0E-24 score: 86.8
None	No IPR available	PANTHER	PTHR47933:SF29	OS03G0208600 PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G011380.1	Lsi03G011380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding