Lsi03G011350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G011350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 21622348 .. 21623650 (-)
RNA-Seq ExpressionLsi03G011350
SyntenyLsi03G011350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTGAACAGGTCCGGCTTCGGAGAGAGCAGAGATGAAGGGCTGTATGTCGATGGCATCTCCGTCCGCCGTGGACGGTGGAGGTGGCTTGTAGTCCAAAGAGGGATCGTTGTAGATATCCCACCATTTGTTGACCAGCATTTTTATATCTTGTCTCTGCATATTTTCTTCCTTCCCTGTATACCTCCATGGCTTTGATCCCTACTTTTCCATCAACAAGTTTAGTAAACAACAATTTTACTATGATTTTTTAGAATTGTATTCATTTATTTATTAGGATTTATAACATAAATATGTAATCAGTCCTAAGCCCATTTTTATCAAGTTGTATTTGTAATAAAAAAAAAATTAAGAGATATTTTCAAATAAAACAAAATAAGCCAACTTATTTATAAATATAGCAAAATAGATTAATAGATAGAAATTATATCATCTATCACTATAGATTAGTATATTTTAAAATATTTCCTGCAGAAACTGTCATTTAAAATAATTACTCAAAAAATAACACTAATAAATAATAAATAATAATAACAATAACGATCGAGAATGATTCAAAATTTTACTTATCGAAAAAGAAAACAGTGGAGGAAGCCTAAACAACACCCCTATGTGGCAAAAGAAAATCAAATTGCATTATTTTATTTTATTTTTACTGTATAAGGAAAAAAAAGAACACTCGAATATATAAATGCAGCCTTAACTATACTGAATTATTGCTCATCAAAAAAATTCATTTAAATTTAGATAAAAAAAATATTTAGTTAGAAATTGTTACACCTCATTAAAAGATTATTTTTATCTCTGTCTTTAAATCAATAGTACAAACTAAACACTTACCGCAGCACAATAGTGAACAACTTTAACACGATCGAGAACGACATTCTCCGGGTGACGCCAAAGCATGGCTAATACCAAGTTGAAATCCAAGGGAATAGGCTTGTAAACATCTCTAAAGTAGATATTCAAAAAGTCCTAAAACAACAACAATCATCACTAAATTCAAAAGCTTAAATTAATTATACAAGGACAACGACAACGAGCAAAATTACCTGCTCGGCAAAAGGGGTGGGAGGCGTGACTTTGAGAGTATTCAGCAGATCGTGATACGTGGAAACACTCGGCTCGAAAACGAACATGCCAGCATTGAAGTAGAGCGGAGGACAGGGTTGACCGAGATCGTCGGGCCACCGAATCTTATCGGGGCATTGCTGGCAGTAGCCGATCTGATACTGAGGAGTGTGGCTCCATGTCTTTTCACAGAAGCAGTCCATAACGGCATAGAAATGGCCGTTTGGTAA

mRNA sequence

ATGAAGTCCGGCTTCGGAGAGAGCAGAGATGAAGGGCTGTATGTCGATGGCATCTCCGTCCGCCGTGGACGGTGGAGGTGGCTTGTAGTCCAAAGAGGGATCGTTTACAAACTAAACACTTACCGCAGCACAATAGTGAACAACTTTAACACGATCGAGAACGACATTCTCCGGGACAACGACAACGAGCAAAATTACCTGCTCGGCAAAAGGGGTGGGAGGCGTGACTTTGAGAGTATTCAGCAGATCGTGATACGTGGAAACACTCGGCTCGAAAACGAACATGCCAGCATTGAAGTAGAGCGGAGGACAGGGTTGACCGAGATCGTCGGGCCACCGAATCTTATCGGGGCATTGCTGGCAGTAGCCGATCTGATACTGAGGAGTGTGGCTCCATGTCTTTTCACAGAAGCAGTCCATAACGGCATAGAAATGGCCGTTTGGTAA

Coding sequence (CDS)

ATGAAGTCCGGCTTCGGAGAGAGCAGAGATGAAGGGCTGTATGTCGATGGCATCTCCGTCCGCCGTGGACGGTGGAGGTGGCTTGTAGTCCAAAGAGGGATCGTTTACAAACTAAACACTTACCGCAGCACAATAGTGAACAACTTTAACACGATCGAGAACGACATTCTCCGGGACAACGACAACGAGCAAAATTACCTGCTCGGCAAAAGGGGTGGGAGGCGTGACTTTGAGAGTATTCAGCAGATCGTGATACGTGGAAACACTCGGCTCGAAAACGAACATGCCAGCATTGAAGTAGAGCGGAGGACAGGGTTGACCGAGATCGTCGGGCCACCGAATCTTATCGGGGCATTGCTGGCAGTAGCCGATCTGATACTGAGGAGTGTGGCTCCATGTCTTTTCACAGAAGCAGTCCATAACGGCATAGAAATGGCCGTTTGGTAA

Protein sequence

MKSGFGESRDEGLYVDGISVRRGRWRWLVVQRGIVYKLNTYRSTIVNNFNTIENDILRDNDNEQNYLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVGPPNLIGALLAVADLILRSVAPCLFTEAVHNGIEMAVW
Homology
[Close]
BLAST of Lsi03G011350 vs. ExPASy TrEMBL
Match: A0A5J5B399 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029194 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 65  NYLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVGPPNLIGALLAVAD 124
           NYLL KRG R + E +Q+++I G T L ++HASIEVERR G  ++ GP +LI ALLAVA+
Sbjct: 88  NYLLSKRGRRGNLEGLQEVIIGGETGLVDKHASIEVERRPG-PQLGGPLDLIWALLAVAN 147

Query: 125 LILRSVAPCLFTEAVHNGIEMAVW 149
           L+L +V P   TEAVH+ IE+A+W
Sbjct: 148 LVLWAVTPRFLTEAVHHRIEIAIW 170

[Close]
BLAST of Lsi03G011350 vs. ExPASy TrEMBL
Match: C4J5Z3 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-06
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 53  ENDILRDNDNEQNYLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVG- 112
           +  +L   ++ Q  LL + GGR   E +++ +  G+  L +EHA +EVERR    ++ G 
Sbjct: 139 DRPVLIPEEHVQEVLLCEGGGRSHAEGVEERLGGGHAGLVHEHAGVEVERRR-RAQLGGR 198

Query: 113 --PPNLIGALLAVADLILRSVAPCLFTEAVHNGIEM 146
             P +L+ ALLAVAD +LR VAP L  EAVH+ +E+
Sbjct: 199 RWPRHLVRALLAVADPVLRGVAPRLLAEAVHHRVEV 233

[Close]
BLAST of Lsi03G011350 vs. ExPASy TrEMBL
Match: C4JC31 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 66  YLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVG---PPNLIGALLAV 125
           +LL + GGR   E +++ +  G+  L +EHA +EVERR    ++ G   P +L+ ALLAV
Sbjct: 29  HLLCEGGGRSHAEGVEERLGGGHAGLVHEHAGVEVERRR-RAQLGGRRWPRHLVRALLAV 88

Query: 126 ADLILRSVAPCLFTEAVHNGIEM 146
           AD +LR VAP L  EAVH+ +E+
Sbjct: 89  ADPVLRGVAPRLLAEAVHHRVEV 110

[Close]
BLAST of Lsi03G011350 vs. NCBI nr
Match: KAA8536716.1 (hypothetical protein F0562_029194 [Nyssa sinensis])

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-14
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 65  NYLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVGPPNLIGALLAVAD 124
           NYLL KRG R + E +Q+++I G T L ++HASIEVERR G  ++ GP +LI ALLAVA+
Sbjct: 88  NYLLSKRGRRGNLEGLQEVIIGGETGLVDKHASIEVERRPG-PQLGGPLDLIWALLAVAN 147

Query: 125 LILRSVAPCLFTEAVHNGIEMAVW 149
           L+L +V P   TEAVH+ IE+A+W
Sbjct: 148 LVLWAVTPRFLTEAVHHRIEIAIW 170

[Close]
BLAST of Lsi03G011350 vs. NCBI nr
Match: ACR36593.1 (unknown [Zea mays])

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-06
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 53  ENDILRDNDNEQNYLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVG- 112
           +  +L   ++ Q  LL + GGR   E +++ +  G+  L +EHA +EVERR    ++ G 
Sbjct: 139 DRPVLIPEEHVQEVLLCEGGGRSHAEGVEERLGGGHAGLVHEHAGVEVERRR-RAQLGGR 198

Query: 113 --PPNLIGALLAVADLILRSVAPCLFTEAVHNGIEM 146
             P +L+ ALLAVAD +LR VAP L  EAVH+ +E+
Sbjct: 199 RWPRHLVRALLAVADPVLRGVAPRLLAEAVHHRVEV 233

[Close]
BLAST of Lsi03G011350 vs. NCBI nr
Match: ACR38731.1 (unknown [Zea mays])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 66  YLLGKRGGRRDFESIQQIVIRGNTRLENEHASIEVERRTGLTEIVG---PPNLIGALLAV 125
           +LL + GGR   E +++ +  G+  L +EHA +EVERR    ++ G   P +L+ ALLAV
Sbjct: 29  HLLCEGGGRSHAEGVEERLGGGHAGLVHEHAGVEVERRR-RAQLGGRRWPRHLVRALLAV 88

Query: 126 ADLILRSVAPCLFTEAVHNGIEM 146
           AD +LR VAP L  EAVH+ +E+
Sbjct: 89  ADPVLRGVAPRLLAEAVHHRVEV 110

The following BLAST results are available for this feature:
BLAST of Lsi03G011350 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G011350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5J5B3991.1e-1455.95Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029194 PE=4 SV=1[more]
C4J5Z33.1e-0640.63Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
C4JC315.4e-0644.58Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
BLAST of Lsi03G011350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA8536716.12.2e-1455.95hypothetical protein F0562_029194 [Nyssa sinensis][more]
ACR36593.16.5e-0640.63unknown [Zea mays][more]
ACR38731.11.1e-0544.58unknown [Zea mays][more]
BLAST of Lsi03G011350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G011350.1Lsi03G011350.1mRNA