Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTAGGAAGAAGAACTAATCTTCGCTAGAAATTCACTGAAAGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAGTATGTTGATGAATTAAAGAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA
mRNA sequence
ATGGCGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA
Coding sequence (CDS)
ATGGCGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA
Protein sequence
MAKLNSVRKEITMFHIFFFVFHSTTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTRFAVKRKWVEFDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVSLDY
Homology
BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match:
A0A5A7U7C4 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00150 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFFVFHST TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53 QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT ++ + +K+ R +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190
BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match:
A0A0A0K424 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFFVFHST TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53 QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT ++ + +K+ R +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190
BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match:
A0A1S3BHA3 (uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFFVFHST TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53 QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT ++ + +K+ R +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190
BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match:
A0A6J1GKU6 (uncharacterized protein LOC111454873 OS=Cucurbita moschata OX=3662 GN=LOC111454873 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFF+FHST TKDFHG A RSWIP LCSLLF LGIIWA
Sbjct: 52 QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 111
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT L+ + +K+ R +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 112 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 171
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 172 KAVRKWSSRDFITLFFFSVS 189
BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match:
A0A6J1I0X4 (uncharacterized protein LOC111468053 OS=Cucurbita maxima OX=3661 GN=LOC111468053 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 4.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFF+FHST TKDFHG A RSWIP LCSLLF LGIIWA
Sbjct: 52 QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 111
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT L+ + +K+ R +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 112 VRYKTD--LEAHLDKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 171
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 172 KAVRKWSSRDFITLFFFSVS 189
BLAST of Lsi03G011330 vs. NCBI nr
Match:
XP_008447121.1 (PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo] >KAA0051100.1 putative transmembrane protein [Cucumis melo var. makuwa] >TYK02689.1 putative transmembrane protein [Cucumis melo var. makuwa])
HSP 1 Score: 158.7 bits (400), Expect = 3.4e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFFVFHST TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53 QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT ++ + +K+ R +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190
BLAST of Lsi03G011330 vs. NCBI nr
Match:
XP_004139828.2 (uncharacterized protein LOC101213346 [Cucumis sativus] >KGN44273.1 hypothetical protein Csa_016839 [Cucumis sativus])
HSP 1 Score: 158.7 bits (400), Expect = 3.4e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFFVFHST TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53 QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT ++ + +K+ R +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190
BLAST of Lsi03G011330 vs. NCBI nr
Match:
KAG7012062.1 (hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFF+FHST TKDFHG A RSWIP LCSLLF LGIIWA
Sbjct: 42 QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 101
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT L+ + +K+ R +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 102 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 161
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 162 KAVRKWSSRDFITLFFFSVS 179
BLAST of Lsi03G011330 vs. NCBI nr
Match:
XP_023553637.1 (uncharacterized protein LOC111811128 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFF+FHST TKDFHG A RSWIP LCSLLF LGIIWA
Sbjct: 143 QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 202
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT L+ + +K+ R +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 203 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 262
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 263 KAVRKWSSRDFITLFFFSVS 280
BLAST of Lsi03G011330 vs. NCBI nr
Match:
XP_022952110.1 (uncharacterized protein LOC111454873 [Cucurbita moschata] >KAG6572462.1 hypothetical protein SDJN03_29190, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 3 KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
+++SVRKEITM HIFFF+FHST TKDFHG A RSWIP LCSLLF LGIIWA
Sbjct: 52 QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 111
Query: 63 VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
VRYKT L+ + +K+ R +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 112 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 171
Query: 123 KDVRKWSSRDFITLFFFSVS 127
K VRKWSSRDFITLFFFSVS
Sbjct: 172 KAVRKWSSRDFITLFFFSVS 189
BLAST of Lsi03G011330 vs. TAIR 10
Match:
AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 128.6 bits (322), Expect = 3.5e-30
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 0
Query: 2 AKLNSVRKEITMFHIFFFVFH------------STTKDFHGAAGKRSWIPLLCSLLFYLG 61
++++SVR+EIT +IFFF+FH S++ +A KRSWIP LC+LL LG
Sbjct: 52 SQIDSVRREITQLYIFFFLFHSISLLLLFHASSSSSSSASSSACKRSWIPSLCALLSSLG 111
Query: 62 IIWAVRYKTR---RMLKPIWRSCWKGK--KKTRFAVKRKWVEFDLLKEVDALRRAKSPRV 121
IIWAVRYK+ + K + R K +K +K+K +EFDLLKEVDALRRAKS RV
Sbjct: 112 IIWAVRYKSEVESHLEKLLEREKEDAKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRV 171
Query: 122 EAKDVRKWSSRDFITLFFFSVS 127
E+K V+KWS+RDF+TLFFFSVS
Sbjct: 172 ESKPVKKWSARDFVTLFFFSVS 193
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U7C4 | 1.6e-35 | 65.71 | Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A0A0K424 | 1.6e-35 | 65.71 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1 | [more] |
A0A1S3BHA3 | 1.6e-35 | 65.71 | uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=... | [more] |
A0A6J1GKU6 | 2.8e-35 | 65.71 | uncharacterized protein LOC111454873 OS=Cucurbita moschata OX=3662 GN=LOC1114548... | [more] |
A0A6J1I0X4 | 4.8e-35 | 65.71 | uncharacterized protein LOC111468053 OS=Cucurbita maxima OX=3661 GN=LOC111468053... | [more] |
Match Name | E-value | Identity | Description | |
XP_008447121.1 | 3.4e-35 | 65.71 | PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo] >KAA0051100.1 put... | [more] |
XP_004139828.2 | 3.4e-35 | 65.71 | uncharacterized protein LOC101213346 [Cucumis sativus] >KGN44273.1 hypothetical ... | [more] |
KAG7012062.1 | 5.8e-35 | 65.71 | hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023553637.1 | 5.8e-35 | 65.71 | uncharacterized protein LOC111811128 [Cucurbita pepo subsp. pepo] | [more] |
XP_022952110.1 | 5.8e-35 | 65.71 | uncharacterized protein LOC111454873 [Cucurbita moschata] >KAG6572462.1 hypothet... | [more] |
Match Name | E-value | Identity | Description | |
AT3G12870.1 | 3.5e-30 | 52.82 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |