Lsi03G011330 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G011330
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Locationchr03: 21617226 .. 21617675 (-)
RNA-Seq ExpressionLsi03G011330
SyntenyLsi03G011330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTAGGAAGAAGAACTAATCTTCGCTAGAAATTCACTGAAAGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAGTATGTTGATGAATTAAAGAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA

mRNA sequence

ATGGCGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA

Coding sequence (CDS)

ATGGCGAAACTCAACTCTGTGAGAAAAGAAATCACAATGTTTCACATCTTCTTCTTCGTCTTCCACTCCACGACCAAGGATTTCCATGGCGCAGCTGGTAAAAGATCATGGATTCCCTTGCTCTGTTCTCTCTTGTTTTATCTGGGTATCATTTGGGCGGTGAGATACAAGACAAGACGAATGTTGAAGCCCATTTGGAGAAGCTGCTGGAAAGGGAAAAAGAAGACAAGATTTGCTGTCAAAAGGAAATGGGTTGAATTTGATTTGCTAAAGGAGGTGGATGCGCTAAGGAGGGCAAAGAGTCCGAGGGTTGAAGCTAAGGATGTGAGAAAATGGTCTTCAAGGGATTTCATTACTCTATTTTTCTTCTCTGTTTCTTTGGATTATTAA

Protein sequence

MAKLNSVRKEITMFHIFFFVFHSTTKDFHGAAGKRSWIPLLCSLLFYLGIIWAVRYKTRRMLKPIWRSCWKGKKKTRFAVKRKWVEFDLLKEVDALRRAKSPRVEAKDVRKWSSRDFITLFFFSVSLDY
Homology
BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match: A0A5A7U7C4 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00150 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53  QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   ++       + +K+ R         +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190

BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match: A0A0A0K424 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53  QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   ++       + +K+ R         +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190

BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match: A0A1S3BHA3 (uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53  QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   ++       + +K+ R         +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190

BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match: A0A6J1GKU6 (uncharacterized protein LOC111454873 OS=Cucurbita moschata OX=3662 GN=LOC111454873 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWA
Sbjct: 52  QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 111

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   L+       + +K+ R         +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 112 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 171

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 172 KAVRKWSSRDFITLFFFSVS 189

BLAST of Lsi03G011330 vs. ExPASy TrEMBL
Match: A0A6J1I0X4 (uncharacterized protein LOC111468053 OS=Cucurbita maxima OX=3661 GN=LOC111468053 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWA
Sbjct: 52  QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 111

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   L+       + +K+ R         +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 112 VRYKTD--LEAHLDKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 171

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 172 KAVRKWSSRDFITLFFFSVS 189

BLAST of Lsi03G011330 vs. NCBI nr
Match: XP_008447121.1 (PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo] >KAA0051100.1 putative transmembrane protein [Cucumis melo var. makuwa] >TYK02689.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 3.4e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53  QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   ++       + +K+ R         +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190

BLAST of Lsi03G011330 vs. NCBI nr
Match: XP_004139828.2 (uncharacterized protein LOC101213346 [Cucumis sativus] >KGN44273.1 hypothetical protein Csa_016839 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 3.4e-35
Identity = 92/140 (65.71%), Postives = 102/140 (72.86%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFFVFHST         TKDFHG A KRSWIP LCSLLF LGIIWA
Sbjct: 53  QIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGVACKRSWIPSLCSLLFSLGIIWA 112

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   ++       + +K+ R         +KRK +EFDLLKEVDALRRAKS RVEA
Sbjct: 113 VRYKTD--VEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEA 172

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 173 KAVRKWSSRDFITLFFFSVS 190

BLAST of Lsi03G011330 vs. NCBI nr
Match: KAG7012062.1 (hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWA
Sbjct: 42  QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 101

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   L+       + +K+ R         +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 102 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 161

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 162 KAVRKWSSRDFITLFFFSVS 179

BLAST of Lsi03G011330 vs. NCBI nr
Match: XP_023553637.1 (uncharacterized protein LOC111811128 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWA
Sbjct: 143 QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 202

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   L+       + +K+ R         +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 203 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 262

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 263 KAVRKWSSRDFITLFFFSVS 280

BLAST of Lsi03G011330 vs. NCBI nr
Match: XP_022952110.1 (uncharacterized protein LOC111454873 [Cucurbita moschata] >KAG6572462.1 hypothetical protein SDJN03_29190, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35
Identity = 92/140 (65.71%), Postives = 101/140 (72.14%), Query Frame = 0

Query: 3   KLNSVRKEITMFHIFFFVFHST---------TKDFHGAAGKRSWIPLLCSLLFYLGIIWA 62
           +++SVRKEITM HIFFF+FHST         TKDFHG A  RSWIP LCSLLF LGIIWA
Sbjct: 52  QIDSVRKEITMLHIFFFIFHSTAVLLLFNASTKDFHGVACNRSWIPSLCSLLFSLGIIWA 111

Query: 63  VRYKTRRMLKPIWRSCWKGKKKTR-------FAVKRKWVEFDLLKEVDALRRAKSPRVEA 122
           VRYKT   L+       + +K+ R         +KRK VEFDLLKEVDALRRAKS RVEA
Sbjct: 112 VRYKTD--LEAHLEKLLEREKEDRNLLGKCVDELKRKGVEFDLLKEVDALRRAKSLRVEA 171

Query: 123 KDVRKWSSRDFITLFFFSVS 127
           K VRKWSSRDFITLFFFSVS
Sbjct: 172 KAVRKWSSRDFITLFFFSVS 189

BLAST of Lsi03G011330 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 3.5e-30
Identity = 75/142 (52.82%), Postives = 97/142 (68.31%), Query Frame = 0

Query: 2   AKLNSVRKEITMFHIFFFVFH------------STTKDFHGAAGKRSWIPLLCSLLFYLG 61
           ++++SVR+EIT  +IFFF+FH            S++     +A KRSWIP LC+LL  LG
Sbjct: 52  SQIDSVRREITQLYIFFFLFHSISLLLLFHASSSSSSSASSSACKRSWIPSLCALLSSLG 111

Query: 62  IIWAVRYKTR---RMLKPIWRSCWKGK--KKTRFAVKRKWVEFDLLKEVDALRRAKSPRV 121
           IIWAVRYK+     + K + R     K  +K    +K+K +EFDLLKEVDALRRAKS RV
Sbjct: 112 IIWAVRYKSEVESHLEKLLEREKEDAKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRV 171

Query: 122 EAKDVRKWSSRDFITLFFFSVS 127
           E+K V+KWS+RDF+TLFFFSVS
Sbjct: 172 ESKPVKKWSARDFVTLFFFSVS 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U7C41.6e-3565.71Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0K4241.6e-3565.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237880 PE=4 SV=1[more]
A0A1S3BHA31.6e-3565.71uncharacterized protein LOC103489644 OS=Cucumis melo OX=3656 GN=LOC103489644 PE=... [more]
A0A6J1GKU62.8e-3565.71uncharacterized protein LOC111454873 OS=Cucurbita moschata OX=3662 GN=LOC1114548... [more]
A0A6J1I0X44.8e-3565.71uncharacterized protein LOC111468053 OS=Cucurbita maxima OX=3661 GN=LOC111468053... [more]
Match NameE-valueIdentityDescription
XP_008447121.13.4e-3565.71PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo] >KAA0051100.1 put... [more]
XP_004139828.23.4e-3565.71uncharacterized protein LOC101213346 [Cucumis sativus] >KGN44273.1 hypothetical ... [more]
KAG7012062.15.8e-3565.71hypothetical protein SDJN02_26970, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023553637.15.8e-3565.71uncharacterized protein LOC111811128 [Cucurbita pepo subsp. pepo][more]
XP_022952110.15.8e-3565.71uncharacterized protein LOC111454873 [Cucurbita moschata] >KAG6572462.1 hypothet... [more]
Match NameE-valueIdentityDescription
AT3G12870.13.5e-3052.82unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33287:SF10BNAA01G30280D PROTEINcoord: 3..126
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 3..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G011330.1Lsi03G011330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane