Lsi03G009760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G009760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell;
Location	chr03: 18856127 .. 18856703 (-)
RNA-Seq Expression	Lsi03G009760
Synteny	Lsi03G009760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACGCTATGAATTTGTCTTCTGCTGTTGGAACACTTGAGAACCCTCGAATGGAAAAAGTTCATCGATTCAATCATCATATTCACAACCAATCAGTAAGCTGAATCGCGAGAGAGAATTTTCATCCGAGTTATAGATTCAGGGAAATTCATTGGAGCTGAGGAAATCTGTGGAAATGGAGAGAGACGGAGAGGGAGGACCGGCAGCGGCGGCGGCGGCGTCGTCGTCTTGTCAGATCACCAGACCTAGTAGGAGGGTGGACCCTTTTCTTGTCACTTGCAGGTTTTTCAGTGTTATAACAGCTCTCACTGCTATTCTCTGCATTGTTTCCAATGTTATCTCTGCGATTCGGTCCTTTAGGAACAAATCCGATGTACTAACTCTGTTTCCGTTGCTTCTTCGTTAAGTTATCTTTGAAAAATCGAATGCGGTATCATGCGTTTGTGTAAATTTTTTGCAGATATTCGATGGTATATTTCGGTGTTATGCAGTTGTGGTCGCATTCTTCGTGGTTCTTGCTGAGACGGAATGGGAATTTATTTTCAAGAACTGGAAGGTTTTTGCGTTTGAACCCTAA

mRNA sequence

TTAACGCTATGAATTTGTCTTCTGCTGTTGGAACACTTGAGAACCCTCGAATGGAAAAAGTTCATCGATTCAATCATCATATTCACAACCAATCAGTAAGCTGAATCGCGAGAGAGAATTTTCATCCGAGTTATAGATTCAGGGAAATTCATTGGAGCTGAGGAAATCTGTGGAAATGGAGAGAGACGGAGAGGGAGGACCGGCAGCGGCGGCGGCGGCGTCGTCGTCTTGTCAGATCACCAGACCTAGTAGGAGGGTGGACCCTTTTCTTGTCACTTGCAGGTTTTTCAGTGTTATAACAGCTCTCACTGCTATTCTCTGCATTGTTTCCAATGTTATCTCTGCGATTCGGTCCTTTAGGAACAAATCCGATATATTCGATGGTATATTTCGGTGTTATGCAGTTGTGGTCGCATTCTTCGTGGTTCTTGCTGAGACGGAATGGGAATTTATTTTCAAGAACTGGAAGGTTTTTGCGTTTGAACCCTAA

Coding sequence (CDS)

ATGGAGAGAGACGGAGAGGGAGGACCGGCAGCGGCGGCGGCGGCGTCGTCGTCTTGTCAGATCACCAGACCTAGTAGGAGGGTGGACCCTTTTCTTGTCACTTGCAGGTTTTTCAGTGTTATAACAGCTCTCACTGCTATTCTCTGCATTGTTTCCAATGTTATCTCTGCGATTCGGTCCTTTAGGAACAAATCCGATATATTCGATGGTATATTTCGGTGTTATGCAGTTGTGGTCGCATTCTTCGTGGTTCTTGCTGAGACGGAATGGGAATTTATTTTCAAGAACTGGAAGGTTTTTGCGTTTGAACCCTAA

Protein sequence

MERDGEGGPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISAIRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAFEP

Homology

[Close]

BLAST of Lsi03G009760 vs. ExPASy TrEMBL
Match: A0A0A0KYH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182250 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MERDGEGGPAAAAAA----SSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVIS 60
           MER+GEG PA A AA    SSS QITRP R VDP LVTCRFFSVITALTAILCIVSNVIS
Sbjct: 1   MERNGEGAPALAPAASSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVIS 60

Query: 61  AIRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           AIRSF+N+SDIFDGIFRCYAVV+AFF VLAETEWEFIFKNWKV  +
Sbjct: 61  AIRSFKNQSDIFDGIFRCYAVVIAFFAVLAETEWEFIFKNWKVLEY 106

[Close]

BLAST of Lsi03G009760 vs. ExPASy TrEMBL
Match: A0A1S3BY74 (uncharacterized protein LOC103494861 OS=Cucumis melo OX=3656 GN=LOC103494861 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MERDGEGGPAA--AAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISAI 60
           MER+GEG PAA  ++++SSS QITRP R VDP LVTCRFFSVITALTAILCIVSNVISAI
Sbjct: 1   MERNGEGAPAASSSSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVISAI 60

Query: 61  RSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           RSF+N+SDIFDGIFRCYAVV+ FFVVLAETEWEFIFKNWKV  +
Sbjct: 61  RSFKNQSDIFDGIFRCYAVVITFFVVLAETEWEFIFKNWKVLEY 104

[Close]

BLAST of Lsi03G009760 vs. ExPASy TrEMBL
Match: A0A6J1E3M8 (uncharacterized protein LOC111430498 OS=Cucurbita moschata OX=3662 GN=LOC111430498 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MERDGEG---GPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISA 60
           MER GEG   G  AAA A+SS Q +RP RRVDP LVTCRFFSV+TALTAILCIVSNVI+A
Sbjct: 1   MERGGEGAAAGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60

Query: 61  IRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           IRSF+NKSDIFDGIFRCYAVV+AFFVVLAETEWEFI KNWKV  +
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEY 105

[Close]

BLAST of Lsi03G009760 vs. ExPASy TrEMBL
Match: A0A6J1J849 (uncharacterized protein LOC111482612 OS=Cucurbita maxima OX=3661 GN=LOC111482612 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.7e-36
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MERDGEG---GPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISA 60
           MER GEG   G  AAA A+SS Q  RP RRVDP LVTCRFFSV+TALTAILCIVSNVI+A
Sbjct: 1   MERGGEGAAAGTTAAATAASSSQTIRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60

Query: 61  IRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           IRSF+NKSDIFDGIFRCYAVV+AFFVVLAETEWEFI KNWKV  +
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEY 105

[Close]

BLAST of Lsi03G009760 vs. ExPASy TrEMBL
Match: A0A6J1D697 (uncharacterized protein LOC111017704 OS=Momordica charantia OX=3673 GN=LOC111017704 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-30
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MERDGEGG-------PAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSN 60
           M +DGE         PAA++++SSS   TR  RRVDP LVTCRFFSV+TALTAILCIV N
Sbjct: 1   MPKDGEEEVAGITPVPAASSSSSSSSHTTRHGRRVDPLLVTCRFFSVLTALTAILCIVVN 60

Query: 61  VISAIRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           VISA+RSF++K+DIFDGIFRCYAV++A FVVLAETEWEFI K WKV  +
Sbjct: 61  VISAVRSFKDKADIFDGIFRCYAVLIASFVVLAETEWEFIIKFWKVLEY 109

[Close]

BLAST of Lsi03G009760 vs. NCBI nr
Match: XP_008454462.1 (PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MERDGEGGPAA--AAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISAI 60
           MER+GEG PAA  ++++SSS QITRP R VDP LVTCRFFSVITALTAILCIVSNVISAI
Sbjct: 1   MERNGEGAPAASSSSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVISAI 60

Query: 61  RSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           RSF+N+SDIFDGIFRCYAVV+ FFVVLAETEWEFIFKNWKV  +
Sbjct: 61  RSFKNQSDIFDGIFRCYAVVITFFVVLAETEWEFIFKNWKVLEY 104

[Close]

BLAST of Lsi03G009760 vs. NCBI nr
Match: XP_004147506.1 (uncharacterized protein LOC101214901 [Cucumis sativus] >KGN53894.1 hypothetical protein Csa_011853 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MERDGEGGPAAAAAA----SSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVIS 60
           MER+GEG PA A AA    SSS QITRP R VDP LVTCRFFSVITALTAILCIVSNVIS
Sbjct: 1   MERNGEGAPALAPAASSSSSSSSQITRPRRSVDPLLVTCRFFSVITALTAILCIVSNVIS 60

Query: 61  AIRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           AIRSF+N+SDIFDGIFRCYAVV+AFF VLAETEWEFIFKNWKV  +
Sbjct: 61  AIRSFKNQSDIFDGIFRCYAVVIAFFAVLAETEWEFIFKNWKVLEY 106

[Close]

BLAST of Lsi03G009760 vs. NCBI nr
Match: XP_038905258.1 (uncharacterized protein LOC120091338 isoform X1 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 85/102 (83.33%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MERDGEGGPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISAIRS 60
           MERDGEG P  AAAASSS Q  RP RRVDP LVTCRFFSV+TALTAILCIVSNVISAIRS
Sbjct: 1   MERDGEGAP--AAAASSSSQTIRPRRRVDPLLVTCRFFSVLTALTAILCIVSNVISAIRS 60

Query: 61  FRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           F+NKSD+FDGIFRCYAVV+A FVVLAETEWEFI KNWKV  +
Sbjct: 61  FKNKSDLFDGIFRCYAVVIACFVVLAETEWEFILKNWKVLEY 100

[Close]

BLAST of Lsi03G009760 vs. NCBI nr
Match: XP_022922529.1 (uncharacterized protein LOC111430498 [Cucurbita moschata] >KAG6576880.1 hypothetical protein SDJN03_24454, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014903.1 hypothetical protein SDJN02_22534 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MERDGEG---GPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISA 60
           MER GEG   G  AAA A+SS Q +RP RRVDP LVTCRFFSV+TALTAILCIVSNVI+A
Sbjct: 1   MERGGEGAAAGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVIAA 60

Query: 61  IRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           IRSF+NKSDIFDGIFRCYAVV+AFFVVLAETEWEFI KNWKV  +
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEY 105

[Close]

BLAST of Lsi03G009760 vs. NCBI nr
Match: XP_023552581.1 (uncharacterized protein LOC111810200 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 4.2e-36
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MERDGEG---GPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISA 60
           MER GEG   G  AAA A+SS Q +RP RRVDP LVTCRFFSV+TALTAILCIVSNV++A
Sbjct: 1   MERGGEGAATGTTAAATAASSSQTSRPGRRVDPLLVTCRFFSVVTALTAILCIVSNVVAA 60

Query: 61  IRSFRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           IRSF+NKSDIFDGIFRCYAVV+AFFVVLAETEWEFI KNWKV  +
Sbjct: 61  IRSFKNKSDIFDGIFRCYAVVIAFFVVLAETEWEFILKNWKVLEY 105

[Close]

BLAST of Lsi03G009760 vs. TAIR 10
Match: AT4G33625.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 4.4e-23
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MERDGEGGPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISAIRS 60
           M+R  E   + A  +S S ++ +   R DPFLV CR FS++T+L AILC+V NV++A+RS
Sbjct: 1   MDRTEEIEESPAGPSSGSAKL-KLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRS 60

Query: 61  FRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           FR+  D+FDGIFRCYAVV+A FVVL ETEW FI K  KV  +
Sbjct: 61  FRDSHDLFDGIFRCYAVVIACFVVLVETEWGFILKFSKVLEY 101

[Close]

BLAST of Lsi03G009760 vs. TAIR 10
Match: AT4G33625.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 4.4e-23
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MERDGEGGPAAAAAASSSCQITRPSRRVDPFLVTCRFFSVITALTAILCIVSNVISAIRS 60
           M+R  E   + A  +S S ++ +   R DPFLV CR FS++T+L AILC+V NV++A+RS
Sbjct: 1   MDRTEEIEESPAGPSSGSAKL-KLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRS 60

Query: 61  FRNKSDIFDGIFRCYAVVVAFFVVLAETEWEFIFKNWKVFAF 103
           FR+  D+FDGIFRCYAVV+A FVVL ETEW FI K  KV  +
Sbjct: 61  FRDSHDLFDGIFRCYAVVIACFVVLVETEWGFILKFSKVLEY 101

The following BLAST results are available for this feature:

BLAST of Lsi03G009760 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G009760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH6	1.9e-37	82.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182250 PE=4 SV=1	[more]
A0A1S3BY74	1.9e-37	81.73	uncharacterized protein LOC103494861 OS=Cucumis melo OX=3656 GN=LOC103494861 PE=...	[more]
A0A6J1E3M8	1.6e-36	80.00	uncharacterized protein LOC111430498 OS=Cucurbita moschata OX=3662 GN=LOC1114304...	[more]
A0A6J1J849	2.7e-36	80.00	uncharacterized protein LOC111482612 OS=Cucurbita maxima OX=3661 GN=LOC111482612...	[more]
A0A6J1D697	8.3e-30	67.89	uncharacterized protein LOC111017704 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Lsi03G009760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454462.1	3.8e-37	81.73	PREDICTED: uncharacterized protein LOC103494861 [Cucumis melo]	[more]
XP_004147506.1	3.8e-37	82.08	uncharacterized protein LOC101214901 [Cucumis sativus] >KGN53894.1 hypothetical ...	[more]
XP_038905258.1	1.5e-36	83.33	uncharacterized protein LOC120091338 isoform X1 [Benincasa hispida]	[more]
XP_022922529.1	3.2e-36	80.00	uncharacterized protein LOC111430498 [Cucurbita moschata] >KAG6576880.1 hypothet...	[more]
XP_023552581.1	4.2e-36	79.05	uncharacterized protein LOC111810200 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G009760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33625.1	4.4e-23	54.90	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G33625.2	4.4e-23	54.90	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34965	OS07G0118300 PROTEIN	coord: 11..102
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009760.1	Lsi03G009760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane