Lsi03G009570 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G009570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I assembly protein ycf3
Location	chr03: 18339696 .. 18340391 (-)
RNA-Seq Expression	Lsi03G009570
Synteny	Lsi03G009570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATACCTAGATACTTTATTCTATGGATAAAGGATTTAATTGATAGAAGAATTACCGTAAAGATCAATTAGTCAGGTTGTTGGCCAATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCAATTATGTAATAGGGTGGATCCCCTACGATATTGAGTAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATGAAAGTTTGAAACTTATATAATTAACCTCTTTTGCTTAACTCGAGAAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACACGCTATAGCACTTACTCCCGATAATTAG

mRNA sequence

ATGGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACACGCTATAGCACTTACTCCCGATAATTAG

Coding sequence (CDS)

ATGGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACACGCTATAGCACTTACTCCCGATAATTAG

Protein sequence

MDMVNFLKYGTAKELTVEPYEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN

Homology

[Close]

BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-12
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 39  RGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           RGEQAIRQGDSEIAEAWFNQAAEYWK AIALTP N
Sbjct: 120 RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGN 154

[Close]

BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: Q09MH7 (Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 39  RGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           RGEQA+RQGDSEIAEAWFNQAAEYWK AIALTP N
Sbjct: 119 RGEQAVRQGDSEIAEAWFNQAAEYWKQAIALTPGN 153

[Close]

BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: A4GG96 (Photosystem I assembly protein Ycf3 OS=Phaseolus vulgaris OX=3885 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 39  RGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           RGEQAIRQGDSE+AE+WFNQAAEYWK AIALTP N
Sbjct: 119 RGEQAIRQGDSEVAESWFNQAAEYWKQAIALTPGN 153

[Close]

BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: Q2PMU4 (Photosystem I assembly protein Ycf3 OS=Glycine max OX=3847 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 39  RGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           RGEQAIRQGDSE+AE+WFNQAAEYWK AIALTP N
Sbjct: 119 RGEQAIRQGDSEVAESWFNQAAEYWKQAIALTPGN 153

[Close]

BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: A8SEA4 (Photosystem I assembly protein Ycf3 OS=Ceratophyllum demersum OX=4428 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 39  RGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           RGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGN 153

[Close]

BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A4U5Q996 (30S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 21  EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           +ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 223 QETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGN 275

[Close]

BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: W1P7C5 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 22 ETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
          ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWK A+ALTP N
Sbjct: 4  ETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGN 55

[Close]

BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A7J6HQR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 22 ETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
          ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWK A+ALTP N
Sbjct: 4  ETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGN 55

[Close]

BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A444XLF1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096572 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.1e-18
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 21 EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
          +ETLKYGSKGRNL  YSDRGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPSN 55

[Close]

BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A445C631 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 21 EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
          +ETLKYGSKGRNL  YSDRGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGN 55

[Close]

BLAST of Lsi03G009570 vs. NCBI nr
Match: KAE8652973.1 (hypothetical protein Csa_021105 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 21 EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTP 72
          EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWK AIALTP
Sbjct: 3  EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTP 53

[Close]

BLAST of Lsi03G009570 vs. NCBI nr
Match: TKS04885.1 (ribosomal protein S4 [Populus alba])

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 21  EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           +ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 223 QETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGN 275

[Close]

BLAST of Lsi03G009570 vs. NCBI nr
Match: KAG6735386.1 (hypothetical protein POTOM_062012 [Populus tomentosa])

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 21  EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           +ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 67  QETLKYGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGN 119

[Close]

BLAST of Lsi03G009570 vs. NCBI nr
Match: ERN02875.1 (hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 hypothetical protein G4B88_027372 [Cannabis sativa])

HSP 1 Score: 100.1 bits (248), Expect = 8.1e-18
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 22 ETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
          ETLKYGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWK A+ALTP N
Sbjct: 4  ETLKYGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGN 55

[Close]

BLAST of Lsi03G009570 vs. NCBI nr
Match: RYQ90503.1 (hypothetical protein Ahy_B09g096572 isoform E [Arachis hypogaea])

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 21 EETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
          +ETLKYGSKGRNL  YSDRGEQAIRQGDSEIAEAWF+QAAEYWK AIALTP N
Sbjct: 3  QETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPSN 55

[Close]

BLAST of Lsi03G009570 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 4.6e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 39  RGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN 74
           RGEQAI+QGDSE+AEAWF QAAEYWK AI LTP N
Sbjct: 77  RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGN 111

The following BLAST results are available for this feature:

BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH4	4.1e-12	94.29	Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1	[more]
Q09MH7	5.3e-12	91.43	Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1	[more]
A4GG96	1.2e-11	88.57	Photosystem I assembly protein Ycf3 OS=Phaseolus vulgaris OX=3885 GN=ycf3 PE=3 S...	[more]
Q2PMU4	1.2e-11	88.57	Photosystem I assembly protein Ycf3 OS=Glycine max OX=3847 GN=ycf3 PE=3 SV=1	[more]
A8SEA4	1.5e-11	91.43	Photosystem I assembly protein Ycf3 OS=Ceratophyllum demersum OX=4428 GN=ycf3 PE...	[more]

BLAST of Lsi03G009570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5Q996	2.3e-18	90.57	30S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV...	[more]
W1P7C5	3.9e-18	90.38	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220...	[more]
A0A7J6HQR9	3.9e-18	90.38	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1	[more]
A0A444XLF1	5.1e-18	88.68	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096572 PE=4 SV=1	[more]
A0A445C631	6.7e-18	88.68	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1	[more]

BLAST of Lsi03G009570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652973.1	1.9e-19	98.04	hypothetical protein Csa_021105 [Cucumis sativus]	[more]
TKS04885.1	4.8e-18	90.57	ribosomal protein S4 [Populus alba]	[more]
KAG6735386.1	4.8e-18	90.57	hypothetical protein POTOM_062012 [Populus tomentosa]	[more]
ERN02875.1	8.1e-18	90.38	hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 h...	[more]
RYQ90503.1	1.1e-17	88.68	hypothetical protein Ahy_B09g096572 isoform E [Arachis hypogaea]	[more]

BLAST of Lsi03G009570 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00360.1	4.6e-11	82.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 6..73
None	No IPR available	PANTHER	PTHR26312:SF178	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	coord: 6..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009570.1	Lsi03G009570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome