Lsi03G009520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G009520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease T(2)
Locationchr03: 18212985 .. 18221305 (-)
RNA-Seq ExpressionLsi03G009520
SyntenyLsi03G009520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTCATTTTCTAGGTAATGTTATACATTCCATGATATTAAACATAATGCCTAGCTATCTTCTATACCAATGTTATTTCACTTTAACCTTTCACTACACTTGTAGATTAGTTCCTTGATTGAGGATATTGATAAGTATTGGCCAAGTTATCGGTGTGGTCTTGTAAACAGTTGCGATAACAGAAAAGGATCATTTTGGGCTCACCAGGTTCAAATATTCTAAGAAAAAATATACTTTTGGTCCTTCAAGTTAATTTGGATTTGATTTTGGATTCTTAAATTGTCAAATTCGACATTATAATTTCGAATATTTGAAATAATAAGTGATTCAGGTTAACTATCATTTTTTAAGCTAATGTCGCTTAAATATATTAATTTTAGGAAAATTTTTAAAAATAGAAAAATAAGGGAAACTATTTATACAAAATAGCAAAATTTATAGATAGTTGTGATAGATGCTAATAGAAGTCTATCAATGTCTATCAGTATTTTTTTTTCTATTTTCTGTAGGTAGTTTAATATTTTTTTTATCCGTGAAAATTTTCCTTAATTTTATAGTTTTTAAATCGTTGATGTGGCAAAAAAAAAAAAAACACTAATAATTTTAAAAATAAAAAATCTCATTAATTTTGTTCAGTTTTTTTTTTTTTTTTTTTTGGGTAGGAAAATGAAGAACATTTTTTTTAATTACATTGAAGAAGTTAGAAGAAAAGTGAAGATGATGTTTTTTTCTTTATATTTAATATTTTTTCTATAATAAAATTTTGACGCTTATCTTGTAATAAATTAATGCCACATCAACAATATAATAAATAAATAATGTTATAATATTTTAAGAAATTTTTTCTTGAACAAATTATAAAAGCCACCCTTAAAGTATGGTGGTAGTTGCAATTACATCCTTAAACTTTCAATGGTAAGAATTGGGCTCTCAAAAACTTATACTTAACCCTCTAACTTAAAATAGTTTTAGAAATTAGACCCCAATAGGAGATAAAAATATAACCTTTGAACTTATACAATTGTTACAATTTCTATGATTATGTAAGTTTGAGGGTCAAATTTTAACATTTGTATAAAGTTTTTATAATTGAAAGTTTGAAGGGTATATAATTACAACTATCATCATACTTTATAGGAGTAGCTTTTGCAATTTGTCCAAAAAAATAAAAAATATAAGTCAACTTTCAGTCAACTACATTAGTGAAAATTAATGATAGTGACTAAAAAAGAGATGGTCTTACAAACCTCATGAGTTAAAATGTCGAGTTTGATAACTCGGGAACCAAAATCCTACCTAAATTAAATTTTAATGACTAAAAAGGTATTTTTTTCTAGTTGTTTATCTCTATCATTTTTTCCTTATCTTATTAAAAAAAATTGAGACTTAATCCTAAATTCTCTCTCTTTTTTCCCTTATCCATTGATGGCCATTTGGCATGTTATCACTACTGCAGTATGGTATGTTTTTTTCACCTCTTCCATCTCTGATGTTTTTCCTTTCTTCATTCTTACTTCACCCCTGAATAAAGGCATTTTCTTTTAAAGTTAAATATTTAGTTTTTAGATTGTGTTTCGAATATATTTTCAAAGTGTTTAATTTAAAAAATAAGTTATTTTAAAAAAAAAATTAGAGTGCTTGACAACCTATCAAAATAGCTTTTGAAGTGTATTTTAAATCGTTTTTATCAAAAGAGTTTAAATAAAAGGGACAATTGCAAATATAACAACGTCAGATTCAATGTATTATCATATATAGTAATATTTTTAAAAAATTGCAAATATAGCAAAGTCTATCAGATGATAGACTTCTATCGTTAATAAGACTTTTATGGTCTATCAGTAATAGGTCATAAGAGTATCAACGATAGAAGTCTATCACTGATAAACTTTGCTATATTTGTAATTTTTTAAAAATATTGTACACTTAGTTATTATCCTTAAAATTGCTACTTCATTACAATTACTCTAAATAAATAAAGATGAGTTTTTTTTTTTTTTTTTTTTTGTCCAAACCGGCCTTAACCAATGAAAATAGAAGTGTTTTGAAAACATTTAAAAACATATTTTAGAAAAGAAGGAAAAAACATATTCAAATTAAATACCATTATATTAGATTAGACTTATGCATATTAAACTAATCTTTAATTTCCCTTTTTTAATTTTTTGTGTAGAGAAACATGGAACCTGTGGATCTCCTGTAATCCTACAAGAATATGATTACTTCTTGACAACTCTCACCCTTTTCTTTAAGTATAATGTCACTGTAAGCAACTTCTTGACAACTCTCACCCTTTTCATGGATAAAGTCTAGTTAATTAGACGAGTAGTAGGAGTTAGGTCAATAACAAATATTGAATTATTTTTCTCCATTATATTACTTTTTTTTTCTTTTCTTTTTCTTTGTGTGTGTGTCTTTGTTTTGTGCCGTTGAGGATTTTGAAGCGTTTTTTTTTAAAAAAAAACTCAGGAAGCTCTGGAGAATGCTGAAATTGTGGCTTCCGATACCCAAAAATATCCTATTCAAGATGTCTTTAATGCAATTCACTCCGCTTTCGAAGCAAATCCAAAGCTTGCATGCGCTAAAAAGGGGATTATCAGAGAACTTCATCTATGCTTTGATAAACAATTTAAGGTATATACATATTACTTTGTGTTCATAAATTCATACCCAACCAAAATTAATCATATAAAAATTTTCTAATCCCTTCCTTTCCTTTTTTGTTTTTAAAATTTTTGTGCTTGTTTTCATACTTTTTTTTTTCAAAAGATGGTCGGCTTTCTAAAGGAAACATTTGAATCTTTAGCTTAATTTTCAAAAATATTAAAAAAAAAAAAAAAAATTCTTAAAGAACCTTTATAGGATGGATATAGTGTTTATCATCTTAATTTCTAAAAATCAAATGGTTATCAAACATAGTCTTAATTAGCTTTTAGTTTTTATTAAATTATTTGTAATGAATATGATTGATTGATGAAAGTAAATGTTTATATTCGTTGCAGCTACGTGATTGTGATGCTACAAAATCATGTCCCAAATCTGTTAAGCTCCCAAAATTCCATGAGCCAGAGGGTAAGCTTCTTTTTCTCTTAAGAATCTAAATTCAAAACACATTATTTGGCCACCATATAATTAAAGATGCATTATTTGACTGAATGGATCGCATATATATATATATATATATATATATATATATGTACAAAAAAAAAAAAAAAAAAGGAAAGTGCCTTTGGGTGCTTGGCTCATAAATTTTGGAATTAGGGAAGTTTGACCATATTTGAGCACTTAGAATGACATTATCGGAAATAATAAACCAAACTTATGGATATGGAAGAAGGGTTATTTTAATGAATGCTATAAATTTGAAAATAAAAATTTCCCTTCACCTCTTACCTTTTATCATTGGTTGTTGGTGATTGCCGCCAATCGACCGTCGTGACCGATGCTGGTCAACAGTTGTGACTATCGTTAGTGACTGCTGTGATCATTGTCGACGACCACCGCAGTGCTAACTACCTTGATCATCACAACCGCTGTTTATCATTCATTCGTGCTAGTCATTGATCTATAATATGATTTTTCTTTTACTGGAAATGTAGAGAAGAATGGGAGAAATGAGAAGGAGAAAGAGATAAGGAAATGGGAAGGAGAATGAAGAGTAAGAAAAGTAAAATGTAAAGAGATGAAGGAGACTATCTCCCGTGGCAGCTATTGTCATTGATGTTGAAGGAAGAAGATGAAGGGACTAGAAGGAAAAAGAAGGGGTGAGCTAGAGAAAGAAAGAAAAATAATAATTAATTAATGTTTGGGACATTTTTAAAAATAGAAAAATAAGGAAAACTATTTATATAAAATAGAAAATTTTTTAGATAGCTGTGATAGACGCGGATAAAAGTCTATCAATGTCTATCAGTTTTTTTTTTTTTTTTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTTTGAAAATTTTCCTTAATATTTTATAATTTAATAAGTTAATTAGAAAAATATTTTTAAATTAAAAATAGGTGTCATATCAATTTCCATTAGTAATTAACAAAAAAAAAAAAATTGACAGGTGAACTAAGAATGTTATTAAATGCATACCTCATAGAAAAAATTCATTTCATTCCAAAAAAATAAATAAATAAATCTGAGGCACGTTACTAGTGTCTAAATTTGTTAAAATTGTGTTAGTAAACTAAATTTCAAACTTTGCTACTTTGTTATCAAAAGCTAAATTTATGTAATTGAAAAGAATATATAAATTAGAAATTTAAATCAAAACTTAATTTTTAAACCGACACCAAATTTCAAATTTTGCTACTTTGTAAACAAACACCAAATTTATTATTAAAGAAAAACTAAATTATTGTCAAGAAAATCAATAGTGTAAATAAACTAATATAAATTTAATTTTAAAATGAATAAATTAAATGTTCATTCAAAATTATTATTAAAATTTGATCCATCGTAAACTAGAGGTTATATAGTTCACAAAATAACTGTTAAAAAACAAGAAAAAAAATACAGATTATCCAAACTCAGACATTAGTAACCTACCTCCAAATACAGGTTTCAGAAACACATGCTTTCAAATCTACACTACAAACAAAGATATTTGTAATTGTTAGGCTTCAAAACTTCCTTAAATAAACCTCCAGATATATTTGATTTCTTGACTTTTGTTTCTAAACCTACGTGCCAAAAGCCTTCGAGTTTCTTTTATTACCAAACACCTACCTCAAAAAAAAAAAAAATAATAATAATAATAATAATAATAACTTAGTGTCCTTTTTATGTCTCTATACTCAAAAGTTTACTCATGATTTTGAAAATGAAAAGAAAGACTAAAGAACTAAACAAAAAGGACATATTATAACACACTAGATGTGAAAGTTTAAACTAATAATTATCATCCAATTAGATAATTATTTGGTTTTAATTTTAGTTTTGAAATTAAACTTTAAATGTACATATTAGGAGTGTTTTTAAAATTTATTTTCAAAATCAAACCCAATTTTGAAAAAAGAAAAAATAGTTTTCAAAAAGAAAAATTATTATAAATAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTAACTATCTATTAATGATGTACTGCGATAGACTTCTATCACTTGAGCGAAACCAGCCCTTTCAAAAATTTTGTTTTTGTTTACAGAAAATAATTAAGAATTCAAATGTTTATATATGAATTAAGAAAATCATCAACGTGAGAGATCGAAGTACAACCTTCAAAAATTAAAAAAAAAAATTAAATTGTTAATTATCAAACGAGGCATATTTAATATTGTTTTTGTGATTGCAGAGGCTGACATGTTTAAGAGAGCAATTCCAAAAGTGATTGATGTTGAAGCAATTATGTAGCTTCATTTTTGGGCCTTGAAAAGATTAGAAATATCCTTCAACATTTTGGCCCTTATCTTTTATATCCAAATTTTCTTATATATATTCTCAAGTACTTTGCAATTCCCACCACAAAAATTTTGAACTTTATCATTTGGTTTGAATTGAATGGCTCCATTTTGAGGACGACTTTCTTTAATTTTCACTTAATTAGTGGTCTCAATAATTACACAATGTTATATTGTGTTATGTATAGTGTTTTCTTGTGGACATTATATCATATATTGTTGAGAATATTTTAATGTCATCTAAATCAAAATTAAATTATAATAGTAATATTATTATATATCATATAAGATATGGTCCAAAGGAATGAATAGTTGCAATAACAAATATAATGCTTTTTCAAATAAATATACATAAGCAATTTCAATCTATTTTTTATTCTATCATAAGTTTTTTTTTTTTTTAATACAACAAAAGTATTATGAAAATTTTAACCCTCTAATCTCAAAGTATATGGAAATTTCCCTCTTTGCCTTTCATTACATCCGACATTTCCTTTTTATAAGATTCCTGACACTATTCAAATAAATTAAATACGCTTAATTTTGACAAGTATAACTTCTAAAATAGTACTTTTTTTTTTCTATTCTTAATTATAACTAAGGTTTGAAATATCGATGTCGATGAAAATATTGAAGTCTCGATTTTATAGAAATATCGATAAAAATTTTGAGAAAATTTATGGAAATTGTTATAATTAATTAATGAAACTTTGATTGTGGCTTAATTAAACTATAACTAACCATTTTTAATCACAATTTCTATAAAGTAAGACAATATTTAGATGTCTATTGTAAATATCTGAGTAACTGTTGATCCAAAAGCAGAAATTTAAAAAAGAAATGAAAAAATAATTACACAATAATAAAAAGTTTATGAATATTTTGAGGTAAAATGATCTGAAAATTATGAAAGTTTTGGATGGTAAAAGAAAAAACTCACATTAATTCAATTTTAAGGTGACGTGATGTGAAAATTTAATGAAAAAAGTTTGATTGAGCTTAAAAATAAATATAGATTATTTTTTGTGGTTATTTTAAATTCAATTTATTTATAAATGAAAGTTTTGGGTAAAAAAATAAAGCTAATACTTGAGAAAAGTTCAAAATTAAAAAAAGCAGCACATAAAAAATGCTTAATCCTTTGTAAAAATGACATTGGCGTGTGAAACTATATAATTATGTGTGAGAGGACCATAAAATTGAAAATTTTGAATTGAGCTAAAATAGTTAATCATAAAAAAAAATTAAAATTTTCTCAAAATGTCGAAATGGGGGAATCGGAATATTCTCGAAATCTCGAAATTTTGTCAAAATTGGGAAAAAAACGAAATTTCTTCCAACCAATATTTCGAAATCTTGAAATTTAGAGATTTCGATGGAAAATTTTCACTAGATTATAACTAATATTGGAAAAAGACTTTTTATAATTGAAATAAGGGCTCTTTTCAAATATAGAAAAATAAGTCAAACTATTTACAAATATAGAAAAATTTTACCGTCTATCATTGATAGATCGCGATAGAATTCTATCGCTCAGACGATAGAATTTATTTGCTTGAGCGATAGAAAGCGATAGAATTCTATCGCGGTCTATCACGGACAGAATGAAATTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTGTTTATAGTAATTTTTCCTGAAATAAAATGAATTAATTTTGATTTGCTTTATCAACACTTTCATGATTTTTGCTCCATTATTGGAAATGAAATTAATAAAGAATCGATGCATGAATGGTATAAGACTAAACCACAAATCTTGAACAACAAACAATTGGAGTAACTGATTACTAAAGAAAAGATTATAAGTAAATAATAATAATAATAATAAATTTCAAACCCACCTCTAGGAAGGATAGCCTTGTCAATGTCTCTATCACTTCCTTCCATCAATATACTAATAGTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTGATTCCAAAATTGTTTATAAATTAATTATTGTTAGGCTCAAAATTATCCTAAAACATGTCCGTAATCATCTTAAATGAATTTAATGTTTGATTTTACATTTTTAAACGTTCTTTTCTTACCATCAAAGTTCATTTTAAATAGTTAAAAGTATATTTTAAAGTGACTCAATTTAAAGTAAGTAAACAAAAATTCATACTCGATCTCATAGATACATATAGAGAATTTTGTGGAAACCTGTTTTTAATGAAAGTTGTATGTACGACTTGAAGGGAGATCTTTCATATCTTTCGAGATCCACTCCTACAATATGGAGTCAAAAAGCCAAAATAAATTATTTTAACCCTTAGAAAAAGAACACTTTGAACACGACAAAAGTAGTTTTTATCATTTCAAATTCACTCTCAAACATGTCTATATAGTCAAAAAGTTGTGCTCGTTCCGCCTAGGGCATGATCGTACATCTACCTTCGTTAAGATTATCTTAGCACTTGAAATCATCATTTCCAAGTCCATAAGTTCATAGGAATAACTTCAATCATATTCAAAAACAAAAAGCAACTATTGAAAATTTGTTATCTAATTAGGTGAGGGAGGTGATGGAGATTCACCTATTGATGGATATTTCTTAACGAGTTGAGCTATATTCAAATTGGTCACATTTATCCCATCTCCTAACAAATAAAGTACAATATATGACTTTTGAAATGGCATTTGAAACTTCTGTCAATACTAACAGCTTTTCTAACAAAAGGTTATATGTTTTTGTTTTAAAAGTTAGATTACTGATCTTGGTGGATCAAGAGCTTTCGAGAGGCGCTGTACCACCGAGCATACGAAGCGTGGAGGTTCGGCCAGTCGGAGGAGGAGGAGTAAGTGA

mRNA sequence

ATGAATGAAGCTCTGGAGAATGCTGAAATTGTGGCTTCCGATACCCAAAAATATCCTATTCAAGATGTCTTTAATGCAATTCACTCCGCTTTCGAAGCAAATCCAAAGCTTGCATGCGCTAAAAAGGGGATTATCAGAGAACTTCATCTATGCTTTGATAAACAATTTAAGATTACTGATCTTGGTGGATCAAGAGCTTTCGAGAGGCGCTGTACCACCGAGCATACGAAGCGTGGAGGTTCGGCCAGTCGGAGGAGGAGGAGTAAGTGA

Coding sequence (CDS)

ATGAATGAAGCTCTGGAGAATGCTGAAATTGTGGCTTCCGATACCCAAAAATATCCTATTCAAGATGTCTTTAATGCAATTCACTCCGCTTTCGAAGCAAATCCAAAGCTTGCATGCGCTAAAAAGGGGATTATCAGAGAACTTCATCTATGCTTTGATAAACAATTTAAGATTACTGATCTTGGTGGATCAAGAGCTTTCGAGAGGCGCTGTACCACCGAGCATACGAAGCGTGGAGGTTCGGCCAGTCGGAGGAGGAGGAGTAAGTGA

Protein sequence

MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITDLGGSRAFERRCTTEHTKRGGSASRRRRSK
Homology
[Close]
BLAST of Lsi03G009520 vs. ExPASy Swiss-Prot
Match: P42814 (Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-06
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + + L  A  VAS+++KYP+  +  AI +AF   P++ C K+  I E+ +CF K FK  D
Sbjct: 160 VTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFKPRD 219

Query: 61  LGGSRAFERR 71
             GS+    R
Sbjct: 220 CVGSQDLTSR 228

[Close]
BLAST of Lsi03G009520 vs. ExPASy TrEMBL
Match: A0A0A0KVR6 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_4G109040 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.7e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASDT+KYPIQDV NA+HSAF+ NPKLAC KKGII+E++LCFDKQFK+ D
Sbjct: 166 VTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKLRD 225

Query: 61  LGGSRA 67
              +++
Sbjct: 226 CDATKS 231

[Close]
BLAST of Lsi03G009520 vs. ExPASy TrEMBL
Match: A0A1S3CHU7 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK+ D
Sbjct: 165 VTEALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKLRD 224

Query: 61  LGGSRA 67
              +++
Sbjct: 225 CDATKS 230

[Close]
BLAST of Lsi03G009520 vs. ExPASy TrEMBL
Match: A0A1S3CID9 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.4e-19
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 3   EALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITDLG 62
           EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK+ D  
Sbjct: 135 EALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKLRDCD 194

Query: 63  GSRA 67
            +++
Sbjct: 195 ATKS 198

[Close]
BLAST of Lsi03G009520 vs. ExPASy TrEMBL
Match: A0A1S3CJH0 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.3e-18
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFK 58
           + EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK
Sbjct: 165 VTEALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFK 221

[Close]
BLAST of Lsi03G009520 vs. ExPASy TrEMBL
Match: A0A6J1E4S1 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430736 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.7e-16
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + E LE+AEIVASDT+KY I+DVF A+ SAF+ANPKL+C K GII+EL LCFDK+FK+ D
Sbjct: 166 VTEVLEDAEIVASDTKKYGIEDVFEAVRSAFKANPKLSCGKNGIIKELRLCFDKEFKVID 225

Query: 61  LGGSRA 67
              +++
Sbjct: 226 CDATKS 231

[Close]
BLAST of Lsi03G009520 vs. NCBI nr
Match: XP_011653385.1 (ribonuclease 2 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASDT+KYPIQDV NA+HSAF+ NPKLAC KKGII+E++LCFDKQFK+ D
Sbjct: 166 VTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKLRD 225

Query: 61  LGGSRA 67
              +++
Sbjct: 226 CDATKS 231

[Close]
BLAST of Lsi03G009520 vs. NCBI nr
Match: KAE8649307.1 (hypothetical protein Csa_015411 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASDT+KYPIQDV NA+HSAF+ NPKLAC KKGII+E++LCFDKQFK+ D
Sbjct: 307 VTEALENAEIVASDTKKYPIQDVLNAVHSAFKVNPKLACVKKGIIKEIYLCFDKQFKLRD 366

Query: 61  LGGSRA 67
              +++
Sbjct: 367 CDATKS 372

[Close]
BLAST of Lsi03G009520 vs. NCBI nr
Match: XP_008462862.1 (PREDICTED: ribonuclease 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK+ D
Sbjct: 165 VTEALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKLRD 224

Query: 61  LGGSRA 67
              +++
Sbjct: 225 CDATKS 230

[Close]
BLAST of Lsi03G009520 vs. NCBI nr
Match: XP_008462863.1 (PREDICTED: ribonuclease 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 3   EALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITDLG 62
           EALENAEIVASD +KYPIQDV NA+HSAF+ANPKLAC K GII+E++LCFDKQFK+ D  
Sbjct: 135 EALENAEIVASDIRKYPIQDVLNAVHSAFKANPKLACIKNGIIKEMYLCFDKQFKLRDCD 194

Query: 63  GSRA 67
            +++
Sbjct: 195 ATKS 198

[Close]
BLAST of Lsi03G009520 vs. NCBI nr
Match: XP_038876680.1 (ribonuclease 2-like isoform X3 [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 4.5e-18
Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + +ALENAEI+ASD +KYPIQDV NA+H AF+ANPKLACAK+GII+E++LCFDKQFK+ D
Sbjct: 147 VTKALENAEIIASDIKKYPIQDVVNAVHLAFKANPKLACAKRGIIKEIYLCFDKQFKLRD 206

Query: 61  LGGSRA 67
              +++
Sbjct: 207 CDATKS 212

[Close]
BLAST of Lsi03G009520 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 )

HSP 1 Score: 51.6 bits (122), Expect = 3.8e-07
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0 

Query: 1   MNEALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITD 60
           + + L  A  VAS+++KYP+  +  AI +AF   P++ C K+  I E+ +CF K FK  D
Sbjct: 160 VTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFKPRD 219

Query: 61  LGGSRAFERR 71
             GS+    R
Sbjct: 220 CVGSQDLTSR 228

[Close]
BLAST of Lsi03G009520 vs. TAIR 10
Match: AT2G39780.2 (ribonuclease 2 )

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-07
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 0 

Query: 3   EALENAEIVASDTQKYPIQDVFNAIHSAFEANPKLACAKKGIIRELHLCFDKQFKITDLG 62
           + L  A  VAS+++KYP+  +  AI +AF   P++ C K+  I E+ +CF K FK  D  
Sbjct: 130 DVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVC-KRDAIDEIRICFYKDFKPRDCV 189

Query: 63  GSRAFERR 71
           GS+    R
Sbjct: 190 GSQDLTSR 196

The following BLAST results are available for this feature:
BLAST of Lsi03G009520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P428145.3e-0637.14Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1[more]
BLAST of Lsi03G009520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVR66.7e-2071.21Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_4G109040 PE=3 SV=1[more]
A0A1S3CHU75.7e-1969.70Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1[more]
A0A1S3CID97.4e-1971.88Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1[more]
A0A1S3CJH06.3e-1878.95Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103501145 PE=3 SV=1[more]
A0A6J1E4S17.7e-1662.12Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111430736 PE=3 SV=1[more]
BLAST of Lsi03G009520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653385.11.4e-1971.21ribonuclease 2 [Cucumis sativus][more]
KAE8649307.11.4e-1971.21hypothetical protein Csa_015411 [Cucumis sativus][more]
XP_008462862.11.2e-1869.70PREDICTED: ribonuclease 2-like isoform X1 [Cucumis melo][more]
XP_008462863.11.5e-1871.88PREDICTED: ribonuclease 2-like isoform X2 [Cucumis melo][more]
XP_038876680.14.5e-1866.67ribonuclease 2-like isoform X3 [Benincasa hispida][more]
BLAST of Lsi03G009520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39780.13.8e-0737.14ribonuclease 2 [more]
AT2G39780.24.9e-0738.24ribonuclease 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036430Ribonuclease T2-like superfamilyGENE3D3.90.730.10coord: 1..76
e-value: 1.2E-13
score: 53.6
IPR036430Ribonuclease T2-like superfamilySUPERFAMILY55895Ribonuclease Rh-likecoord: 3..62
IPR001568Ribonuclease T2-likePFAMPF00445Ribonuclease_T2coord: 2..59
e-value: 1.2E-10
score: 41.9
IPR001568Ribonuclease T2-likePANTHERPTHR11240RIBONUCLEASE T2coord: 2..77
NoneNo IPR availablePANTHERPTHR11240:SF51RIBONUCLEASE 2coord: 2..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G009520.1Lsi03G009520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006401 RNA catabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0033897 ribonuclease T2 activity
molecular_function GO:0003723 RNA binding