Lsi03G009220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G009220
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L29, chloroplastic-like
Locationchr03: 17518292 .. 17520506 (-)
RNA-Seq ExpressionLsi03G009220
SyntenyLsi03G009220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACCTTTCAATTGCTTCGCCTTCCACCGTTTCTATTCCTTCAAGAATTCTTAACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCTGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCGCAATTCTTCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATCAGAGCGAAAACTACAGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCGGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTCTTTCCCCTCGTTGATGGATTCTTAATTAATTTTGAGTTCAGTAGAAATGTGGCTATTATGTTCGTTTCAAACATATACTTTTTACCGTCTCCTATCCTCCACATTTTTGCTTATCTGGTGCTAGATTTATTGGTAGGATTAAATTCTGGAGCTCAATGGCTAGTAATGGGGATCTGTGGTTGTTGGGACCTAAGATTATTGGCTATTGTTTCCTGTCAAAAGAGAAGAAGTGTAGGAATAAATAAAATCTGCGGAGTAAAATGATTCTAGAACCATATACTTTTGTGGGAATTAATTTAGGATGCAGATTTGAGGTCACAATACAGAGAAATTAACCAAAACAATATTTCACCATGTTGGGAACTTGTTATAAAAGTTGCATTTAGAGGAAGATAGAGCCAGTTTGAATGTGCTCTGAAATGTAGAAGTCCAGTTAGAATCAGAAAATGTAATTGAAATTGGGATTTCTAACGCTAACAACTTCATCTTCAACTAAGATTAACTCCAAATATAACACATTAGAAATAGCTTCTTCATAGATTTTACATTTTTATCAGATTAAAACTGTCTCCTAAAGACTCTTAGTGTCTTCATGCTAACATTTTGCTTAAGATTCCCAAAACGCCTGAACCTTGAATGAGTCTATGAGTGTGGAAATCAAAATTCCATTTGGGTTCAGAATAACTTGTCTTTTTATATTAAGTTGGTTAATGTGAGAAGCTAAACCTATTCTGATCCATGGAAGCATCACAATTTTTAATGCATAAAAGAGAGATTTTGCCATTTGAACCATATGTAGCCTTCTCATAACTTCTATACCAAAATTTCTGCATGCTTGGTGCTTAGCATGGATATCGGAATTATCTGCTGGGCTTCTTTCTGTTGCACTGAACCAAAGCCAAATGATGAGAAGTTGAATAGTTTATTTACACATTATGAATTAAGACTGGCAGTTTTTAGAATGCACTTATGATCATGATGGAGTTTAACACTGTAATTGTGGTAAGACATTTTGCATCTATAGTCTAATCCCATGGCTTCATGATAGGGTCTTGAGTTGTTTGTAGTTACCCTCTAATGTCTTGGTTCAAAGCCTCCATCTATTTAACTTAGTACTTGGATTTTGTCTCCAGGGCCTGCTTTAAGAAAGATTATTTAATGAGTCCACCACAATGTGGTTGCTTCATAATAAGTTATTAACCATTCAATGAGGATCCAATAATCTGCAGTCCCTTAATATCCACTTGATATAAATTTGAACTATTTCTCCCTCTACATCCAAAGGTGAAAAACTGCCACCTACTTTGTAATGGTCTCACCAAATAATTTCTTCACAACTGAACCGGGTGAAGCCTTCTTAGAGCTTAGTGGTGTGAGTCATGAACATAGGAATGGGGCTTGATGATCACAGTTCTCAATAAAGTGGGTGGAAAATAACTTCTCAGCAACACAATATTGCAGAGATCGATTGATATATATGCAGTAGTATGCTAATGGTGGACAATCAGGAAGTTTATATTATATATTACTTCTCCTCTGTTTAGTGCTATTATTTATCTTCTCATACTTTCAGATTGCAACAACATGACCATTACATCCAATGTTTGGACTTGCCTAACAACTTTCCTTTCGACTTGGAGCATCGAACGATTAATGTACCTCGGAGTTTTGAATAATTTGTTGTTGTTTGTCTGATGACAGATTGCTCGGATGCTAACTGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCACTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCCGAAGAAGCTGAGAAATCTGCTTGA

mRNA sequence

ATGATAAACCTTTCAATTGCTTCGCCTTCCACCGTTTCTATTCCTTCAAGAATTCTTAACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCTGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCGCAATTCTTCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATCAGAGCGAAAACTACAGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCGGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACTGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCACTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCCGAAGAAGCTGAGAAATCTGCTTGA

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCCACCGTTTCTATTCCTTCAAGAATTCTTAACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCTGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACGGCATGTACCGGAGGCCGCAATTCTTCGGTGGTAATGATGGCCAAGAGGGAGGAGGAATTGAAGGATATCAGAGCGAAAACTACAGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCGGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACTGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCACTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCCGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of Lsi03G009220 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.0e-47
Identity = 113/168 (67.26%), Postives = 136/168 (80.95%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNS--TSKSSFNGLQICFPFSFRVP-PKTACTGGRNSSVVMM 60
           M++LSIA+P T +I  R   S  ++ SSF+G++I    S RVP   T  +     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of Lsi03G009220 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-38
Identity = 93/148 (62.84%), Postives = 117/148 (79.05%), Query Frame = 0 

Query: 23  SKSSFNGLQ---ICFPFSFRVPPKTACTGGRNSSVVMMAKREEELKDIRAKTTEEINEEV 82
           +KSSF+GL+   +    S R+  +T       SSVV+M K+E+ELK++R KT E++NEE+
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTP-----PSSVVVMVKKEDELKELRTKTNEQLNEEI 85

Query: 83  VDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKW 142
           + LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ W
Sbjct: 86  LQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAW 145

Query: 143 KKSIVVRPPPSLKKLREEEAAAEEAEKS 168
           K+SIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 146 KRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of Lsi03G009220 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 9.3e-36
Identity = 81/108 (75.00%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 50  RNSSVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRK 109
           R +++V MAKRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of Lsi03G009220 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 21/63 (33.33%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 63  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 122
           ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 123 IEE 126
           + +
Sbjct: 65  LTQ 67

[Close]
BLAST of Lsi03G009220 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.2e-04
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 65  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           K+IR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]
BLAST of Lsi03G009220 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.9e-73
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           MINLSIASPS+VS PS+ L+STSKSSFNG QI FPFSFRVPPKTA TGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           MINLSIASPS+V+IP++ L+STSKSSFNGLQI FPFSFRVPPK AC GGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 155/168 (92.26%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           M+NLSIASPS+VS PS+ L+STSKSSFNG QI FPFSFRVPPKTA TGGRNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.5e-70
Identity = 150/164 (91.46%), Postives = 158/164 (96.34%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           M+NLSIASPS+V+IP++ L+STSKSSFNGLQI FPFS RVPPK ACTGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA 165
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 164

[Close]
BLAST of Lsi03G009220 vs. ExPASy TrEMBL
Match: A0A0A0KVL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MINLSIAS-PSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTG-GRNSSVVMMA 60
           MINLSIAS PST+ IPS+ LNSTSKSSFN LQI FPFSFR+PPKTA TG GRNSSVVMMA
Sbjct: 1   MINLSIASLPSTLPIPSKFLNSTSKSSFNALQIRFPFSFRLPPKTATTGRGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KRE+ELKDIR+KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTV+
Sbjct: 61  KREDELKDIRSKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVR 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 170

[Close]
BLAST of Lsi03G009220 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 160/168 (95.24%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           MINLSIASPSTVSIP ++L STSKSSFNGLQI FPFSFRVPPKTACTGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAK+TEEI EEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           MINLSIASPS+VS PS+ L+STSKSSFNG QI FPFSFRVPPKTA TGGRNSSVVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 155/168 (92.26%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           M+NLSIASPS+V+IP++ L+STSKSSFNGLQI FPFSFRVPPK ACTGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. NCBI nr
Match: XP_022985118.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           MINLSIASPS+V+IP++ L+STSKSSFNGLQI FPFSFRVPPK AC GGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 155/168 (92.26%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNSTSKSSFNGLQICFPFSFRVPPKTACTGGRNSSVVMMAKR 60
           M+NLSIASPS+VS PS+ L+STSKSSFNG QI FPFSFRVPPKTA TGGRNSSVVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Lsi03G009220 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.9e-48
Identity = 113/168 (67.26%), Postives = 136/168 (80.95%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSRILNS--TSKSSFNGLQICFPFSFRVP-PKTACTGGRNSSVVMM 60
           M++LSIA+P T +I  R   S  ++ SSF+G++I    S RVP   T  +     SVVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:
BLAST of Lsi03G009220 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP34.0e-4767.2650S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822481.2e-3862.8450S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI69.3e-3675.0050S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
B8HMR23.2e-0433.3350S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
Q49ZG04.2e-0446.7750S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
BLAST of Lsi03G009220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FMW59.9e-7392.8650S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JCM61.3e-7292.8650S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1IQR32.2e-7292.2650S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1EMX43.5e-7091.4650S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A0A0KVL74.6e-7091.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095600 PE=3 SV=1[more]
BLAST of Lsi03G009220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903244.11.7e-7495.2450S ribosomal protein L29, chloroplastic [Benincasa hispida][more]
XP_022941582.12.0e-7292.8650S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1... [more]
KAG6577307.12.7e-7292.2650S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022985118.12.7e-7292.8650S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_022977189.14.5e-7292.2650S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
BLAST of Lsi03G009220 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.12.9e-4867.26Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 66..121
e-value: 3.0E-16
score: 57.2
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 1.4E-14
score: 53.7
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 13.602084
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 63..126
e-value: 4.8E-15
score: 57.2
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 64..124
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..168
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..168
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 3.63357E-16
score: 66.7422

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G009220.1Lsi03G009220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome