Lsi03G008900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G008900
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionla-related protein 6B-like
Locationchr03: 15850501 .. 15857576 (-)
RNA-Seq ExpressionLsi03G008900
SyntenyLsi03G008900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACCTCAGTTGCCATCTTCGCCCTCACCGGGCTTATTCTTTTATTCCCTATATTTATATATTTTAATTTTTAGATTTAATTTATATATACATATATATTTTAATTTTTACTTTCTTTTTTTCTTCTTCTTCTTGGTTGTCAGAGGCAGAGGACACTCTCTGTTCCTCTCGGAGTCGATCTCAAACTCCATAGCCATCCCTTTCCTTGGACCAGATGGCACAACATTCTTCCTCTTCCCAATCCGATCCGTCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCTCAGGCTCCTGAGTTCGTCCCCACTCGTCCCTCCACTCGTCCCGATCTACAACCACCGCAGTCCGCCCCTGGCCCCCCTCCTCCTCCTCCACCCAAGCAATCCCCTCGTATTCTTATCCCTTCTCCTCCTCCTCCGCCGGCCATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCTATTCAGAATCATCACTATCATCCTCATCATCGCCACCACCATCATTCCCATCACGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCTGACAATGGCGGATTTCATGACCCAGACACGGCGGTTGTGCAGCAAGCTCCGAAGCCTCTGGTTGAGTCCGACTATGCTGCTCCATCTAGGAGTAAACTCACCGAGGAAGTCTCCCTAAAGCTTTTGAATCAGGTTGCCTTTTTCTTTTGACTAGATCCTTTATGTTTATGCTCTTCTCTCTATGCCAACATTTTGTTATCTGCTTGTTTCTTCAATATTTATTCTGGCTTGAAGCTGAATTTCATCATTTTGTGAAGCACCGTAACTAATGAAGCTATTGTGTTTTGAGACCGCGAATTCTGTTGCTTCTACATAGGCACACATTGAGTTAGCTGGAAGTCATGGTTACTTGAAATGTTTTAGAACTTGCTGGGAATTCTGTTCTGGACCCTCTTTTCTAATTGTATTAATATTGTCAATATCTGCAAAATTTATGTTTGCATGAGACTGTAGATAAATTAGGCCTAGCTAAATATGTTGGTTAACAACTAGATATTGCATGGGATATTGAAGCGGACACTAAATACGTTGGTTCCCTGAGCACTGAGAATGGACGTTTCCTGTATTGAACAATTTTAGTAGGCTAGGAGCTACGGACACTCTCTCATGCCCAAAGTGTTGTTGTTGGACAACACTTTGATACATTGATACGCTTCAAACCCATGTCTACATGTGATTTGGAGCAGGGTTTTCATTTTTATTTATTTTGATAAGAAACATAAATTTCATTATCAAAGGGAAAGATACAAAAAGTATGATTGCTGGAAAATGATGGCTCCTTTTCAGTTAAATCTTTCTCCCCCATGCTCATTGTGAAACAAATAGCTACGGAAAGGCAAAAGAGTTAGCCTAGCCACTAACAAAGGCGGAAAAGAAAAGGAAATTTTGGCCTAGAGAATCGAACAGGGATCCTCCAATAGGAAGGAAGTGTGGTACTCAATTCCTTATTTTAAAAAATTGATAAAGGATGCTTAAAAAAAGGAGTCAATGGTTGCTAAACCCGGATGGATGCTATCACCTAAATCTCTAGTGAAAGAAGTTGGATCTTAGGATAGAAAAAGAGTGTTTGCTTTCTTGGAACTGTTTGGTACCTTTTTGGGTCGAGGTAACGCTCATAGAAAACTACAGAGTAACCGTAGGCAAGTAAGATAGATCTTACCGAGAGTGCCTTCTTTAAGCTTGAGCATCAGGTGCTGCGAAATTCCTAGGAGATGAAAAACCCTATTCTGCCGCCAAACTCTATTGCTCAATCGTCCACTTTAGATGAAACTACTCAACTAAATCATATTATGTGGCGGAGACAGAAGGTCTATCCTCTAAGGCAGACAATTATATACGTGGTCTCACCCATCTGATGAAGCGAAGCAAAAGGCTAGTTCTCAATAAAGAAAGCTTCCGCCTCAGGCTCAGTGAGGTGAAGAATATTGATTTCTTTCCGGCTTAGGTCACATAGGCTTAAACAAGGCTTTGAGGCCTTTTGTCCTAAGAAAGTCAAGGTTTTCGTATAGATCTTCTCTTTCAAAAGGCTAAACACTTATGGTAGAATCCAAAGCATCCTTCAAAATTATTCTCTCTCTCCTTATTGACTTATTCTTTGTAAAAACAGTGAGGAGTCTTTGATGCACCTTTATTTCTTTTGTCCCTTTGCTGATGATTGTTCGGGGAGACTATTTAGCTTGTTCAAAATTTAGTGGTGTTGGCCCAAGAAAGCTTTAGATGCCCTTCTACAGTTAGTTGAAGGCTCTCAATTAAATGCTCTGGCAAAAATGCTTTGGTCCAATGGGACCTTCGCCCACCTTTGGAACTTGTGGTTTGAAAGAAACTCTAGAATCTTTTGTGATCAAGAAACTAACGGTGACTTTTTTTGGAGTTTGGTTATCTTTTTGCTTCTACTTGGTCCTTTACTTCTAAATTCTTCTATAATTATAGCCTAACCCAAATTTATACTAGTTGGGCTCCTATTTTATAACATATGTGGGGTTTTCATTTTTATTTTAATTTGTCCAAAATTCAGACACTTATGGGACTCGCAAGATGAATTGGTAGAGACATGTTGAGGCACACTCTAGGGACGTGGAAGACATTTTGAGAAGAGAAAATGAAGAAATCTGTGTTTGAGGTGTAGGTGAAAACTTAGGTTTAGGAAAATTGTGTGAAGAACAAGAGATGGGGAATAGGTTTGGGGCACCATTGAAGCCCATGAGTGTATCTGGTAAACCCCAAGCTTGACAAACTAACGTGGTAAACATGCCACCCAAATCTAAACTCTCACCCACACATGATGTAATAGGTTTGTGATAATTTGGTCAATCAAGCTAATCTTGGTAAATCATTGATTAATTACATTTTAATTACCAAATTAGGTTTTAACCTTTTTTAGTTATCCTTTAGGACACTTGTAATTGTCTATAAATAGAGAGTCCCCCATTGTATTTGAGATCTTCTCATTAATAAAAGATTTTGGTTTGGATTCTTGGAGATTTCTCTCATTTTAGTACTTAGGCTACATCAATTTGGTATCAGAGCAATAATAACAACCAAATTTCATGAGCCACACCAATATGTTGAATATTTGACTATTGAAAGGAAAAATTGTTTCCATCAATACTATCATCAAAGATCCAAAGATTTAAGTTGTTCAAAAAATCATATGTTGTCAAAATATATGCAGACTTCTCAGAAAATGGAGGAAAAAGATTTTCAATTTTCTTTGAATTAGGTTGTCCACAGGTATCTTTTTCTTACACACTTGAAGAATCCACATCTTGCCAATATTTCCTCTGAGATAACCTTAATCTTGGTTGTTCTTGAACGATTCTTGGTAAATCTTGGACATTTCTTGCATACCATTGATTTTGTTGATTCCCTTGTTGTCTTTCTTGGTGGCCAAGGTTAATTTCTACTCTATTCTCTTGTGGTGGAGGTAACTGTGGTTGGTTGTGTGCCTCAATTAATTGGTATGGCCGAATGGACACATTCTCTGCAGTGACTTCATATTCTTTAATGCCTCCATCTTTGTTTTCATTGATTAATTGTTCCTCGTCATTTGGTTCCAATTGAGCAACCTTCGTATTCGTCCCATCGATTTTTTCTTCTTCCAAAACAAGGTCTTGGTTTTGATTTTCTTGAATTATTTCTTTTTTGAACTCTTCCCATTGTTTTGAAAGTTGATCCATATTTCGAGTCATCTTTCCTAACAAACCTTGGATCTCTTTTACTCCCTTCTTCATTTCCTCCAATACTTCAGGATTGATGTACAAATTGGGTGTTCTTGAATAAGTTTCAACCTCATAATTGTTGTAGGACCAATTCTTGAATTTTCTCGAACGCGTTTTGAACTTTCTTGGTCGTTCTTCATATCACGAATAATAATTTCTGTCCCAAAATGCATTAGATCTACTATAAGATTCCATTCTTGGATGATTCTTCAAACTTCTTCTCGCTTCTTGAATTTAAAGGGTTCCCCCTAGTTAAGTGTGTGTTGTTTGGCAACAAGCACAACTTTCGAAGCTCCCTCTTGCGATCAGCCTCGCCAAGAGTTTCCCGGACTTCCAGTAGTTAGCTTGGCCCAGACAGATGCTCTGAAACCAAATTAATGTAGTCTAAGCACTAAAAGGAGAGAAATCTCCAAGAATCCAAACCAAAGTCTTTTATTAATGAGAAGATCTCAAATACAATGGGGGACTCTCTATTTATAGAGAATTACAAGTGTCCTAAAGGATAACTAAAAAAGGTTAAAAACCTAATTTGGTAATTAAAATGTAATTAATCAATGATTTACCAAGATTAGCTTGAATTGACCAAATTATCCCACACCTATTACATCAGAACACATCCCTTTCCTATTTAATCCCTTAATTTACTAGGGCATCTAGAATCCAACATTGTATAATTACTGTTTCACTTCAATATGCTGATGTTTTGGAAGGCTCAAAGCTGTTAGTATACCTATATCTTTTGCTTATAGAAGGGAGTGTAGAACATGAAGACCTTGAAGGTTGCATATCAACCTTCGGTTTTTGGGGGGATAATTAACATATCAACCTCTGTTTTTTGTTTCCTTTAAAAAAAAAAATAACATAATAACCACCAATAACATTTTGGATCAAGTCCCTTCCAGGACATCCGATAAAATTGGAACATTTTGGATCAATTATCTGCTGAAGAAAACTATGTTAATAGCTGGACGACGACTTTCCATTGAAAAATATCCATAAGACTAAATGATTGGTGGCAAATTGCATGAAAGGTGATGTCATAAAAGGATCTTTTAAGCTGTTAAATGGATATTCTACATCTATCATATAGCACTCAGAAATGATGATTGAAGTAGGTACCTAATAAAGTTTTGTCTGTTCCTATGACCTGATATTAAGTTAAAAAAAAGAAAGAAAAAAGAATGGAAGAGGGTTGTGGAACAATGGATAAAAGTACTTGGATATCCTTATTTTAAAGCTGCTATAGTGGTGAACTGTACTTTCTGTCTTAAGGTTATGATGTAATTCTTAAAACAGGGAGTTACTTCACGTATTTATCTCCTTGGTCTGGAGGTGCTGCTCCAATTGGTTGTATAACTGTGTTGAGATTGGTATTGTTGGACTGGAAAACTACCGTTTACATTGGGAAACTGAATGAAAATTAAATCTTCTAGTCATAATTAATTACAAAAGGCAGCTACTACTTGTCGTTTTAAGGATCTTGAAGCTGAAATTTTCCCCATTATAATATAATGCTTGCTGTGTCAATAGAATCCAACATTTTGAGGTTTTTGAAACTCAGTCCCTTGGTGCTACTTCTGTTACTATTGAAGTAAATTTATGTTGAAGGTTACTAATGATTGCCAGATTTAGTAAGCCGTTCCTTAAAGCTTTTGGTGCTCACTCTTCCTTATCGGCAAGGATCAGTTTAAATATTGTGTTAATTTTGGCATTATTTTTTGATGACTTTGAAATGATAAATTTAAATGTTTGTGACTGTCCATCTAGGATATTACTTTTCTACAAATATACTTTGAAATTAGTAGAAAGGTATATAAGTTCGCCAGGACTCTTGCAGTGGTTGTCAATTAAAAGTTGAATGGTTGATTTAATAGGTTGGGTGCTTCTTCTATGTTTTTAAATGTCCAATATTAATTGGATATTGCTTCCTATACCTACTTTTTATTTAACCTTATTCCCTTCATTGAATTCTTTGCGAAATCATGTTTTTTAGGTGGAATATTATTTCAGTGATTTAAACTTGGCAACTACTGATCATTTGATGAGGTTCATCAACAAAGATCCCGATGGATATGGTAAGATCCTCTCATGGCATCTTTATTTGAATTTCACAAGTTGATGTGTCGAACTCCTGTTTTACCATCCCACCACAGGGGGATTGATTTAGTAACATTCACAACTTAATGGTAATTTAGAATGACTTCTTAGAATTAGTCAACTGGACTTCCTTCTCCATCTCTCTCTTATGAACACTTTACCTGAGTAAGGCCATTTTAATTCAGTTCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGTCACTCTCAGCTAGCCAATATTTTGCGGAACTCTTCTAAGCTTGTGAGTATTTCATTTGTTCCTTCTCTACCATTGTTGTCCTCGAGTTATTCTCAATTGTCTTTCTAGGTTTGTCCACCTCATGTTTTTTGGTTCAATATGTTGTGTAGATGGTTAGTGAAGACGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAAGTAGGGTTTGTTTATTTATTTTATTTTAAATTTAATGTTTTAACAAATTTTGTAAAAATAAGTTTTATATTATGTATATACTTTTTTAAATAAAAATTTTACACCTTGTGGATTGGTTCGGTTTTGCATTACAACATGTGTGATGGTTCCATTCCATCCCAGCGTCCAGAATAATATATTATTGATTTACAAACCAATGCATTTAATCTTTGCATGTTCTCTTATTTTACTTGCCCCCTGTCAGTCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCCGCTGTTGGGAGGTACAAGTATTGCATGATCTCGTTGCATGTTCGTCAGCAGCTTGCTAAAGTTATATTGAATTATAATGATGCTTTACTCTTTGCCAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCTTCAACATCTAAATCCTCAAAAGCTGATGGAATGCATTACAGTAACAAGGTATACACATGGGGTATCTGCGCTTTCTGGTGCAATCTTTTTTCTCCATTAACCTCTAGCATTGTAGGGACAATGGATGATTTCCTTAAAGTCTCTGCTGTAGGGATTATCCACTATCTCCATAAGGATTGGTTCCAAGTCAAATGGGTAACGGTTCAAACCCATAGCTCATAA

mRNA sequence

GAGACCTCAGTTGCCATCTTCGCCCTCACCGGGCTTATTCTTTTATTCCCTATATTTATATATTTTAATTTTTAGATTTAATTTATATATACATATATATTTTAATTTTTACTTTCTTTTTTTCTTCTTCTTCTTGGTTGTCAGAGGCAGAGGACACTCTCTGTTCCTCTCGGAGTCGATCTCAAACTCCATAGCCATCCCTTTCCTTGGACCAGATGGCACAACATTCTTCCTCTTCCCAATCCGATCCGTCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCTCAGGCTCCTGAGTTCGTCCCCACTCGTCCCTCCACTCGTCCCGATCTACAACCACCGCAGTCCGCCCCTGGCCCCCCTCCTCCTCCTCCACCCAAGCAATCCCCTCGTATTCTTATCCCTTCTCCTCCTCCTCCGCCGGCCATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCTATTCAGAATCATCACTATCATCCTCATCATCGCCACCACCATCATTCCCATCACGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCTGACAATGGCGGATTTCATGACCCAGACACGGCGGTTGTGCAGCAAGCTCCGAAGCCTCTGGTTGAGTCCGACTATGCTGCTCCATCTAGGAGTAAACTCACCGAGGAAGTCTCCCTAAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAACTTGGCAACTACTGATCATTTGATGAGGTTCATCAACAAAGATCCCGATGGATATGTTCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGTCACTCTCAGCTAGCCAATATTTTGCGGAACTCTTCTAAGCTTATGGTTAGTGAAGACGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCCGCTGTTGGGAGGTACAAGTATTGCATGATCTCGTTGCATGTTCGTCAGCAGCTTGCTAAAGTTATATTGAATTATAATGATGCTTTACTCTTTGCCAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCTTCAACATCTAAATCCTCAAAAGCTGATGGAATGCATTACAGTAACAAGGTATACACATGGGGTATCTGCGCTTTCTGGTGCAATCTTTTTTCTCCATTAACCTCTAGCATTGTAGGGACAATGGATGATTTCCTTAAAGTCTCTGCTGTAGGGATTATCCACTATCTCCATAAGGATTGGTTCCAAGTCAAATGGGTAACGGTTCAAACCCATAGCTCATAA

Coding sequence (CDS)

ATGGCACAACATTCTTCCTCTTCCCAATCCGATCCGTCTCTTTCTCGCAACTCTTCTCTCAGTCGTCTCAACGCTCAGGCTCCTGAGTTCGTCCCCACTCGTCCCTCCACTCGTCCCGATCTACAACCACCGCAGTCCGCCCCTGGCCCCCCTCCTCCTCCTCCACCCAAGCAATCCCCTCGTATTCTTATCCCTTCTCCTCCTCCTCCGCCGGCCATGATGCATGTTTATCCTCCCCCTCCCCCGGGATCTCCCTTCCATGTTCCCATTCAGACCCCTGTCCCCGTCCCCACTCATGTCGTTTCTATTCAGAATCATCACTATCATCCTCATCATCGCCACCACCATCATTCCCATCACGTTCCTGTGCTTTATCACCCTCATAATCCTCAGTATTATGCTGACAATGGCGGATTTCATGACCCAGACACGGCGGTTGTGCAGCAAGCTCCGAAGCCTCTGGTTGAGTCCGACTATGCTGCTCCATCTAGGAGTAAACTCACCGAGGAAGTCTCCCTAAAGCTTTTGAATCAGGTGGAATATTATTTCAGTGATTTAAACTTGGCAACTACTGATCATTTGATGAGGTTCATCAACAAAGATCCCGATGGATATGTTCCTATATCGGTTGTTGCATCATTCAAGAAGATTAAGGCTCTCATTAATAGTCACTCTCAGCTAGCCAATATTTTGCGGAACTCTTCTAAGCTTATGGTTAGTGAAGACGGAAAGAAAGTCAAACGTAAGCAACCACTTTCTGAGTCAGATATGGAGGAGCTGCAATCTCGCATAGTAATTGCGGAGAACTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTTTCCGCTGTTGGGAGGTACAAGTATTGCATGATCTCGTTGCATGTTCGTCAGCAGCTTGCTAAAGTTATATTGAATTATAATGATGCTTTACTCTTTGCCAGTGTTAAGAATATTCGAACTTGTCAACCTCAAATCTCAGATAGTGGAGCTTCTTCAACATCTAAATCCTCAAAAGCTGATGGAATGCATTACAGTAACAAGGTATACACATGGGGTATCTGCGCTTTCTGGTGCAATCTTTTTTCTCCATTAACCTCTAGCATTGTAGGGACAATGGATGATTTCCTTAAAGTCTCTGCTGTAGGGATTATCCACTATCTCCATAAGGATTGGTTCCAAGTCAAATGGGTAACGGTTCAAACCCATAGCTCATAA

Protein sequence

MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSPRILIPSPPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRHHHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTWGICAFWCNLFSPLTSSIVGTMDDFLKVSAVGIIHYLHKDWFQVKWVTVQTHSS
Homology
[Close]
BLAST of Lsi03G008900 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 259.2 bits (661), Expect = 7.7e-68
Identity = 181/369 (49.05%), Postives = 229/369 (62.06%), Query Frame = 0 

Query: 5   SSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSPRILI 64
           S+SS SDPSL R+ SLSRLNA APEFVP R +                 PP  Q PR++I
Sbjct: 31  SASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT-----------------PPLPQPPRMII 90

Query: 65  PSPPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHH-YHPHHRHHHHSHH--- 124
           P PPPP  M+H+Y   P   PF+ P+  PVP+  H+V +QNHH +H  H+HHHH+ H   
Sbjct: 91  P-PPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHNRHQNQ 150

Query: 125 --VPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVE------------SDYAAPSRSK 184
             VPV  H    Q     GG  +PD    +   +   +            +  +  S++ 
Sbjct: 151 QYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTG 210

Query: 185 LTEEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQ 244
           L E+   K++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VVASFKKIKA+IN++SQ
Sbjct: 211 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 270

Query: 245 LANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAV 304
           LA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+QNLMKIFS V
Sbjct: 271 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 330

Query: 305 GRYKYCMISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKS-SKADGM 355
           G                             SVKNIRTCQPQ + SGA   ++S +K+DG 
Sbjct: 331 G-----------------------------SVKNIRTCQPQNNGSGAPPAARSAAKSDGT 348

[Close]
BLAST of Lsi03G008900 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-32
Identity = 75/153 (49.02%), Postives = 104/153 (67.97%), Query Frame = 0 

Query: 140 HDPDTAVVQQAPKPLVESDYAAPSRSK--LTEEVSLKLLNQVEYYFSDLNLATTDHLMRF 199
           HDP  A     P     +   + S SK  L++++ LK++ QVEY F+D++L   + + + 
Sbjct: 111 HDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKH 170

Query: 200 INKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDM 259
           I+KDP+GYVP+S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKVKR    ++ D 
Sbjct: 171 ISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDR 230

Query: 260 EELQSRIVIAENLPEDHCHQNLMKIFSAVGRYK 291
           EELQ R V+AENLP+DH +QNL KIF  VG  K
Sbjct: 231 EELQGRTVVAENLPDDHSYQNLEKIFGVVGNVK 263

[Close]
BLAST of Lsi03G008900 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.6e-20
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 169 EEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 228
           +E++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 229 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGR 288
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   G 
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 289 YK 291
            K
Sbjct: 221 IK 220

[Close]
BLAST of Lsi03G008900 vs. ExPASy Swiss-Prot
Match: Q28G87 (La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-12
Identity = 52/185 (28.11%), Postives = 88/185 (47.57%), Query Frame = 0 

Query: 144 TAVVQQAPKPLVESDYAAPSRS-------KLTEEVSLKLLNQVEYYFSDLNLATTDHLMR 203
           TA+    P   V+ D +   R           +++   +  QV+++F D+NL     L  
Sbjct: 2   TAIETDTPSNKVKEDESTDLRKDREKKKRSRVKQLLADIAKQVDFWFGDVNLHKDRFLRE 61

Query: 204 FINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESD 263
            I K  DGY+ IS++ASF K+K +      +A  ++NSS + ++  G K++R+ PL E  
Sbjct: 62  QIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLGEKP 121

Query: 264 MEELQSRIVIAENLPEDHCHQNLMKIFSAVG--------RYK-------YCMISLHVRQQ 307
            +++ SR V  E LP++  H  + ++F   G        RYK       +  I    ++Q
Sbjct: 122 -QDVDSRTVYVELLPKNVTHSWIERVFGKYGMVVYVSIPRYKSTGDPKGFAFIEFETQEQ 181

[Close]
BLAST of Lsi03G008900 vs. ExPASy Swiss-Prot
Match: Q7ZWE3 (La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-12
Identity = 48/152 (31.58%), Postives = 83/152 (54.61%), Query Frame = 0 

Query: 143 DTAVVQQAPKPLVESDYAAPSRSKLTEEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDP 202
           DTA    + K     D     RS++ + +S  +  QVE++F D+NL     +   I +  
Sbjct: 19  DTACADLSEK----KDNEKKKRSRVKQLLS-DVKKQVEFWFGDVNLHKDRFMKSIIEQSR 78

Query: 203 DGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQS 262
           DGY+ I+V+ +F ++K L      +A  L+NS+ + V+++G +++RK+PL E+  +++ S
Sbjct: 79  DGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDS 138

Query: 263 RIVIAENLPEDHCHQNLMKIFSAVGRYKYCMI 295
           R V  E LP+   H  L ++FS  G   Y  I
Sbjct: 139 RTVYVELLPKTVTHIWLERVFSKCGHVVYISI 164

[Close]
BLAST of Lsi03G008900 vs. ExPASy TrEMBL
Match: A0A0A0K7B6 (Lupus la ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_7G224890 PE=4 SV=1)

HSP 1 Score: 600.9 bits (1548), Expect = 4.0e-168
Identity = 339/415 (81.69%), Postives = 345/415 (83.13%), Query Frame = 0 

Query: 1   MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSP 60
           MAQHSSSSQSD SLSRNSSLSRLNAQAPEFVPTRPSTR DLQ        P PPPPKQSP
Sbjct: 1   MAQHSSSSQSDLSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQ--------PLPPPPKQSP 60

Query: 61  RILIPS--PPPPPAMMHVYPPPPPGSPFHVPIQ-TPVPVPTHVVSIQNHHYHPHHRHHHH 120
           RILIPS  PPPPPAMMH YPPPPPGSPFHVPIQ TPVPVPTHVVSIQNH YHPHHRHHHH
Sbjct: 61  RILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSIQNHPYHPHHRHHHH 120

Query: 121 SHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLKLLN 180
           SHHVPVLYHPHNPQYYADNGGFHDPDT VVQ A KPLVESDYAAPSRSKLT+EVS KLLN
Sbjct: 121 SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLVESDYAAPSRSKLTDEVSQKLLN 180

Query: 181 QVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKL 240
           QVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILRNSSKL
Sbjct: 181 QVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILRNSSKL 240

Query: 241 MVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMISLH 300
           +VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG          
Sbjct: 241 LVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG---------- 300

Query: 301 VRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVY----T 360
                              SVKNIRTCQPQISDSGASSTSKS+KADGMHYSNKVY     
Sbjct: 301 -------------------SVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKVYLFAAA 360

Query: 361 WGICAFWCNLFSPLTSSIVGTMDDFLKVSAVGIIHYLHKDWFQVKWVT-VQTHSS 408
           W I  F CN FSPLTSSI GTM DFLKVSAV I H  H DWFQ+KW T VQTH+S
Sbjct: 361 WVIRDFCCNPFSPLTSSIAGTMHDFLKVSAVRIFHNFHNDWFQIKWGTPVQTHNS 378

[Close]
BLAST of Lsi03G008900 vs. ExPASy TrEMBL
Match: A0A6J1I3E0 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 5.4e-149
Identity = 301/360 (83.61%), Postives = 312/360 (86.67%), Query Frame = 0 

Query: 1   MAQHSSS-----SQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPP 60
           MAQHSSS     SQSDPSLSRNSSLSRLNAQAPEFVPTRPS+R DLQPP  +   P PPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPS-PPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRH 120
           PKQSPRILIPS PPPPPAMMHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QNHHYH HHRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120

Query: 121 HHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLK 180
           HHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQQA KP VE+DYAAPSRSKLTE+VSLK
Sbjct: 121 HHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLTEDVSLK 180

Query: 181 LLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 240
           LLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS
Sbjct: 181 LLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 240

Query: 241 SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMI 300
           SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG       
Sbjct: 241 SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG------- 300

Query: 301 SLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTW 355
                                 SVKNIRTCQPQISDSGASSTSKS+KADGMHYS+K++ +
Sbjct: 301 ----------------------SVKNIRTCQPQISDSGASSTSKSAKADGMHYSSKLHAF 330

[Close]
BLAST of Lsi03G008900 vs. ExPASy TrEMBL
Match: A0A6J1GLH8 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 1.3e-147
Identity = 302/361 (83.66%), Postives = 313/361 (86.70%), Query Frame = 0 

Query: 1   MAQHSSS-----SQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDL-QPPQSAPGPPPPP 60
           MAQHSSS     SQSDPSLSRNSSLSRLNAQAPEFVPTRPS+R DL QPP SA G P PP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAG-PAPP 60

Query: 61  PPKQSPRILIPS-PPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHR 120
           PPKQSPRILIPS PPPPPAMMHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QNHHYH HHR
Sbjct: 61  PPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHR 120

Query: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSL 180
           HHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQQA KP VE+DYAAPSRSKL E+VSL
Sbjct: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVSL 180

Query: 181 KLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN 240
           KLLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN
Sbjct: 181 KLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN 240

Query: 241 SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCM 300
           SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG      
Sbjct: 241 SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG------ 300

Query: 301 ISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYT 355
                                  SVKNIRTCQPQISDSGASST+KS+KADGMHYS+K++ 
Sbjct: 301 -----------------------SVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHA 330

[Close]
BLAST of Lsi03G008900 vs. ExPASy TrEMBL
Match: A0A5A7TGF6 (La-related protein 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G003570 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 6.6e-147
Identity = 297/357 (83.19%), Postives = 306/357 (85.71%), Query Frame = 0 

Query: 1   MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSP 60
           MAQHSSSSQSD SLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ        P PPPPKQSP
Sbjct: 1   MAQHSSSSQSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPPPKQSP 60

Query: 61  RILIPS--PPPPPAMMHVYPPPPPGSPFHVPIQ-TPVPVPTHVVSIQNHHYHPHHRHHHH 120
           RILIPS  PPPPPAMMH YPPPPPGSPFHVPIQ TPVPVPTHVVS+QNH YHPHHRHHHH
Sbjct: 61  RILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHHRHHHH 120

Query: 121 SHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLKLLN 180
           SHHVPVLYHPHNPQYYADNGGFHDPDT VVQ A KPL+ESDYAAPSRSKLT+EVS KLLN
Sbjct: 121 SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVSQKLLN 180

Query: 181 QVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKL 240
           QVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILRNSSKL
Sbjct: 181 QVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILRNSSKL 240

Query: 241 MVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMISLH 300
           +VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG          
Sbjct: 241 LVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG---------- 300

Query: 301 VRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTW 355
                              SVKNIRTCQPQISDSGASSTSKS+KADGMHYSNK++ +
Sbjct: 301 -------------------SVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAF 320

[Close]
BLAST of Lsi03G008900 vs. ExPASy TrEMBL
Match: A0A1S3BHP7 (la-related protein 6B isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 6.6e-147
Identity = 297/357 (83.19%), Postives = 306/357 (85.71%), Query Frame = 0 

Query: 1   MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSP 60
           MAQHSSSSQSD SLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ        P PPPPKQSP
Sbjct: 1   MAQHSSSSQSDLSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQ--------PLPPPPKQSP 60

Query: 61  RILIPS--PPPPPAMMHVYPPPPPGSPFHVPIQ-TPVPVPTHVVSIQNHHYHPHHRHHHH 120
           RILIPS  PPPPPAMMH YPPPPPGSPFHVPIQ TPVPVPTHVVS+QNH YHPHHRHHHH
Sbjct: 61  RILIPSPPPPPPPAMMHGYPPPPPGSPFHVPIQTTPVPVPTHVVSLQNHPYHPHHRHHHH 120

Query: 121 SHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLKLLN 180
           SHHVPVLYHPHNPQYYADNGGFHDPDT VVQ A KPL+ESDYAAPSRSKLT+EVS KLLN
Sbjct: 121 SHHVPVLYHPHNPQYYADNGGFHDPDTPVVQPAQKPLLESDYAAPSRSKLTDEVSQKLLN 180

Query: 181 QVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKL 240
           QVEYYFSDLNLATTDHLMRF+NKDPDGYVPISVVASFKKIKALINSH QLANILRNSSKL
Sbjct: 181 QVEYYFSDLNLATTDHLMRFVNKDPDGYVPISVVASFKKIKALINSHFQLANILRNSSKL 240

Query: 241 MVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMISLH 300
           +VSEDGKKVKRKQP SESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG          
Sbjct: 241 LVSEDGKKVKRKQPFSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG---------- 300

Query: 301 VRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTW 355
                              SVKNIRTCQPQISDSGASSTSKS+KADGMHYSNK++ +
Sbjct: 301 -------------------SVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAF 320

[Close]
BLAST of Lsi03G008900 vs. NCBI nr
Match: XP_038888029.1 (la-related protein 6B [Benincasa hispida])

HSP 1 Score: 575.1 bits (1481), Expect = 4.8e-160
Identity = 314/354 (88.70%), Postives = 318/354 (89.83%), Query Frame = 0 

Query: 1   MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSP 60
           MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTR DLQPPQSAPGPPPPPPPKQSP
Sbjct: 1   MAQHSSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRSDLQPPQSAPGPPPPPPPKQSP 60

Query: 61  RILIPSPPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRHHHHSHH 120
           RILIPSPPPPPAMMHVY PPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRHHHHSHH
Sbjct: 61  RILIPSPPPPPAMMHVY-PPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRHHHHSHH 120

Query: 121 VPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLKLLNQVE 180
           VPVLYHPHNPQYYADNGGFHDPDTAVVQQ  KPLVESDYAAPSRSKLTEEVS KLLNQVE
Sbjct: 121 VPVLYHPHNPQYYADNGGFHDPDTAVVQQPQKPLVESDYAAPSRSKLTEEVSQKLLNQVE 180

Query: 181 YYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVS 240
           YYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVS
Sbjct: 181 YYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVS 240

Query: 241 EDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMISLHVRQ 300
           EDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSA G             
Sbjct: 241 EDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAAG------------- 300

Query: 301 QLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTW 355
                           SVKNIRTCQPQISDSGASSTSKS+KADGMHYSNK++ +
Sbjct: 301 ----------------SVKNIRTCQPQISDSGASSTSKSAKADGMHYSNKLHAF 324

[Close]
BLAST of Lsi03G008900 vs. NCBI nr
Match: XP_022971972.1 (la-related protein 6B-like [Cucurbita maxima])

HSP 1 Score: 537.3 bits (1383), Expect = 1.1e-148
Identity = 301/360 (83.61%), Postives = 312/360 (86.67%), Query Frame = 0 

Query: 1   MAQHSSS-----SQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPP 60
           MAQHSSS     SQSDPSLSRNSSLSRLNAQAPEFVPTRPS+R DLQPP  +   P PPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPS-PPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRH 120
           PKQSPRILIPS PPPPPAMMHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QNHHYH HHRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120

Query: 121 HHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLK 180
           HHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQQA KP VE+DYAAPSRSKLTE+VSLK
Sbjct: 121 HHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLTEDVSLK 180

Query: 181 LLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 240
           LLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS
Sbjct: 181 LLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 240

Query: 241 SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMI 300
           SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG       
Sbjct: 241 SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG------- 300

Query: 301 SLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTW 355
                                 SVKNIRTCQPQISDSGASSTSKS+KADGMHYS+K++ +
Sbjct: 301 ----------------------SVKNIRTCQPQISDSGASSTSKSAKADGMHYSSKLHAF 330

[Close]
BLAST of Lsi03G008900 vs. NCBI nr
Match: XP_023553969.1 (la-related protein 6B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 536.2 bits (1380), Expect = 2.5e-148
Identity = 300/360 (83.33%), Postives = 312/360 (86.67%), Query Frame = 0 

Query: 1   MAQHSSS-----SQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPP 60
           MAQHSSS     SQSDPSLSRNSSLSRLNAQAPEFVPTRPS+R DLQPP  +   P PPP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQPPPHSAAGPAPPP 60

Query: 61  PKQSPRILIPS-PPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHRH 120
           PKQSPRILIPS PPPPPAMMHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QNHHYH HHRH
Sbjct: 61  PKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHRH 120

Query: 121 HHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSLK 180
           HHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQQA KP VE+DYAAPSRSKLTE+VSLK
Sbjct: 121 HHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLTEDVSLK 180

Query: 181 LLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 240
           LLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS
Sbjct: 181 LLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRNS 240

Query: 241 SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCMI 300
           SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG       
Sbjct: 241 SKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG------- 300

Query: 301 SLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYTW 355
                                 SVKNIRTCQPQISDSGASST+KS+KADGMHYS+K++ +
Sbjct: 301 ----------------------SVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHAF 330

[Close]
BLAST of Lsi03G008900 vs. NCBI nr
Match: KAG6571819.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 532.7 bits (1371), Expect = 2.7e-147
Identity = 302/361 (83.66%), Postives = 313/361 (86.70%), Query Frame = 0 

Query: 1   MAQHSSS-----SQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDL-QPPQSAPGPPPPP 60
           MAQHSSS     SQSDPSLSRNSSLSRLNAQAPEFVPTRPS+R DL QPP SA G P PP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAG-PAPP 60

Query: 61  PPKQSPRILIPS-PPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHR 120
           PPKQSPRILIPS PPPPPAMMHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QNHHYH HHR
Sbjct: 61  PPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHR 120

Query: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSL 180
           HHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQQA KP VE+DYAAPSRSKL E+VSL
Sbjct: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVSL 180

Query: 181 KLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN 240
           KLLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN
Sbjct: 181 KLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN 240

Query: 241 SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCM 300
           SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG      
Sbjct: 241 SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG------ 300

Query: 301 ISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYT 355
                                  SVKNIRTCQPQISDSGASST+KS+KADGMHYS+K++ 
Sbjct: 301 -----------------------SVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHA 330

[Close]
BLAST of Lsi03G008900 vs. NCBI nr
Match: XP_022952369.1 (la-related protein 6B-like [Cucurbita moschata])

HSP 1 Score: 532.7 bits (1371), Expect = 2.7e-147
Identity = 302/361 (83.66%), Postives = 313/361 (86.70%), Query Frame = 0 

Query: 1   MAQHSSS-----SQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDL-QPPQSAPGPPPPP 60
           MAQHSSS     SQSDPSLSRNSSLSRLNAQAPEFVPTRPS+R DL QPP SA G P PP
Sbjct: 1   MAQHSSSSSLSPSQSDPSLSRNSSLSRLNAQAPEFVPTRPSSRSDLQQPPHSAAG-PAPP 60

Query: 61  PPKQSPRILIPS-PPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHHYHPHHR 120
           PPKQSPRILIPS PPPPPAMMHVYPPPPPGSPFHVPIQ+PVPVPTHVVS+QNHHYH HHR
Sbjct: 61  PPKQSPRILIPSPPPPPPAMMHVYPPPPPGSPFHVPIQSPVPVPTHVVSLQNHHYHRHHR 120

Query: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVESDYAAPSRSKLTEEVSL 180
           HHHHSHHVPVLYHPHNPQYYADNGGFHDPDT VVQQA KP VE+DYAAPSRSKL E+VSL
Sbjct: 121 HHHHSHHVPVLYHPHNPQYYADNGGFHDPDT-VVQQAQKPQVETDYAAPSRSKLAEDVSL 180

Query: 181 KLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN 240
           KLLNQVEYYFSDLNL TTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN
Sbjct: 181 KLLNQVEYYFSDLNLTTTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLANILRN 240

Query: 241 SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGRYKYCM 300
           SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG      
Sbjct: 241 SSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVG------ 300

Query: 301 ISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKSSKADGMHYSNKVYT 355
                                  SVKNIRTCQPQISDSGASST+KS+KADGMHYS+K++ 
Sbjct: 301 -----------------------SVKNIRTCQPQISDSGASSTAKSAKADGMHYSSKLHA 330

[Close]
BLAST of Lsi03G008900 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 259.2 bits (661), Expect = 5.4e-69
Identity = 181/369 (49.05%), Postives = 229/369 (62.06%), Query Frame = 0 

Query: 5   SSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSPRILI 64
           S+SS SDPSL R+ SLSRLNA APEFVP R +                 PP  Q PR++I
Sbjct: 31  SASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT-----------------PPLPQPPRMII 90

Query: 65  PSPPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHH-YHPHHRHHHHSHH--- 124
           P PPPP  M+H+Y   P   PF+ P+  PVP+  H+V +QNHH +H  H+HHHH+ H   
Sbjct: 91  P-PPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHNRHQNQ 150

Query: 125 --VPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVE------------SDYAAPSRSK 184
             VPV  H    Q     GG  +PD    +   +   +            +  +  S++ 
Sbjct: 151 QYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTG 210

Query: 185 LTEEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQ 244
           L E+   K++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VVASFKKIKA+IN++SQ
Sbjct: 211 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 270

Query: 245 LANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAV 304
           LA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+QNLMKIFS V
Sbjct: 271 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 330

Query: 305 GRYKYCMISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKS-SKADGM 355
           G                             SVKNIRTCQPQ + SGA   ++S +K+DG 
Sbjct: 331 G-----------------------------SVKNIRTCQPQNNGSGAPPAARSAAKSDGT 348

[Close]
BLAST of Lsi03G008900 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 258.5 bits (659), Expect = 9.3e-69
Identity = 181/366 (49.45%), Postives = 227/366 (62.02%), Query Frame = 0 

Query: 5   SSSSQSDPSLSRNSSLSRLNAQAPEFVPTRPSTRPDLQPPQSAPGPPPPPPPKQSPRILI 64
           S+SS SDPSL R+ SLSRLNA APEFVP R +                 PP  Q PR++I
Sbjct: 31  SASSSSDPSLLRSLSLSRLNAGAPEFVPGRTT-----------------PPLPQPPRMII 90

Query: 65  PSPPPPPAMMHVYPPPPPGSPFHVPIQTPVPVPTHVVSIQNHH-YHPHHRHHHHSHH--- 124
           P PPPP  M+H+Y   P   PF+ P+  PVP+  H+V +QNHH +H  H+HHHH+ H   
Sbjct: 91  P-PPPPHGMLHMYHHQP---PFNTPVLGPVPIQPHLVPVQNHHPHHRFHQHHHHNRHQNQ 150

Query: 125 --VPVLYHPHNPQYYADNGGFHDPDTAVVQQAPKPLVE------------SDYAAPSRSK 184
             VPV  H    Q     GG  +PD    +   +   +            +  +  S++ 
Sbjct: 151 QYVPVRNHGEY-QQRGGVGGEQEPDLVSKKNDRRDHSKRESKNDQVTETGASVSIDSKTG 210

Query: 185 LTEEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQ 244
           L E+   K++NQVEYYFSDLNLATTDHLMRFI KDP+GYVPI VVASFKKIKA+IN++SQ
Sbjct: 211 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 270

Query: 245 LANILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAV 304
           LA +L+NS+KL VSEDGKKV+R  P++ES +EELQSRI++AENLPEDHC+QNLMKIFS V
Sbjct: 271 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 330

Query: 305 GRYKYCMISLHVRQQLAKVILNYNDALLFASVKNIRTCQPQISDSGASSTSKS-SKADGM 352
           G                             SVKNIRTCQPQ + SGA   ++S +K+DG 
Sbjct: 331 G-----------------------------SVKNIRTCQPQNNGSGAPPAARSAAKSDGT 345

[Close]
BLAST of Lsi03G008900 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 142.1 bits (357), Expect = 9.7e-34
Identity = 75/153 (49.02%), Postives = 104/153 (67.97%), Query Frame = 0 

Query: 140 HDPDTAVVQQAPKPLVESDYAAPSRSK--LTEEVSLKLLNQVEYYFSDLNLATTDHLMRF 199
           HDP  A     P     +   + S SK  L++++ LK++ QVEY F+D++L   + + + 
Sbjct: 111 HDPAAAFYISNPAVQFPASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKH 170

Query: 200 INKDPDGYVPISVVASFKKIKALINSHSQLANILRNSSKLMVSEDGKKVKRKQPLSESDM 259
           I+KDP+GYVP+S +AS KKIKAL ++H  ++  LR+SSKL+VSEDGKKVKR    ++ D 
Sbjct: 171 ISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDR 230

Query: 260 EELQSRIVIAENLPEDHCHQNLMKIFSAVGRYK 291
           EELQ R V+AENLP+DH +QNL KIF  VG  K
Sbjct: 231 EELQGRTVVAENLPDDHSYQNLEKIFGVVGNVK 263

[Close]
BLAST of Lsi03G008900 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-21
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 169 EEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 228
           +E++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 229 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGR 288
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   G 
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 289 YK 291
            K
Sbjct: 221 IK 220

[Close]
BLAST of Lsi03G008900 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-21
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 

Query: 169 EEVSLKLLNQVEYYFSDLNLATTDHLMRFINKDPDGYVPISVVASFKKIKALINSHSQLA 228
           +E++ K++ QVEYYFSD NL T   L+  + ++  G+VPIS +A+F K+K L   H+ + 
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 229 NILRNSSKLMVSEDGKKVKRKQPLSESDMEELQSRIVIAENLPEDHCHQNLMKIFSAVGR 288
           + L+ SS L+VS D KKVKR  PL E  + + +   V+ ENLPEDH ++N+ +IF   G 
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPE--IRDPKIFTVLVENLPEDHSNENIREIFGKAGS 220

Query: 289 YK 291
            K
Sbjct: 221 IK 220

The following BLAST results are available for this feature:
BLAST of Lsi03G008900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O805677.7e-6849.05La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2[more]
Q9LHL31.4e-3249.02La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1[more]
Q94A384.6e-2043.44La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1[more]
Q28G874.6e-1228.11La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1[more]
Q7ZWE36.0e-1231.58La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1[more]
BLAST of Lsi03G008900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7B64.0e-16881.69Lupus la ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_7G224890 PE=4 SV=1[more]
A0A6J1I3E05.4e-14983.61la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111470630 PE=4 SV=1[more]
A0A6J1GLH81.3e-14783.66la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV... [more]
A0A5A7TGF66.6e-14783.19La-related protein 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S3BHP76.6e-14783.19la-related protein 6B isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV... [more]
BLAST of Lsi03G008900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888029.14.8e-16088.70la-related protein 6B [Benincasa hispida][more]
XP_022971972.11.1e-14883.61la-related protein 6B-like [Cucurbita maxima][more]
XP_023553969.12.5e-14883.33la-related protein 6B-like [Cucurbita pepo subsp. pepo][more]
KAG6571819.12.7e-14783.66La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022952369.12.7e-14783.66la-related protein 6B-like [Cucurbita moschata][more]
BLAST of Lsi03G008900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43970.15.4e-6949.05RNA-binding protein [more]
AT2G43970.29.3e-6949.45RNA-binding protein [more]
AT3G19090.19.7e-3449.02RNA-binding protein [more]
AT5G46250.13.2e-2143.44RNA-binding protein [more]
AT5G46250.23.2e-2143.44RNA-binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 178..195
score: 50.51
coord: 257..273
score: 21.39
coord: 235..248
score: 38.31
coord: 204..219
score: 32.95
IPR006630La-type HTH domainSMARTSM00715lacoord: 169..249
e-value: 1.8E-35
score: 133.8
IPR006630La-type HTH domainPFAMPF05383Lacoord: 175..233
e-value: 2.3E-18
score: 66.0
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 165..256
score: 25.198769
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 163..253
e-value: 3.0E-26
score: 93.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..78
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 315..353
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 100..291
NoneNo IPR availablePANTHERPTHR22792:SF112LA-RELATED PROTEIN 6B-LIKEcoord: 315..353
coord: 100..291
NoneNo IPR availableCDDcd08033LARP_6coord: 174..248
e-value: 1.60923E-36
score: 126.243
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 169..259

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008900.1Lsi03G008900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005634 nucleus
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003723 RNA binding