Lsi03G008890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G008890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionla-related protein 6B-like
Locationchr03: 15834423 .. 15846351 (-)
RNA-Seq ExpressionLsi03G008890
SyntenyLsi03G008890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTTTTTTCATTCTTGTAAAGGGAATTCAGATGTAAAAGAAGTTTCATAATTTTTCAGGTTGCAGAATTAAATGATGAAGGGAATTGGAGAAATGCACTCAGGCTTCGTTTGATGCTTTCAAGCATGGTACTTAATCTAAGACCAATATACTTTTTCCATGTGTTTTTTTTTTTTTTGAAAAGGAAGTAAGACTTTTCATTGACAAAATGAAAATAACTAAGGCTCAAAGTACAATGATACAAAAATAAAGCAATTACATCCATTACAACCAAATACAACAAATAAAAAACTCATTAAAGAATCTGCATCCCAATGATCAAATACCAAATCATGACCGAATCGGCAAAAAGTTAATTACATTTTCATTTCTTTCGAAGGTCTACCCGGTTATGAACACTCACTAGCCCAACGAGTAAAATTAAAGACGTCTCCAAATCACCAAGATTCAACACAATAATCTGACAAAGACATCAAATCAGGCCACAAAACTTCTTTCCATGTAATCATCTAGACTGTAGACATTAGTTACCCAACCAAACTCCTTACAATGAGATGTACGCTACAAGGATAAAGAATAACCTCCTGTAAGAGTTTCTATCACCAAAAACTTGACAAAGGATCATCCAATTAAAAGGCCTCCTGATTTACCAAAGTACTATACAAAAGGCCATCCAATTTCCTTGCGACTCCACAAGGAGTTGATGTGACTTAGGTCAAAATCCTCCCTTTTATCTTCTGAATTGACTCTGAAGAAATCTTTTCAAACAAGTTCTCTTGCATTGAATATTGAATTTTACTGATAATGAGTATCCCCTTTAAAAGTTTCTAAAACTGTCAGCTTGCTTCCAACCCACATTACCCAAAGCAAATGATTCCACAACTGTCCAACCAAATTCATTTGAACTCCATCTATAATCGAGAAAATTAACGTTGAAATCCTCTCTTTTGTTTCCTGAATTAAAAACCATGGGTTCTGATTTTGAAAAAACTTTTTAATGCAATACTCTTAGCTTTGTCTCCAAGACCTCGATTTCCCCTTGATAATTTTCATCCTTACAAAATAGGCTTACAGTCTGAGATGAATGGTAAGCTTTACATAATTGTAGACCACAAAATTCAACAATGGAAGAGAATTTGGAAGGAATTTGAGATGGAGACAAGAGAGTGAAACTTACATTTGGAATCTGATCATCCTTCCCCTCATTAGACCTTTGAAATAAGTGAGCAAAAGTTTCTCCATGATCACTATTAGTAAACTTTTCATCTGAATCTGAAACCAATATGTGAACACAAGCTCTTCGTTGCTCACGGTAACAACCGAATCATCATCTTAATCATCTTGGATTGAGGGGCTCTTTAAATGGAAACGGCAAGGCACTCTCCGAATAAATTGAATCTTTGAATCTAGAAGAGAGAGTCGAATGCCTAAAGTCTTGTGAATGGGAATGAATCTTTGAAGTGTTAAGACAAGGCTTTGACGAAACTAAAGCTGGCACTTGTGCACAAGTACAACCTTCTTCATTGAGATAAGAACTATACAACCTTTTTTAATGAGATAAGAACTACCTTTTAGTGCCTTAGATACATGAATTGAAGCACCTTTTCGAGAATAATGCTTAGGAAAAGCTGGAATAAATTTTTCGTCATTCATTTTACCTATTTTAGCCTCTTTAAATTCCGACAGGATAAGTGAGCTTACTCTTCCCGTTCCGTAGAGAATGATACAAATACTAAATCAGGATGAAAAATTGTGTACTAGTTCCGACTTTTTACATCTTTTGCTTTATATATGCAAAAATGTGTACTAGTTCCAAATCCTAAATTTTAAGCTTTCTTCTTGATTTGTGTTCTCTCATTATTTTGTTTGTGTGTGCATAATTAAAAATTCATTATCATTCACAGTCAAAATCTGCTCCAGCTCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATATCTCTGAACAACCGCGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTCGATGTTCATCCACATGAACAAGTACAATTGAACTCCCTCTAACCTTCTTTAGATTCCTGGACGCTCTAAAATTAATGCACTTTCTCTTTATTTTTTTCTTAAATTATTTTTTAATGGAATGAGTGAAGAGAAGGACCGATTATTAGTATGAAATCGAGGATATTAGGAATGATAAAAGAGAAATTATGTAGCCATCAAGAAAAGTAAGGAAAAATGTTCATAGGGCGTTAGGAGTGCCGAAAGTATATTGAGGGAAAGAGTAGATAATTCTTAAAAGATAAATTGTTCAAAATGAATTTTGAGTCGGCCCTAAGGGGGCAGTCAGTTTAAGGTGGGAGGCTTGAGGATAACAAAAAGAATTTTGAGGCTTATGCCTTGAGCCTTGCTTTGGGAGAGGTTCAAATTTTTAGCCTCGAAACTGGCACTGTCGTTGTATTGCAAAAGCCTCACGCCTCTATGAGAATGTTTTGAGCCTTTGAGTCTTTATGCCTCAAGTAATGGTTAGAAGAATAACAATAATTTTCTGCTTACTATTAAAAAATATGAAAGTTCTTTTATGTAATGAATGCTAATATACTTTGAATTGTGGTAATTTTATCTGTTAATACTGGTAATACTACTAAAAGAACATTGAAGAAAAACATTGGCTCGAAACAACCATATTTCCCTTGTATGACTTAGTAGGCACACTAAAGCCTTCATCAATCATTACCTGAGATATTCTCTTAAGACTGTATTTGAAAAACTGAAGAATGATAGATCTCCATGATCCACTCGAGGTGGATCCAAGGGCAGATATCCCCAAAGTGAAGCGAATCATTATTAGGTTAAGTTCTATGCTTTTATACTTATTATGATGGAAGTTAAAAGTTGTTGTATTCGTAATACATTCTTTTGTATCTAGCATGAAGAGAACGGGGTTTTCTTGGAAGATATGAGTCATGAGCAGAAAATCTTCTTTTCTTCCTCATCTTACATTGGTTTGAAGCAGGTTTGATTGAGTTATTGCATCCTCTAGAACGGGGTTTTCTTGGAAGATAAGAGTCATGAGCAGAAATCTTCTTTTCTTCCTCATCTTTACATTGGTTTGAAGCAGGTTTGATTGAGTTATTGCATCCTCTAGTAACATCACTCTTTTAAAAGAAAGTTAGAAATGAGTTTGGGGCTATTTATTTATCTAGGTTCCAATCTTCTTATGGTTGGTTTCTTGAATGTGTCGTTTGGCATGCTATTGGAGGAAGGAAGAATACTCATGTTCTAGCTGATATTGATAAGGTTGGTTAGTTTTTTGGGAAACGGTGAGAGGTTTTCTCCTGGAATTTGAAGGGATGAATCATTTACAATTCAATTCTTCTTCCAAGGAATAGGAAGTCGAAAAGTCTTGTGAGAAAAAGAAGTTTGACAGGTTATCTATGAGAAGTTATGTGGATGCGGTTGGTCAAAAATCCAATTCATGTTTGATCAACGTTGGTTCATGTGTTGCAACTTGTACTTATTCTTTAAGGGAGTGTTTGGGGCAAGGAGTGGAGTTGTGAACTCCAAGGATGTGTTTGGTCCAAGGAGTTTGGAAGTAGGAGTGGGGAAGTAGGGAGTTGTAAACTCCACTCCTTTTTTGGCTCAAGGAGTTGGTTGGTCCCACTACTAAAAAATATCAATTTTATATCTTATCAATTCCTTACCTTGTGGGCTCCAAGAGCTCACAACTCCCTAGACTTCATAACTCCTTTACGTCCCTATTCCACTCCTTACCCCAAACACCCCTAAGGAGTTGTAAAATCTAGGGAGTTGTGAATCCCTGGAACCTGGTATAAGAAATTAATAAGACATAAAATTGATGTTTTTTAGTCGTGGGACCCACAGATATCCTTGGGCCAATCAAGGAGTGGAGTTTACAACTCCTCCAACTCTTTGATCCAAACACCCCCTAAGAATGTTCTGGTCTAGAAAAGTATTTTTTTTTGGGGGGGGGGGGGGGGGGGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGTGAGCCATCTGTTGTTGTTACCAAATTGTTTGCTCATTATTCTTGGAAGGAGGTTAAGTATGCATTAGAAGAATACTATGAGGCCCCATATCTCTATTTATCCCTTCATGGATGATAAGACCTTAATCCAGTTAGGTGATGATTTCTCGAAGATAAATTTTGATGGAAAATGGAGGCTTTTCTGCTCAGGATAGATATGAAAATAGTATCATGGAGTGGAATACCTGTGGCCTCTTGTAGCCTATTACTTTTAGGTTTCTGAAGGATGAAGAGCTGCTGGATTTTCGGAACTTATTGGTTGTCTTAGAGGGTCAAAAAGTGGTTGAAAGACGAGATACAAGAAGTTGAAAGTTGGAAGCTTCAGATCAGAGCTGTACGAAGCTTTGTAGAAATCAAGCTGCCCAGGAAGAGTTAACATCATAATTTGGGTGATGATTTATGGAGGTCTTGATTGCTCTAAGTATCTTCAAAGAAAGCTCCCAAGCCATTCGTTAATGTCCTCAATTTCCCTTTGTGTATGGAAAATGTGGAAGACTCCCAGCACATATTCTCTTTGATTGTAGCTTCTCTAAATATTTTGGAGGAAATTGTTTTCTATGTTTAATCTGGAACGGGTGTGGAGCATTGTTTTCAAGGAGAATGTAATTCAACTTTTAGTGGGGCCTTCGTTAAAAGCTATCCCTCACCTTTTATGGGTGGATGGAGTGATTCTCTCAAAATTTGGTTTGCAAGGAACCAACAAATTTTTCAAGACTAGTCCCTTCATTGGTAATTGTTATGAGATTGCTCGAGTCAAAGCTTCTTCATGGTGTTCTCGTTCCAAATTATTTGCTGAATACTCTATTTAAGATATTAGTTTAAATTGGAGTGCATTTCTTTCATCTTAGCTATGTTTGTTTGTTTTACTATATCATTGGTCTATTTATGTCATTGTATTTTCATTTGTTGAGTCCTTTTGTTTCATATATGTTACTTTGAGCATTAGACTCATTTCATTATTTCAATAAAAAGACTTGTTTCCATTTAAACACAAGAGAATACTTGTGGTCTTGGGGAGAAATCTAAGTGAGTTGCATTGAGTAAATTCCTTCAAAATAGAAATCCATGTGACCTTAGTTCAGGAAACAAAAAGACTTGATTTTGATCTCTCCTTTTTCTTTTCTTTCTTTCTTTCTTTTTTTTGGAACAAGAGATGGAAATTTCCATTGAAAAGATGTAAAGAGTGACTATTGCTCTTTTGGGTACAAATTCCAAAATGAGTAAAAAGAGGAAAAAAACATAAAAATATAAAGATTCCACAAGCCATAACAAATGACTACTTAAAAACTTAACTAAGAACTAATACGAAGGATATGAACCTTGAGTTGCCCATAGAAGTTGGAACAGATGTTTGAAAGCTCCATCGAGTGTTGCTGAAAATTGCAATCTTTCGGTAGAGGATCTTTATTTAACAAAGAAACTTCTCCTTCTGAATTCAAACAAAATAAAATTAGAAAGAAAAAGAGCCCTTGAAGATAAAATTCTCGCATCTTTGAATGGGATATATAGAGGAAAAATGCTAAAAAAAACTCTTGAACTTCCCAAAAAGATTCAAAATTTTTTACTAATGCAGTATCAAATGAAACAATTGAGAGAAAATTCGTTTCTAAGATTGTTGCGAAAGTTTTAGCGAGAGATTGAAGAGGGTTATACCAAGTATTATTTCTCATTCTCAAAATGCTTTTATTGGCGAAAGATAGATTCTTGATCTAGTCCTTATGGCTAATGAAGCATCAAAAGAATATAGATCCAAGAAGTAGAAAGGATGGATCCTTAAGCTTGATTTAGAAAAAGGCTTTGACCGGGTGGATTAGGATTTCCTTGAGAAGGTGCTATTTCTCAAAGGTTTGAATTCCAAGTGGATTGAATGGATTAACGTCAATGTTTAGGATCCAAATTTTTTAAGAAAGATTAATGGTCATCCTCGATGGAGAATTCTTGCTTCTAGAGAACTTCTGCAAGGGATCCACTTTCTTCCTTCCTATTTCTTTTGGTAAGTGAGGGTTTAAGTGCTCTTATTTCTCTTATTTATGAGAATGGGGGTTTTGAAGGTTTTTTTTTTTTGTGGTCAAGAATAAGGTGCATATCTCGATTCTTTCGTTGGCACATAATGCATTTCTATTTTGTAAATATGATGATGGTATGTTGGATAATTTCATTAAAACCATTGAGCTTTTTGAATGGTGTTCTGGTCAAAAGGTGAATTGGGAAAAATCTGCCTTCTATGGTGTGTAGAGAATGTTGATAAAGACAAGCTGTATTCCAGTTCCTCTCGGTTTAATTGTAAAGTTGAAAAAATTCCTTTTATGTATCTCGGTTTACCCCTTGGTGGATATTTGGAAAATGTTTCTTTTTGGCAGCCCGTTATTGACAAGATTCAGAAGAAGTTGGATAGATAGAAAAGATTCAATTTATCTCGAGGTGGAAGACTTACTTTGTGTAATGTTGTTTTGTCAAATATTTCTGTTTATTATGTCTCCCCCGGATTAATGGCTCTCCTTTGGAATCATGCTACCCATGCCTTTTCAACATTGCTTCCTTGCCCAATGGTTTGATTTTTGACCATTGGGATAAAGCTACAGTTCATGGAATGTTCCTTTCAAAGGTTATTAAAGAATGCTGAAACTTTGAATTCCAGTAGTCATTAGGTAAATTTTTTTGCCAAGTCTCGTTCAAAACACTTGGCTGCTTCCACTCCATGAAAATTTCCAGCAGTCATTGGGTAAATTTTTTGTGAAGTCTCGTTCGAAACACTGGGGTTGCTTCCACTCCATGGATAAGGTGGTCTATTCTGCTTTGTGGAAATCAAAATGCCCCAAACGTATAGTGTTCTCATTTGGGTGACGACTGATGTTCATAGTTTTTGCATAATTGTTTTGCCACTCTTCTTTGAAAGCTACCATCACATTCTTTATTTCCATCTATTTGCTCTTTTGGCCAATAGTGTGGATTTGCATCATATCTTATTTGATTGTATCTTTTCTAGACATTGTTGGTGGCGATTATTTTCCATCTTTCATCCTTTTGCAGCTCGTTTAAGGAGAACATTTACCACATTCTGGTTGGTCCATCTTTGATAGTTAAATCTCAACTTTTATGGTCCAATGTGGTCGAAGCTATTCTTTCTGTAATTTAGTTTTTTTTGGGAAGGAATCAGGGGATATTTCATGATGAACATCTCCCTTGGAAGGATTGTTGGCATTTTGCTTGTCTTAAAGCTTCATCTTGATGTTTTATATACAAGCATTTTGTAGATTTTTCTATTCAAGATCATTGTTTGAATTGAATGCATTTATTTTTCCTGCTTAATTTCCTTTCTATTGTCTCTTGTTTTGGTGGTTATGTTTTTGGTGTCGTTGAACATCAGTCTCTTTTCATTCTTTTTCAATGAAAAGTTATGTTGCCTCCCAGAAAAATAAAAAGGTTACGAAAAACGAAGCTCACAAAAGGAAGCCCCATTAAAGAAAAGGCCACCAGGTAGACAAAATAGTGTCTAAGACATAATTACCAAGATTTTTGAAATCGAAGTCCAAAAAGGAAACATAAAATCTAATGAGGGACCAAATCTCATTGAGATCCCTCTCCAAGCATGTAAATACTTTGTTATTCCGCTCGCCTCAAAGCCTCCACAAAATAGCACACACTACAAGCCATAAGAATTGGAAAAGGTGGATGGTGGAGGAAGTTCCCCATCATATCACTGGTTTTTCTATGCCAAGCTAGTGAAATGCCAGACATTTAGAAGAAAAGATTCCAAACAGATTCCAAACAGATCTATTCATTATTTCAATGAAGAGACTTGTTTCCTTTCAAAAAAAAAAAAAAAAAAAAAAATCCAAACAAATCTTGCACTCACATCTCCAAAGAATGTGATCCAAGTCTTCCATTGCCTTTTGATAAGGCAACAAAACGGGTCAACAAACGGAGACATCTTTCTCACAAGCCAATCCATAGTGTCAGTAGCCATGTAATATGTGTTAGGTATAGAACTTAACTTTCTTTGGAATCTTAATCCTCTAGAGAGTAGAAAAAACCAACTCACTAATTGGAGAAGGGTTCAACAAAACACAAAAAAAGGATTTACAGGAGAAACCGTCCGAAGGGTTGGGGCTCCACACATGAAAATCCCTTCTTCCGAAGTTTTAACACTTTACCAAGCAAGGCTAGAGATACGACATCTATCACTTCCCTATTGATTAAGAGAAATGGAACCCAGACAAAAAAGAAACCACTAACCAAGCTCCTTGACCAAATGGAGAAATTAGACACCACATGATTTTTAAAAGAAAAAGATGATAAAGGCACGTGAATGCAAAGTAAGAGGGGCTAGCTCCCACCCAATGATTTCCCAAAAGTATGTTTCCTTCTCCTCCCCCGTGACATAATGAACCAAGTGAGAGAAAGAAGGGAGCTCAAAGATATATCCTTCCATAAATTTCAATAAGTGATTTCAACTCCTACTCAACAGCCATTCAAAAGGATGAGGGTCGAACTTGCTTGCAATAATTCTATGTTACGAACCATCATGAGTTGGTCTAGTGATAAAAAAGGGGACATAGTCTCAATAAATGGCTAAGAGGTCATGGATTCAATCCATGATGACCACCTACCTAGGAATTAATATTCTACGAGTTTTCTTGACACCCAAATGTTGTAGAGTCAGGTGGATTGTCCCGTGAGATTAGTCGAGGTGCATGTAAGCTGGCCCGGACACTCACGGATATAAAAAGAATAAAAAATAAAATATTCTATGTTATGTTGGATTCATGGGAGAAACGACAACCATTTGGCTAACAAAGATCTATTAAGGTTCTTCAAATTCGACCTCTCAATGATCTCCCACCTAACCAGGTACTATCATCTTCCTTCATCCACCCTTTCTCAAAGGAAATGCTCATAAGCTTCTCAATATTCTTACTAACCACGCACAAAACTTTAAAAAGAGAGAGAATAGATATGGATACCACTCGAAACCAATCATATCATGGTTAGTTCACTAGCGGTTCTTCAAATTCCCAATTTCTAGCCCGAAGTAACTCGACCTCTCAATGATCTCCTACCTAACCAAGTACTGTCATTTTCCCTCATCCACTCTTTCTCAAAGGAAATGCTCATAAGCTTCTCAATATTCTTACAAACCTCACACGAAACTTTAAAAAGTGAGAAAGAATAGATAAGGATACCACTCGAAACCAATCATATCATGGTTAGTTCACTAGCTTACGAACTTACTTGAACATGATCTGTTCTATAGGTAGGTTGTACAACTGTGTCCTTGAGTTCTAAAGGTTAGTTCACTAGCTTTAGAGAAACAACTTTTCTTTCAAGATGCTAATATTTTCCTAATTTTGTCCACCATTGGGTTCCAAAAATAAATGGATTTGGGGTTACTTCCAAGAGGGAGGCCTAAGGTAAGAATAGGGCATGGATCCAACTTTCACAGTCCACCCCTTCTTCCCAACTCCTAAGCTTCTTGTCATCACAATTGAGCCCTATAATCGGACAAATTACTCTTGTTAATCCTAATCGAGCCAAATCTTCAAAGAATGCCAAGATATGTTTCAAGGTTAAGAACGAAGCCCATTCCCAGAAAACAAAAGGTAACGTTTCGTCGGCAAATTGAAGGTGAAAAAGAGCACATTCTTCTTACCAACATCAAAGGGCTCATTGATTTTTCCTTTAGCACTCCTAGAGACAAACTCTACTTAAAACATCCACAACGAGCAAGAAAAGAACGGGGATAAATGGTGTCCCTATTTAAGGTCTCTAGAGGCCAAAACTTTACCCTAGGGGCAAAGTAAAAGCTCCAATGGAGCAAGAGAACTTCGGCGAGATAGGAACTGAGGAAAAAAAAGGTACTTGATTTGATAATAAGAAAGGTGTGGTTTGCCTTGGGGTGGGTGCAGGCTCTCTCGGGTATAGGAGAGCAAAGCTCTGACTTTCCAAACAAAAAAAGAAAAAAAAAAAAAATGAAAAACGAAAAAAAAAAAGAAGAGGTTGTGGTAAAGAGGACTCTGGAGGAAGAGCATGAGATGGAGTGGGACTGACGAGGATAGAGTTCTAGCTCAAGTGCAGCTTGCTTATTGCTTATTGGGATGATGTCTCGAGCAAAATTACTCTGTCTGAGCCAAGTAGACTGGTTTGTTACGAGTTGTATGACTTATGATATGTCGGGGTGTCTTGAAGAAATGTCGCATGATTGGTGAAAACCAAATTCTGAATATCAAGACAATCCTTATTTGATTCGAAAGAGTTTGGTTTAACAGTGAAGAGTCATGGTCTAACATAACAAATACACGTACACCAACTTAACCAAAATAATATGCCCATTTCTATCGATTAAATTGTGATGTTTTCTACTTTTTAAACCCTCCATTAAGAGGGAAAAGTACAAAAACCTCCCAGAAAATTTTAGCTATTATTTTTTTAGTATTAACGAAAACTCTTAATTGTTCATTGGTGTAAAAATAATTTGGTGTAGAAAATTGTGTACACTATTTAATCAAAGAAGTTAACTAAAGCTTTTGTCCTGATGGGTCCAGCAAATGGAAAGAAGTACAATTTTCTAATGTCATATTGTGCAGATTCTTATGAGGAAAAATGGTATTATAGGGAGGCAGTTAGTTGCGAAAAAAAAAAAGAAAGAAAAGGCAACCTTACTTGAACAGGAACTGTTATGCAGGTTGAAAAACTATAATTATGTCCTTGAGGTGTAAAAATAGTTTTGAAGAAGAAAAAAACTAGTGATATGAAACTATACTATGGCTATCTTACTCGATCCATAATTCTCCAAATTCTCCAAACTTTGGAAAAAAAGGATTGCCAAACTTTTAATTCCTCACCCCACCTACCAAATGAAAGGAGAGATAAGGAGACAATCGTCTTTTTACTTCTTGAGAACTTGAGGTATATTATATTTGTTCTATCATGGAAAAGGTATTTCTTTCTATTTACTACTATGTTTTTGCAGCGAGAGGAGCAGGGAAATGAGAAGGATGGCGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGCAAAGGACGTGGTCGATCACAGTACCACCACAATCACAATAATAATAACCATAACCATGGGAACCACGTGGGAACTCCACCTTCGAGTAGTTCTACCACCATCGAGCAGGCAGGTGCAGTGAAGCAGCAGCCTCCGGGGCCACGAATGCCAGATGGGACAAGAGGCTTTGCGATGGGGCGGGGGAAGCCGGTGACTGTGAATATGGCGTGAAAACGAAAGTTACTTGAAGGGAATGGAAAATACATGGAGAGGATACTCGTGTGTACGTCTGTATGAGTAGAAGAAAGAGAGTGGTGCGGGTGGAAGCTGTCTAATTAATAGGGCAAAAAGCAAAGGCAAAGCAAAACAATGGTGTGTTGATAGCAGGGTTTTTAGTAGGGCTATCAAAAACCATTGTAATTACAAATGAATGGGTGCTTTGGTTCAACAAGAGTTTTAGTTTTTAATGTATTTGGG

mRNA sequence

ATGACATCAAAATCTGCTCCAGCTCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATATCTCTGAACAACCGCGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTCGATGTTCATCCACATGAACAACGAGAGGAGCAGGGAAATGAGAAGGATGGCGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGCAAAGGACGTGGTCGATCACAGTACCACCACAATCACAATAATAATAACCATAACCATGGGAACCACGTGGGAACTCCACCTTCGAGTAGTTCTACCACCATCGAGCAGGCAGGTGCAGTGAAGCAGCAGCCTCCGGGGCCACGAATGCCAGATGGGACAAGAGGCTTTGCGATGGGGCGGGGGAAGCCGGTGACTGTGAATATGGCGTGAAAACGAAAGTTACTTGAAGGGAATGGAAAATACATGGAGAGGATACTCGTGTGTACGTCTGTATGAGTAGAAGAAAGAGAGTGGTGCGGGTGGAAGCTGTCTAATTAATAGGGCAAAAAGCAAAGGCAAAGCAAAACAATGGTGTGTTGATAGCAGGGTTTTTAGTAGGGCTATCAAAAACCATTGTAATTACAAATGAATGGGTGCTTTGGTTCAACAAGAGTTTTAGTTTTTAATGTATTTGGG

Coding sequence (CDS)

ATGACATCAAAATCTGCTCCAGCTCGTGGGAAGAAGGGACATAATGGGGAGATGAACTGCAAAGATGATGATATCTCTGAACAACCGCGTATTGAGAAGCATGTAGACGATCTTTCTGATCAAGTCGATGTTCATCCACATGAACAACGAGAGGAGCAGGGAAATGAGAAGGATGGCGGTGGGCAGAGAAGAGTCCGAAATAGGGTACGTGGCAAAGGACGTGGTCGATCACAGTACCACCACAATCACAATAATAATAACCATAACCATGGGAACCACGTGGGAACTCCACCTTCGAGTAGTTCTACCACCATCGAGCAGGCAGGTGCAGTGAAGCAGCAGCCTCCGGGGCCACGAATGCCAGATGGGACAAGAGGCTTTGCGATGGGGCGGGGGAAGCCGGTGACTGTGAATATGGCGTGA

Protein sequence

MTSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGGQRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMPDGTRGFAMGRGKPVTVNMA
Homology
[Close]
BLAST of Lsi03G008890 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 84/156 (53.85%), Postives = 98/156 (62.82%), Query Frame = 0 

Query: 4   KSAPARGKKGHNGEMNCKDDD--ISEQPRIEKHVDDLSDQVDVHPHEQ--REEQGNEKDG 63
           K    RG+KGH+ ++  ++DD   SEQ  IEK  DD S + D H  EQ   E+QGNEK  
Sbjct: 388 KQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEK-A 447

Query: 64  GGQRRVRNRVRGKGRGRSQYHHNHN-NNNHNH---------GNH-------VGTPPSSS- 123
            GQR+ RNR RGKGRGR Q H N N NNNH+H         GNH       VGT PS++ 
Sbjct: 448 AGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNP 507

Query: 124 STTIEQAGAVKQQPPGPRMPDGTRGFAMGRGKPVTV 138
              +EQ G  KQQPPGPRMPDGTRGF+MGRGKPV V
Sbjct: 508 MNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPVMV 542

[Close]
BLAST of Lsi03G008890 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.1e-05
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 56  EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQ 115
           + DGG  ++ +N  +G+  G+GR Q H   N   H      GT  SSS         V +
Sbjct: 336 DDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGH------GTASSSSHPNYHPV-EVSK 395

Query: 116 QPPGPRMPDGTRGFAMGRGKPV 136
           +PPGPRMPDGTRGF MGRGK +
Sbjct: 396 RPPGPRMPDGTRGFTMGRGKAI 410

[Close]
BLAST of Lsi03G008890 vs. ExPASy TrEMBL
Match: A0A6J1EJ80 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.8e-62
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKSAP RGKKGHNGEMNCKDDD SEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGG
Sbjct: 378 TSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGG 437

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPPSSSS++IEQAG VKQQPPGPRMP
Sbjct: 438 QRRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMP 497

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGF+MGRGKPV+VNMA
Sbjct: 498 DGTRGFSMGRGKPVSVNMA 513

[Close]
BLAST of Lsi03G008890 vs. ExPASy TrEMBL
Match: A0A6J1I059 (la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKS P RGKKGHNGEMNCKDDD SEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGG
Sbjct: 378 TSKSTPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGG 437

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPPSSSS++IEQAG VKQQPPGPRMP
Sbjct: 438 QRRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMP 497

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGF+MGRGKPV+VNMA
Sbjct: 498 DGTRGFSMGRGKPVSVNMA 513

[Close]
BLAST of Lsi03G008890 vs. ExPASy TrEMBL
Match: A0A1S3BGA3 (la-related protein 6B isoform X4 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.8e-59
Identity = 125/138 (90.58%), Postives = 127/138 (92.03%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           +SKSAP RGKKGHNGEMN KD D SEQP IEKHVDDLSDQVDVHP EQREE GNEKDGGG
Sbjct: 169 SSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQREEHGNEKDGGG 228

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNH NN HNHGNHVGTPP SSSTTIEQAG +KQQPPGPRMP
Sbjct: 229 QRRVRNRVRGKGRGRSQYHHNH-NNIHNHGNHVGTPPPSSSTTIEQAGTMKQQPPGPRMP 288

Query: 122 DGTRGFAMGRGKPVTVNM 140
           DGTRGFAMGRGKPVTVNM
Sbjct: 289 DGTRGFAMGRGKPVTVNM 305

[Close]
BLAST of Lsi03G008890 vs. ExPASy TrEMBL
Match: A0A1S3BGU3 (la-related protein 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.8e-59
Identity = 125/138 (90.58%), Postives = 127/138 (92.03%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           +SKSAP RGKKGHNGEMN KD D SEQP IEKHVDDLSDQVDVHP EQREE GNEKDGGG
Sbjct: 355 SSKSAPVRGKKGHNGEMNYKDVDASEQPAIEKHVDDLSDQVDVHPPEQREEHGNEKDGGG 414

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNH NN HNHGNHVGTPP SSSTTIEQAG +KQQPPGPRMP
Sbjct: 415 QRRVRNRVRGKGRGRSQYHHNH-NNIHNHGNHVGTPPPSSSTTIEQAGTMKQQPPGPRMP 474

Query: 122 DGTRGFAMGRGKPVTVNM 140
           DGTRGFAMGRGKPVTVNM
Sbjct: 475 DGTRGFAMGRGKPVTVNM 491

[Close]
BLAST of Lsi03G008890 vs. ExPASy TrEMBL
Match: A0A6J1GLH8 (la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 118/142 (83.10%), Postives = 128/142 (90.14%), Query Frame = 0 

Query: 3   SKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGGQ 62
           SKSA +RGKKGH+GEMNCKDD+ SEQPRIEKHVDDLSDQVD+H HEQREEQGNEKDGGGQ
Sbjct: 366 SKSALSRGKKGHSGEMNCKDDETSEQPRIEKHVDDLSDQVDIHLHEQREEQGNEKDGGGQ 425

Query: 63  RRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPP-SSSSTTIEQAGAVK----QQPPG 122
           RRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPP SSS+TT+E AG +K    QQPPG
Sbjct: 426 RRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPLSSSTTTMELAGTMKQQQQQQPPG 485

Query: 123 PRMPDGTRGFAMGRGKPVTVNM 140
           PRMPDGTRGFAMGRGK V+V++
Sbjct: 486 PRMPDGTRGFAMGRGKAVSVSV 504

[Close]
BLAST of Lsi03G008890 vs. NCBI nr
Match: XP_038888029.1 (la-related protein 6B [Benincasa hispida])

HSP 1 Score: 261.9 bits (668), Expect = 3.1e-66
Identity = 135/139 (97.12%), Postives = 136/139 (97.84%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKSAPARGKKGHNGEMNCKDDDISEQP IEKHVDDLSDQVDVHPHEQREEQGNEKDGGG
Sbjct: 359 TSKSAPARGKKGHNGEMNCKDDDISEQPHIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 418

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNH NNNHNHGNHVGTPPSSSSTTIEQAG +KQQPPGPRMP
Sbjct: 419 QRRVRNRVRGKGRGRSQYHHNH-NNNHNHGNHVGTPPSSSSTTIEQAGTMKQQPPGPRMP 478

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGFAMGRGKPVTVNMA
Sbjct: 479 DGTRGFAMGRGKPVTVNMA 496

[Close]
BLAST of Lsi03G008890 vs. NCBI nr
Match: XP_022928061.1 (la-related protein 6B-like [Cucurbita moschata])

HSP 1 Score: 247.3 bits (630), Expect = 7.9e-62
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKSAP RGKKGHNGEMNCKDDD SEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGG
Sbjct: 378 TSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGG 437

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPPSSSS++IEQAG VKQQPPGPRMP
Sbjct: 438 QRRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMP 497

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGF+MGRGKPV+VNMA
Sbjct: 498 DGTRGFSMGRGKPVSVNMA 513

[Close]
BLAST of Lsi03G008890 vs. NCBI nr
Match: XP_023530713.1 (la-related protein 6B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 7.9e-62
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKSAP RGKKGHNGEMNCKDDD SEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGG
Sbjct: 382 TSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGG 441

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPPSSSS++IEQAG VKQQPPGPRMP
Sbjct: 442 QRRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMP 501

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGF+MGRGKPV+VNMA
Sbjct: 502 DGTRGFSMGRGKPVSVNMA 517

[Close]
BLAST of Lsi03G008890 vs. NCBI nr
Match: KAG6588510.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 247.3 bits (630), Expect = 7.9e-62
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKSAP RGKKGHNGEMNCKDDD SEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGG
Sbjct: 384 TSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGG 443

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPPSSSS++IEQAG VKQQPPGPRMP
Sbjct: 444 QRRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMP 503

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGF+MGRGKPV+VNMA
Sbjct: 504 DGTRGFSMGRGKPVSVNMA 519

[Close]
BLAST of Lsi03G008890 vs. NCBI nr
Match: KAG7022340.1 (La-related protein 6B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.3 bits (630), Expect = 7.9e-62
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 2   TSKSAPARGKKGHNGEMNCKDDDISEQPRIEKHVDDLSDQVDVHPHEQREEQGNEKDGGG 61
           TSKSAP RGKKGHNGEMNCKDDD SEQP IEKHVDDLSDQ DVHPHEQREEQGNEKDGGG
Sbjct: 300 TSKSAPPRGKKGHNGEMNCKDDDTSEQPHIEKHVDDLSDQADVHPHEQREEQGNEKDGGG 359

Query: 62  QRRVRNRVRGKGRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQQPPGPRMP 121
           QRRVRNRVRGKGRGRSQYHHNHNN   NHGNHVGTPPSSSS++IEQAG VKQQPPGPRMP
Sbjct: 360 QRRVRNRVRGKGRGRSQYHHNHNN---NHGNHVGTPPSSSSSSIEQAGTVKQQPPGPRMP 419

Query: 122 DGTRGFAMGRGKPVTVNMA 141
           DGTRGF+MGRGKPV+VNMA
Sbjct: 420 DGTRGFSMGRGKPVSVNMA 435

[Close]
BLAST of Lsi03G008890 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26
Identity = 84/156 (53.85%), Postives = 98/156 (62.82%), Query Frame = 0 

Query: 4   KSAPARGKKGHNGEMNCKDDD--ISEQPRIEKHVDDLSDQVDVHPHEQ--REEQGNEKDG 63
           K    RG+KGH+ ++  ++DD   SEQ  IEK  DD S + D H  EQ   E+QGNEK  
Sbjct: 388 KQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEK-A 447

Query: 64  GGQRRVRNRVRGKGRGRSQYHHNHN-NNNHNH---------GNH-------VGTPPSSS- 123
            GQR+ RNR RGKGRGR Q H N N NNNH+H         GNH       VGT PS++ 
Sbjct: 448 AGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNP 507

Query: 124 STTIEQAGAVKQQPPGPRMPDGTRGFAMGRGKPVTV 138
              +EQ G  KQQPPGPRMPDGTRGF+MGRGKPV V
Sbjct: 508 MNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPVMV 542

[Close]
BLAST of Lsi03G008890 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-26
Identity = 84/156 (53.85%), Postives = 98/156 (62.82%), Query Frame = 0 

Query: 4   KSAPARGKKGHNGEMNCKDDD--ISEQPRIEKHVDDLSDQVDVHPHEQ--REEQGNEKDG 63
           K    RG+KGH+ ++  ++DD   SEQ  IEK  DD S + D H  EQ   E+QGNEK  
Sbjct: 372 KQGQGRGRKGHDADVEHEEDDATTSEQQPIEKQSDDCSGEWDTHMQEQPIGEDQGNEK-A 431

Query: 64  GGQRRVRNRVRGKGRGRSQYHHNHN-NNNHNH---------GNH-------VGTPPSSS- 123
            GQR+ RNR RGKGRGR Q H N N NNNH+H         GNH       VGT PS++ 
Sbjct: 432 AGQRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNP 491

Query: 124 STTIEQAGAVKQQPPGPRMPDGTRGFAMGRGKPVTV 138
              +EQ G  KQQPPGPRMPDGTRGF+MGRGKPV V
Sbjct: 492 MNNMEQPGMGKQQPPGPRMPDGTRGFSMGRGKPVMV 526

[Close]
BLAST of Lsi03G008890 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-06
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 56  EKDGGGQRRVRNRVRGK--GRGRSQYHHNHNNNNHNHGNHVGTPPSSSSTTIEQAGAVKQ 115
           + DGG  ++ +N  +G+  G+GR Q H   N   H      GT  SSS         V +
Sbjct: 336 DDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGH------GTASSSSHPNYHPV-EVSK 395

Query: 116 QPPGPRMPDGTRGFAMGRGKPV 136
           +PPGPRMPDGTRGF MGRGK +
Sbjct: 396 RPPGPRMPDGTRGFTMGRGKAI 410

The following BLAST results are available for this feature:
BLAST of Lsi03G008890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O805672.1e-2553.85La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2[more]
Q94A384.1e-0543.90La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1[more]
BLAST of Lsi03G008890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EJ803.8e-6291.37la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111434957 PE=4 SV... [more]
A0A6J1I0591.1e-6190.65la-related protein 6B-like OS=Cucurbita maxima OX=3661 GN=LOC111468508 PE=4 SV=1[more]
A0A1S3BGA38.8e-5990.58la-related protein 6B isoform X4 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV... [more]
A0A1S3BGU38.8e-5990.58la-related protein 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489697 PE=4 SV... [more]
A0A6J1GLH84.2e-5383.10la-related protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111455073 PE=4 SV... [more]
BLAST of Lsi03G008890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888029.13.1e-6697.12la-related protein 6B [Benincasa hispida][more]
XP_022928061.17.9e-6291.37la-related protein 6B-like [Cucurbita moschata][more]
XP_023530713.17.9e-6291.37la-related protein 6B-like [Cucurbita pepo subsp. pepo][more]
KAG6588510.17.9e-6291.37La-related protein 6B, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7022340.17.9e-6291.37La-related protein 6B, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lsi03G008890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43970.11.5e-2653.85RNA-binding protein [more]
AT2G43970.21.5e-2653.85RNA-binding protein [more]
AT5G46250.12.9e-0643.90RNA-binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..140
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 15..136
NoneNo IPR availablePANTHERPTHR22792:SF62LA-RELATED PROTEIN 6Ccoord: 15..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008890.1Lsi03G008890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0005634 nucleus
cellular_component GO:0005844 polysome
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003729 mRNA binding