Lsi03G008820 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G008820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pectin lyase-like superfamily protein
Location	chr03: 15437714 .. 15440915 (+)
RNA-Seq Expression	Lsi03G008820
Synteny	Lsi03G008820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCAAAGACGCTAGATTTTTCCCTACACAAAATGGCCAAGTTTTCCTCTTTCTTGATCCATTTCTCTCTGTTTATAATCAGTCTCTTCTTCCAAGCATCAAATGCTGGTAATTATAATGTGATAAGTTTTGGTGCAAAGAGTGATGGAAGAACAGAATCAACTGTTTCTTTTCTCAAGGCTTGGGCTTCAGCTTGTAATTCAGCTACAGCTTCTACAATTTATGTTCCTAAAGGAAAGTTCTTAATTAAAGGCGTTGTTTTCAAAGGCCCTTGTAACAACCAAATAACATTTCGAATTGATGGGACGATTGTTGCACCCTCAGATTATCGTACACTTGGAAACTCCAATTCTTGGATCTTGTTCTCTAAAGTTAACAAAGTTTCTGTCATCGGTGGAATCCTTGATGCCAAAGGTGCTAGTTATTGGGCTTGTAAGACATCTGGAAAGAATTGCCCTGTCGGAGCTCCGGTATGTGTTCTACTATCATTGAAATTCAAGGATTGTTTCTTCAAATTAAAAATAATTAAATTTTTATAACTCATTATTCTTACAATTTGTTGTAATTTTAAAAAGAAAAATACTCAGTTGATCTTGAGCTGAACCATTCTTTGTGCAGCCCACACAAGTATCCAATCGTAGGATTTCACGTGGTGAACTTTTTTTTTTTTTTTTAAGAAAAAAAGCAACATTTTATATATATAAGGAAGGAGATGCATATAAGATGGTTGCACTCAAATATTACTCTTTTAAAGAATGAGTACAAATAATCTTCTATAGCGGTGTGTTTTTATACGGTTTCTTTTCATTTTTCTACTTAAATTATCAGTCAAACTATGGTTTTTAAAAACAAAGTTAGATTTTAAATCAAAGAATAGTTTTGTAAATATAACCTTTTTGGGGTAAATATTTTCTTGAATTGGATTCAATGTGTATAAGATGTTTGAGTGGATGGGTTAAGATAAATTTGATTTTTGTTATCAATACTTTTATTTTCGGTTTGGATTTTGCAAAAGTAAAAGTTATATAGAGATCGAAAAAATATCTCTTTGGTCCCTAGATTTTAAGTTTAGTTTTTTATTTTTAGTTCTAGTCATTGGTTCGAATATAGTCCCTATGTTTCAAAATCTTATAATTTTACACTCAAGATTTGAGTTTTGTTCCAATTTGGTTTTTAAGTTTTAAGATTTATATTTTTAACTTCGACTTTTCACTAAATACTCACTTTCATCTTTAGTGGTAATGTCTATTAGTTAACTTAAATGAATTATACTTCATTAATCAGAATTTAAAGATTAAAAGTATAATATTTTGAAACTTAAGGACCAAATAGAAATTAGACTTAAAATTTATGACAAAAAAATATTTTAACCTTATATTAAAAGTTTAGGTGGTGTATTAAAGTGTGATATGTATAATGCAGTCAATGACATTCAATTGGGCAAACAACATTGTAATAAGTGGATTAACATCGATCAATAGCCGACAAACTCACCTTGTAATCAATGGTTGCAAGAAGGTTGTTGTTCAAAATGTGAAGGCAATAGCTCCCGACCAAAGCCCCAATACTGATGGAATTCATGTTCAAACATCTACTGATGTTACAATTACTGGGTGCACACTACAAACTGGAGATGATTGTGTTTCAATTGGTCCAGGAACTTATAATTTATTCATGACGAATCTCAAATGTGGACCTGGCCATGGTGTGAGGTAAAATCAACTTTACTCAATTATTAGGACAAGTCTTTGAATAATTAAGGTTGCTACAATAAGAAGATTCAAAATATTATTCGCCCCTTAATAACCTTTTAAATATATATTATTTGAAATACGTATTATAATTTCTCTCTCCTACATTTAATAATGTAAAATTTTTACAACATCATACAAGATTTTTGTTTGTTTGTTTTTTTCTTTTTTGTCCTTTATATTGATTTCGATGTCCTAAAATTAGTGTTTAAAATTTATGTTATTTTAAATATAAAAGATGATTAAGGTCCTATTTGGTAATTATTTGTGCCTTAACCATTTGAATTTTAGTTTTTGGTTTTGTAAAATTAAGCATATTTTCTTTTAATTTTTTACAATGGTTTGCATTTTTTTAGGCTGATGTGATAAACATTTGAGCTCCATTTGGTAACTTTTTAGATTTTGGTTTTTGAAAACTAAGCCTATTTCTTGTTAATTTCTTACAATGATATGCATCTTTCTTAAGTACAATAGTTGAATTCTTAGCCAAATTCTAAAAACAAAAACAAGTTTTTTAGGTTAATTTTTGAAAAAAATGATAAAAAGTATCTAGAGAAATCTAGAGAAAAGAAGAGTGTTTTTATACTTAATTTTCAAATAAAAAACCAAAAACCAAAGTAATGCCAAACGAGACTTTGATTTTTTTTTATTTTTGATTCTTGAAAATTAAGTCAATAAACACCACTTTCATAATCTATTGATTTTTATGTGTTTTATTGTTTACCTTTTAGGAGTAATTCAAAATCAAATCTAAATTTTGAAAACTTATTAAAGAATAGTAATTTTTGTTTTTAGAAATTGGCTAAGAAATCAATTAGTTTCCTAAAAAATACACAAAAATCAAAATAGGCACAATTTTTCAAAAACCAAAAACATAATAGTTACCGGCGTAAATGAAAGAGTAATATTGTTCAAGTTTTAGCAACTAAATTATATGAATAAATTATTTCAATCTCACCATTGGAAGCTGATGATTTAAAATTGGAACACACAGCATTGGAAGCTTGGGGAAGGAGTTAAATGAAGATGGAGTACAAAACATAACCTTAAAGAACGCAATATTTACAGGATCAGACAATGGCATAAGGATAAAAACATGGGCAAGACCAAGCAAAGGCTTCGTTAGAAACATTCTATTTGACAACATTATTATGAACAACGTCCAAAATCCAATTGTAATTGATCAAAATTATTGCCCTGATAACAAAGGTTGTCCCCGACAAAATTCAGGCATACAAATCAGCAAAGTCACATATAGAAATATTAGAGGAACATCAGCAACCCCAGAAGCTGTCAATTTTGATTGTAGCATTACAAATCCATGCAGAGACATAAAATTACAAGACATAAAGCTTCTTTATAAGAACAAAGCTGCCACGTCATCATGCAAAAATGTTCGTGGATCTAGTACTGGAATATTGATGCCTCGAATAAGCTGCTTGTAGCAAAG

mRNA sequence

CTTTCAAAGACGCTAGATTTTTCCCTACACAAAATGGCCAAGTTTTCCTCTTTCTTGATCCATTTCTCTCTGTTTATAATCAGTCTCTTCTTCCAAGCATCAAATGCTGGTAATTATAATGTGATAAGTTTTGGTGCAAAGAGTGATGGAAGAACAGAATCAACTGTTTCTTTTCTCAAGGCTTGGGCTTCAGCTTGTAATTCAGCTACAGCTTCTACAATTTATGTTCCTAAAGGAAAGTTCTTAATTAAAGGCGTTGTTTTCAAAGGCCCTTGTAACAACCAAATAACATTTCGAATTGATGGGACGATTGTTGCACCCTCAGATTATCGTACACTTGGAAACTCCAATTCTTGGATCTTGTTCTCTAAAGTTAACAAAGTTTCTGTCATCGGTGGAATCCTTGATGCCAAAGGTGCTAGTTATTGGGCTTGTAAGACATCTGGAAAGAATTGCCCTGTCGGAGCTCCGTCAATGACATTCAATTGGGCAAACAACATTGTAATAAGTGGATTAACATCGATCAATAGCCGACAAACTCACCTTGTAATCAATGGTTGCAAGAAGGTTGTTGTTCAAAATGTGAAGGCAATAGCTCCCGACCAAAGCCCCAATACTGATGGAATTCATGTTCAAACATCTACTGATGTTACAATTACTGGGTGCACACTACAAACTGGAGATGATTGTGTTTCAATTGGTCCAGGAACTTATAATTTATTCATGACGAATCTCAAATGTGGACCTGGCCATGGTGTGAGCATTGGAAGCTTGGGGAAGGAGTTAAATGAAGATGGAGTACAAAACATAACCTTAAAGAACGCAATATTTACAGGATCAGACAATGGCATAAGGATAAAAACATGGGCAAGACCAAGCAAAGGCTTCGTTAGAAACATTCTATTTGACAACATTATTATGAACAACGTCCAAAATCCAATTGTAATTGATCAAAATTATTGCCCTGATAACAAAGGTTGTCCCCGACAAAATTCAGGCATACAAATCAGCAAAGTCACATATAGAAATATTAGAGGAACATCAGCAACCCCAGAAGCTGTCAATTTTGATTGTAGCATTACAAATCCATGCAGAGACATAAAATTACAAGACATAAAGCTTCTTTATAAGAACAAAGCTGCCACGTCATCATGCAAAAATGTTCGTGGATCTAGTACTGGAATATTGATGCCTCGAATAAGCTGCTTGTAGCAAAG

Coding sequence (CDS)

ATGGCCAAGTTTTCCTCTTTCTTGATCCATTTCTCTCTGTTTATAATCAGTCTCTTCTTCCAAGCATCAAATGCTGGTAATTATAATGTGATAAGTTTTGGTGCAAAGAGTGATGGAAGAACAGAATCAACTGTTTCTTTTCTCAAGGCTTGGGCTTCAGCTTGTAATTCAGCTACAGCTTCTACAATTTATGTTCCTAAAGGAAAGTTCTTAATTAAAGGCGTTGTTTTCAAAGGCCCTTGTAACAACCAAATAACATTTCGAATTGATGGGACGATTGTTGCACCCTCAGATTATCGTACACTTGGAAACTCCAATTCTTGGATCTTGTTCTCTAAAGTTAACAAAGTTTCTGTCATCGGTGGAATCCTTGATGCCAAAGGTGCTAGTTATTGGGCTTGTAAGACATCTGGAAAGAATTGCCCTGTCGGAGCTCCGTCAATGACATTCAATTGGGCAAACAACATTGTAATAAGTGGATTAACATCGATCAATAGCCGACAAACTCACCTTGTAATCAATGGTTGCAAGAAGGTTGTTGTTCAAAATGTGAAGGCAATAGCTCCCGACCAAAGCCCCAATACTGATGGAATTCATGTTCAAACATCTACTGATGTTACAATTACTGGGTGCACACTACAAACTGGAGATGATTGTGTTTCAATTGGTCCAGGAACTTATAATTTATTCATGACGAATCTCAAATGTGGACCTGGCCATGGTGTGAGCATTGGAAGCTTGGGGAAGGAGTTAAATGAAGATGGAGTACAAAACATAACCTTAAAGAACGCAATATTTACAGGATCAGACAATGGCATAAGGATAAAAACATGGGCAAGACCAAGCAAAGGCTTCGTTAGAAACATTCTATTTGACAACATTATTATGAACAACGTCCAAAATCCAATTGTAATTGATCAAAATTATTGCCCTGATAACAAAGGTTGTCCCCGACAAAATTCAGGCATACAAATCAGCAAAGTCACATATAGAAATATTAGAGGAACATCAGCAACCCCAGAAGCTGTCAATTTTGATTGTAGCATTACAAATCCATGCAGAGACATAAAATTACAAGACATAAAGCTTCTTTATAAGAACAAAGCTGCCACGTCATCATGCAAAAATGTTCGTGGATCTAGTACTGGAATATTGATGCCTCGAATAAGCTGCTTGTAG

Protein sequence

MAKFSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKAATSSCKNVRGSSTGILMPRISCL

Homology

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BLAST of Lsi03G008820 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 1.6e-126
Identity = 225/389 (57.84%), Postives = 282/389 (72.49%), Query Frame = 0


Query: 12  SLFIISLFF------QASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYV 71
           SLF +SL F        ++   YNV S GAK+DG+T+ST +FL AWA AC S     IYV
Sbjct: 6   SLFSLSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYV 65

Query: 72  PKGKFLIKGVVFKGPC-NNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGIL 131
           P G F ++ VVF GPC NN ITFRI GT+VAPSDYR +GN+ +WI F  VN V++ GGIL
Sbjct: 66  PAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGIL 125

Query: 132 DAKGASYWACKT-SGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQN 191
           D +G + WACK   G++CP GA ++ F+ +NNIV+SGL S+NS+  H+VIN  + V +Q 
Sbjct: 126 DGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQG 185

Query: 192 VKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVS 251
           V+      SPNTDGIHVQ S+ VTI    + TGDDCVSIGPGT NL++  + CGPGHG+S
Sbjct: 186 VRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGIS 245

Query: 252 IGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPI 311
           IGSLGKE  E GVQN+T+K   F+G+ NG+RIK+W RPS GF RNILF +  M NV+NPI
Sbjct: 246 IGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPI 305

Query: 312 VIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKL 371
           VIDQ+YCPDNKGCP Q SG+QIS VTY +I GTSAT  AV FDCS  +PCR+IKL+D+KL
Sbjct: 306 VIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKL 365

Query: 372 LYKNKAATSSCKNVRGSSTGILMPRISCL 393
            YKN+AA SSC +  G++ G++ P  SCL
Sbjct: 366 TYKNQAAESSCSHADGTTEGVVQP-TSCL 393

[Close]

BLAST of Lsi03G008820 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.0e-101
Identity = 192/395 (48.61%), Postives = 259/395 (65.57%), Query Frame = 0


Query: 5   SSFLIHFSLFIISLFFQASNA----GNYNVISFGAKSDGRTESTVSFLKAWASACNSATA 64
           S  ++  +L I+     +S A       NV+S+GAK DG  +ST +FL AW  AC SA  
Sbjct: 6   SCLILPLALIILDFTLISSLAHPIPSTLNVLSYGAKPDGSKDSTKAFLAAWDVACASANP 65

Query: 65  STIYVPKGKFLIKGVVFKG-PCNN-QITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVS 124
           +TI VPKG+FL+  +VF G  C    I+ RI G+IVAP D+R + +S  WI F  V  VS
Sbjct: 66  TTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVS 125

Query: 125 VIGGILDAKGASYWACKTS-GKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCK 184
           + GGILDA+G S W CK + G NCP GA S+ F+ +NNI ISGLTSINS++ H+VI+   
Sbjct: 126 IYGGILDAQGTSLWKCKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSN 185

Query: 185 KVVVQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCG 244
            V +  VK  A + SPNTDGIHV++S  V IT   + TGDDC+SIGPG+ N+F+  ++CG
Sbjct: 186 NVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCG 245

Query: 245 PGHGVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMN 304
           PGHG+SIGSLG+   E GV N+T+ N  F G++NG+RIKTW + S  F RNI+F +I M 
Sbjct: 246 PGHGISIGSLGRAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMK 305

Query: 305 NVQNPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIK 364
            V+NPI+IDQ+YC  +K CP+Q SG+++S V Y +I GTS T  AV  DCS   PC  I 
Sbjct: 306 MVKNPIIIDQHYCL-HKPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIV 365

Query: 365 LQDIKLLYKNKAATSSCKNVRGSSTGILMPRISCL 393
           + D+ L+  ++ A +SC N  GS+  + +P   CL
Sbjct: 366 MDDVNLVSVHRPAQASCDNANGSANDV-VPFTPCL 398

[Close]

BLAST of Lsi03G008820 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 8.4e-80
Identity = 158/387 (40.83%), Postives = 238/387 (61.50%), Query Frame = 0


Query: 12  SLFIISLFFQASN---AGNYNVIS-FGAKSDGRTESTVSFLKAWASACNSATASTIYVPK 71
           S+F++ L F +++   +  ++V++ FGAK+DG+T+ +  FL AW  AC S T ST+ +PK
Sbjct: 10  SMFVLLLLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPK 69

Query: 72  GKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI-GGILDA 131
           G +L+  V  +GPC   I   + GTI AP+D     + N W+ F  V    +  GGI D 
Sbjct: 70  GTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPN-WVRFYSVENFKMFGGGIFDG 129

Query: 132 KGASYWACKTS-----GKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVV 191
           +G+  +   T          PV   ++ F++  N +I  +TS +S+  H+ +  CK + +
Sbjct: 130 QGSIAYEKNTCENREFRSKLPV---NIRFDFLTNALIQDITSKDSKLFHINVFACKNITL 189

Query: 192 QNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHG 251
           + +K  APD+SPNTDGIH+  S  V I    ++TGDDC+SIG GT N+ +  + CGPGHG
Sbjct: 190 ERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHG 249

Query: 252 VSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQN 311
           +SIGSLGK  NE+ V+ I + N   T + NG RIKTW     G V  I F++I MNNV +
Sbjct: 250 ISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSS 309

Query: 312 PIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDI 371
           PI+IDQ YCP NK    + S +++S ++++NIRGTSA PEA+ F CS ++PC++++L DI
Sbjct: 310 PILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADI 369

Query: 372 KLLYKN-KAATSSCKNVRGSSTGILMP 388
            + +   + ATS C NV+  ++G L P
Sbjct: 370 DIKHNGAEPATSQCLNVKPITSGKLNP 392

[Close]

BLAST of Lsi03G008820 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.9e-79
Identity = 158/387 (40.83%), Postives = 233/387 (60.21%), Query Frame = 0


Query: 12  SLFIISLFFQASNAGNYN----VISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPK 71
           S+F++ L F +++    +    V  FGAK+DG+T+ +  FL AW  AC S T ST+ +PK
Sbjct: 10  SMFVLLLLFISASKVQPDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPK 69

Query: 72  GKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI-GGILDA 131
           G +L+  V  +GPC   I   + GTI AP+D     + N W+ F  V    +  GGI D 
Sbjct: 70  GTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPN-WVRFYSVENFKMFGGGIFDG 129

Query: 132 KGASYWACKTS-----GKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVV 191
           +G+  +   T          PV   ++ F++  N +I  +TS +S+  H+ +  CK + +
Sbjct: 130 QGSIAYEKNTCENREFRSKLPV---NIRFDFVTNALIQDITSKDSKLFHINVFACKNITL 189

Query: 192 QNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHG 251
           + +K  APD+SPNTDGIH+  S  V I    ++TGDDC+SIG GT N+ +  + CGPGHG
Sbjct: 190 ERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHG 249

Query: 252 VSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQN 311
           +SIGSLGK  NE+ V+ I + N   T + NG RIKTW     G V  I F++I MNNV +
Sbjct: 250 ISIGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSS 309

Query: 312 PIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDI 371
           PI+IDQ YCP NK    + S +++S ++++NIRGTSA PEA+ F CS ++PC++++L DI
Sbjct: 310 PILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADI 369

Query: 372 KLLYKN-KAATSSCKNVRGSSTGILMP 388
            + +   + ATS C NV+  + G L P
Sbjct: 370 DIQHNGAEPATSQCLNVKPITIGKLNP 392

[Close]

BLAST of Lsi03G008820 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.3e-77
Identity = 151/375 (40.27%), Postives = 227/375 (60.53%), Query Frame = 0


Query: 23  SNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFLIKGVVFKGPC- 82
           S+   +NV  +GAK  G     V  +KAW +AC S   ST+ +PKG + +  V  +GPC 
Sbjct: 5   SSGSVFNVNDYGAKGAGDISQAV--MKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCK 64

Query: 83  NNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIG-GILDAKGASYWACKTSGK- 142
            ++I F+IDG + AP+D      S+ W+ F +++ ++V G G LD +G + WA     K 
Sbjct: 65  GSKIGFQIDGVVKAPADPSKF-KSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKN 124

Query: 143 -NCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQSPNTDGI 202
            NC   A ++ F++  + ++  +TS+NS+  H+ +  C+ +  Q+V   AP  S NTDGI
Sbjct: 125 PNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGI 184

Query: 203 HVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKELNEDGVQN 262
           HV  S  VTIT   + TGDDC+SIGPG+ N+ +T + CGPGHG+SIGSLG+  NE  V+ 
Sbjct: 185 HVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRG 244

Query: 263 ITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCPDNKGCPR 322
           IT+K   F+G+ NG+R+KTW     G   ++ F ++ MNNVQNP+++DQ YCP  +   +
Sbjct: 245 ITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQ 304

Query: 323 QNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKA--ATSSCKN 382
             S I++S + + NIRGTS    AV   CS   PC ++K+ +I L Y+     ATS+C N
Sbjct: 305 APSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSN 364

Query: 383 VRGSSTGILMPRISC 392
           V+ + +G  +P I C
Sbjct: 365 VKPTFSGKQVPAIKC 376

[Close]

BLAST of Lsi03G008820 vs. ExPASy TrEMBL
Match: A0A5A7T5V3 (Polygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00220 PE=3 SV=1)

HSP 1 Score: 709.1 bits (1829), Expect = 1.0e-200
Identity = 346/392 (88.27%), Postives = 365/392 (93.11%), Query Frame = 0


Query: 1   MAKFSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATA 60
           MA F  F  HF L +I+LFF+ASNAGNYNV+SFGAK + RT+STV FLKAWASACNS T 
Sbjct: 1   MANFPFFSTHFCLLLITLFFKASNAGNYNVLSFGAKGNERTDSTVPFLKAWASACNSPTP 60

Query: 61  STIYVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI 120
           STIYVPKG+FLIKG+VFKGPC NQITFRIDGT+VAPSDYR LGNS+SWILFSKVNKVSV+
Sbjct: 61  STIYVPKGRFLIKGIVFKGPCKNQITFRIDGTVVAPSDYRALGNSDSWILFSKVNKVSVV 120

Query: 121 GGILDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV 180
           GG LD KGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGC  VV
Sbjct: 121 GGTLDGKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCNNVV 180

Query: 181 VQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240
           VQNVKAIAPDQSPNTDGIHVQTS  VTI GCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH
Sbjct: 181 VQNVKAIAPDQSPNTDGIHVQTSKGVTIIGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240

Query: 241 GVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQ 300
           GVSIGSLGKEL E GVQNITLKNAIF+GSDNGIRIKTWARPSKGFVRNI+FDN+IMNNV+
Sbjct: 241 GVSIGSLGKELKEAGVQNITLKNAIFSGSDNGIRIKTWARPSKGFVRNIVFDNLIMNNVE 300

Query: 301 NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQD 360
           NPIVIDQ+YCPDNKGCPRQNSG+QISKVTYRNIRGTSAT EAV+FDCSITNPC DIKLQD
Sbjct: 301 NPIVIDQHYCPDNKGCPRQNSGVQISKVTYRNIRGTSATLEAVSFDCSITNPCTDIKLQD 360

Query: 361 IKLLYKNKAATSSCKNVRGSSTGILMPRISCL 393
           IKLLYKNKAATS CKNVRGSSTGILMPR SC+
Sbjct: 361 IKLLYKNKAATSYCKNVRGSSTGILMPR-SCM 391

[Close]

BLAST of Lsi03G008820 vs. ExPASy TrEMBL
Match: A0A1S3CPW9 (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103503343 PE=3 SV=1)

HSP 1 Score: 709.1 bits (1829), Expect = 1.0e-200
Identity = 346/392 (88.27%), Postives = 365/392 (93.11%), Query Frame = 0


Query: 1   MAKFSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATA 60
           MA F  F  HF L +I+LFF+ASNAGNYNV+SFGAK + RT+STV FLKAWASACNS T 
Sbjct: 1   MANFPFFSTHFCLLLITLFFKASNAGNYNVLSFGAKGNERTDSTVPFLKAWASACNSPTP 60

Query: 61  STIYVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI 120
           STIYVPKG+FLIKG+VFKGPC NQITFRIDGT+VAPSDYR LGNS+SWILFSKVNKVSV+
Sbjct: 61  STIYVPKGRFLIKGIVFKGPCKNQITFRIDGTVVAPSDYRALGNSDSWILFSKVNKVSVV 120

Query: 121 GGILDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV 180
           GG LD KGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGC  VV
Sbjct: 121 GGTLDGKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCNNVV 180

Query: 181 VQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240
           VQNVKAIAPDQSPNTDGIHVQTS  VTI GCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH
Sbjct: 181 VQNVKAIAPDQSPNTDGIHVQTSKGVTIIGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240

Query: 241 GVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQ 300
           GVSIGSLGKEL E GVQNITLKNAIF+GSDNGIRIKTWARPSKGFVRNI+FDN+IMNNV+
Sbjct: 241 GVSIGSLGKELKEAGVQNITLKNAIFSGSDNGIRIKTWARPSKGFVRNIVFDNLIMNNVE 300

Query: 301 NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQD 360
           NPIVIDQ+YCPDNKGCPRQNSG+QISKVTYRNIRGTSAT EAV+FDCSITNPC DIKLQD
Sbjct: 301 NPIVIDQHYCPDNKGCPRQNSGVQISKVTYRNIRGTSATLEAVSFDCSITNPCTDIKLQD 360

Query: 361 IKLLYKNKAATSSCKNVRGSSTGILMPRISCL 393
           IKLLYKNKAATS CKNVRGSSTGILMPR SC+
Sbjct: 361 IKLLYKNKAATSYCKNVRGSSTGILMPR-SCM 391

[Close]

BLAST of Lsi03G008820 vs. ExPASy TrEMBL
Match: A0A6J1EID8 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111434519 PE=3 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 1.0e-189
Identity = 328/381 (86.09%), Postives = 353/381 (92.65%), Query Frame = 0


Query: 13  LFIISLFFQAS-NAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFL 72
           LFII +FF  S  A  YNV+SFGAK DGRT ST  FLK WASACNSA  S+IYVPKG+FL
Sbjct: 9   LFIIIIFFPPSLGARTYNVVSFGAKPDGRTVSTAPFLKTWASACNSAAPSSIYVPKGRFL 68

Query: 73  IKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGASY 132
           +KG+VFKGPC NQITFRIDGT+VAPSDYR L +S+SWILFSKVNKVSV+GG LDA+GASY
Sbjct: 69  LKGIVFKGPCKNQITFRIDGTLVAPSDYRGLEDSDSWILFSKVNKVSVVGGTLDAQGASY 128

Query: 133 WACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQ 192
           WACK SGKNCPVGAPSMTFNWANNIVI+GLTSINSRQTHLVINGCKKV+VQNVKAIAPDQ
Sbjct: 129 WACKKSGKNCPVGAPSMTFNWANNIVINGLTSINSRQTHLVINGCKKVLVQNVKAIAPDQ 188

Query: 193 SPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKEL 252
           SPNTDGIHVQTSTDVTIT  TLQTGDDCVSIG GTYNLFM+NLKCGPGHGVSIGSLGKEL
Sbjct: 189 SPNTDGIHVQTSTDVTITSSTLQTGDDCVSIGAGTYNLFMSNLKCGPGHGVSIGSLGKEL 248

Query: 253 NEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCP 312
           NEDGVQNITLK++IFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNN +NPIVIDQNYCP
Sbjct: 249 NEDGVQNITLKDSIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNAKNPIVIDQNYCP 308

Query: 313 DNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKAAT 372
           DNKGCPRQ+SG+QISKVTYRNIRGTSATPE VNFDCS+TNPC++IKLQ+IKLLYKNKAA 
Sbjct: 309 DNKGCPRQSSGVQISKVTYRNIRGTSATPEGVNFDCSVTNPCKEIKLQNIKLLYKNKAAM 368

Query: 373 SSCKNVRGSSTGILMPRISCL 393
           SSCKNVRGS+  +LMPR SCL
Sbjct: 369 SSCKNVRGSANVMLMPR-SCL 388

[Close]

BLAST of Lsi03G008820 vs. ExPASy TrEMBL
Match: A0A6J1JPZ9 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111486684 PE=3 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 7.4e-188
Identity = 326/381 (85.56%), Postives = 351/381 (92.13%), Query Frame = 0


Query: 13  LFIISLFFQAS-NAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFL 72
           LFII +FF    +A +YNV+SFGAK DGRT ST  FLKAWASACNSA  S+IYVPKG+FL
Sbjct: 9   LFIIIIFFPPPLSALSYNVVSFGAKPDGRTVSTAPFLKAWASACNSAAPSSIYVPKGRFL 68

Query: 73  IKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGASY 132
           +KG+VF+GPC NQITFRIDGT+VAPSDYR LGNS+SWILFSKVNKV V+GG LDA+GASY
Sbjct: 69  LKGIVFRGPCKNQITFRIDGTLVAPSDYRGLGNSDSWILFSKVNKVFVVGGTLDARGASY 128

Query: 133 WACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQ 192
           WACK SGK+CPVGAPSMTFNWANNIVI+GLTSINSRQTHLVIN CKKV+VQNVKAIAPDQ
Sbjct: 129 WACKRSGKSCPVGAPSMTFNWANNIVINGLTSINSRQTHLVINACKKVLVQNVKAIAPDQ 188

Query: 193 SPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKEL 252
           SPNTDGIHVQTS DVTIT  TLQTGDDCVSIG GTYNLFMTNLKCGPGHGVSIGSLGKEL
Sbjct: 189 SPNTDGIHVQTSMDVTITSSTLQTGDDCVSIGAGTYNLFMTNLKCGPGHGVSIGSLGKEL 248

Query: 253 NEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCP 312
           NEDGVQNITLK++IFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNN +NPIVIDQNYCP
Sbjct: 249 NEDGVQNITLKDSIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNAKNPIVIDQNYCP 308

Query: 313 DNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKAAT 372
           DNKGCPRQ+SGIQISKV YRNIRGTSATPE VNFDCS+TNPCR+IKLQ+IKLLYKNKAA 
Sbjct: 309 DNKGCPRQSSGIQISKVMYRNIRGTSATPEGVNFDCSVTNPCREIKLQNIKLLYKNKAAM 368

Query: 373 SSCKNVRGSSTGILMPRISCL 393
           SSCKNVR S+  +LMPR SCL
Sbjct: 369 SSCKNVRRSANAMLMPR-SCL 388

[Close]

BLAST of Lsi03G008820 vs. ExPASy TrEMBL
Match: A0A6J1EQ32 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111434630 PE=3 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 4.8e-187
Identity = 322/381 (84.51%), Postives = 353/381 (92.65%), Query Frame = 0


Query: 13  LFIISLFFQAS-NAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFL 72
           LFII +FF  S +A +YNV+SFGAK DGRT ST  FLKAWASACNSA  S+IYVPKG+FL
Sbjct: 9   LFIIIIFFPPSLSARSYNVVSFGAKPDGRTVSTAPFLKAWASACNSAAPSSIYVPKGRFL 68

Query: 73  IKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGASY 132
           +KG+VFKGPC NQITFRIDGTIVAPSDYR LGNSNSWILFSKVNKVSV+GG LDA+GASY
Sbjct: 69  LKGIVFKGPCKNQITFRIDGTIVAPSDYRGLGNSNSWILFSKVNKVSVVGGTLDARGASY 128

Query: 133 WACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQ 192
           WACK SGK+CPVGAPSMTFNWANNIVIS LTSINS+QTHLVINGCKKV++QNVKAIAPDQ
Sbjct: 129 WACKRSGKSCPVGAPSMTFNWANNIVISRLTSINSQQTHLVINGCKKVLIQNVKAIAPDQ 188

Query: 193 SPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKEL 252
           SP+TDGIHVQ S+DVTIT  TLQTGDDCVSIGPGTYNLFMTNLKCGPGHG+SIGSLGK+ 
Sbjct: 189 SPHTDGIHVQISSDVTITDSTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGISIGSLGKDF 248

Query: 253 NEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCP 312
           NEDGVQNITLKN+IFT SDNGIRIKTWARPSKGFVRNILFDNIIMNNV+NPI+IDQNYCP
Sbjct: 249 NEDGVQNITLKNSIFTRSDNGIRIKTWARPSKGFVRNILFDNIIMNNVKNPIIIDQNYCP 308

Query: 313 DNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKAAT 372
           D+KGCPR+NSGIQISKVTY+NIRGTS T +AVNF+CS+TNPC++IKLQ+IKLLYKNKAA 
Sbjct: 309 DDKGCPRKNSGIQISKVTYKNIRGTSTTQKAVNFECSVTNPCKEIKLQNIKLLYKNKAAM 368

Query: 373 SSCKNVRGSSTGILMPRISCL 393
           SSCKNVRGS+   LMPR SCL
Sbjct: 369 SSCKNVRGSANAKLMPR-SCL 388

[Close]

BLAST of Lsi03G008820 vs. NCBI nr
Match: XP_038888673.1 (polygalacturonase-like [Benincasa hispida])

HSP 1 Score: 738.4 bits (1905), Expect = 3.2e-209
Identity = 359/391 (91.82%), Postives = 373/391 (95.40%), Query Frame = 0


Query: 1   MAKFSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATA 60
           MA F +F+IHFSL +I+LFF+ASNAGNYNV+SFGAKSDGR EST SFLKAWASACNSATA
Sbjct: 1   MANFPTFIIHFSLLLITLFFKASNAGNYNVLSFGAKSDGRRESTASFLKAWASACNSATA 60

Query: 61  STIYVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI 120
           STIYVPKGKFLI  +V KGPC NQITFRIDGTIVAPSDY  LGNS SWILFSKVNKVSVI
Sbjct: 61  STIYVPKGKFLINAIVLKGPCKNQITFRIDGTIVAPSDYGALGNSKSWILFSKVNKVSVI 120

Query: 121 GGILDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV 180
           GG+LDAKGASYWAC+TSGK CPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV
Sbjct: 121 GGVLDAKGASYWACRTSGKKCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV 180

Query: 181 VQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240
           VQNVK IAPDQSPNTDGIHVQTS+DVTI GCTLQTGDDCVSIGP TYNLFMTNLKCGPGH
Sbjct: 181 VQNVKTIAPDQSPNTDGIHVQTSSDVTIIGCTLQTGDDCVSIGPATYNLFMTNLKCGPGH 240

Query: 241 GVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQ 300
           GVSIGSLGKELNEDGVQNITLKN IFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNV+
Sbjct: 241 GVSIGSLGKELNEDGVQNITLKNTIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVE 300

Query: 301 NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQD 360
           NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSAT EAV+FDCSITNPCRDIKLQD
Sbjct: 301 NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATSEAVSFDCSITNPCRDIKLQD 360

Query: 361 IKLLYKNKAATSSCKNVRGSSTGILMPRISC 392
           IKLLYKNKAATSSCKNVRGSS+GILMPR+SC
Sbjct: 361 IKLLYKNKAATSSCKNVRGSSSGILMPRMSC 391

[Close]

BLAST of Lsi03G008820 vs. NCBI nr
Match: XP_008465729.1 (PREDICTED: polygalacturonase-like [Cucumis melo] >KAA0038874.1 polygalacturonase-like [Cucumis melo var. makuwa] >TYJ96014.1 polygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 709.1 bits (1829), Expect = 2.1e-200
Identity = 346/392 (88.27%), Postives = 365/392 (93.11%), Query Frame = 0


Query: 1   MAKFSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATA 60
           MA F  F  HF L +I+LFF+ASNAGNYNV+SFGAK + RT+STV FLKAWASACNS T 
Sbjct: 1   MANFPFFSTHFCLLLITLFFKASNAGNYNVLSFGAKGNERTDSTVPFLKAWASACNSPTP 60

Query: 61  STIYVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI 120
           STIYVPKG+FLIKG+VFKGPC NQITFRIDGT+VAPSDYR LGNS+SWILFSKVNKVSV+
Sbjct: 61  STIYVPKGRFLIKGIVFKGPCKNQITFRIDGTVVAPSDYRALGNSDSWILFSKVNKVSVV 120

Query: 121 GGILDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV 180
           GG LD KGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGC  VV
Sbjct: 121 GGTLDGKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCNNVV 180

Query: 181 VQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240
           VQNVKAIAPDQSPNTDGIHVQTS  VTI GCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH
Sbjct: 181 VQNVKAIAPDQSPNTDGIHVQTSKGVTIIGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240

Query: 241 GVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQ 300
           GVSIGSLGKEL E GVQNITLKNAIF+GSDNGIRIKTWARPSKGFVRNI+FDN+IMNNV+
Sbjct: 241 GVSIGSLGKELKEAGVQNITLKNAIFSGSDNGIRIKTWARPSKGFVRNIVFDNLIMNNVE 300

Query: 301 NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQD 360
           NPIVIDQ+YCPDNKGCPRQNSG+QISKVTYRNIRGTSAT EAV+FDCSITNPC DIKLQD
Sbjct: 301 NPIVIDQHYCPDNKGCPRQNSGVQISKVTYRNIRGTSATLEAVSFDCSITNPCTDIKLQD 360

Query: 361 IKLLYKNKAATSSCKNVRGSSTGILMPRISCL 393
           IKLLYKNKAATS CKNVRGSSTGILMPR SC+
Sbjct: 361 IKLLYKNKAATSYCKNVRGSSTGILMPR-SCM 391

[Close]

BLAST of Lsi03G008820 vs. NCBI nr
Match: XP_004143823.1 (polygalacturonase [Cucumis sativus] >KAE8648487.1 hypothetical protein Csa_008781 [Cucumis sativus])

HSP 1 Score: 707.2 bits (1824), Expect = 7.8e-200
Identity = 342/392 (87.24%), Postives = 367/392 (93.62%), Query Frame = 0


Query: 1   MAKFSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATA 60
           MA F  F IHF L +I+LFFQAS+AGNYNVISFGAK D RT+STVSFLKAWASAC S   
Sbjct: 1   MANFPFFSIHFCLLLITLFFQASSAGNYNVISFGAKGDERTDSTVSFLKAWASACTSPKP 60

Query: 61  STIYVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVI 120
           STIYVPKG+FLIKG+VFKGPC NQITF+IDGT+VAPSDYR LGNS+SWILFSKVNKVSV+
Sbjct: 61  STIYVPKGRFLIKGIVFKGPCKNQITFQIDGTVVAPSDYRALGNSDSWILFSKVNKVSVV 120

Query: 121 GGILDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVV 180
           GG LD KGASYWACKTSGKNCPVG PSMTFNWANNIVISGLTSINSRQTHLVINGC  VV
Sbjct: 121 GGTLDGKGASYWACKTSGKNCPVGVPSMTFNWANNIVISGLTSINSRQTHLVINGCNNVV 180

Query: 181 VQNVKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240
           V+NVKAIAPDQSPNTDGIHVQTS  VTI GCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH
Sbjct: 181 VRNVKAIAPDQSPNTDGIHVQTSKGVTIIGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGH 240

Query: 241 GVSIGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQ 300
           GVSIGSLGKEL EDGVQNI+LKN++F+GSDNGIRIK+WARPSKGFVRNI+FDNI+M+NV+
Sbjct: 241 GVSIGSLGKELKEDGVQNISLKNSVFSGSDNGIRIKSWARPSKGFVRNIVFDNIVMDNVE 300

Query: 301 NPIVIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQD 360
           NPIVIDQNYCPDNKGCPRQNSGI+ISKVTYRNIRGTSATPEAV+FDCSITNPC DIKLQD
Sbjct: 301 NPIVIDQNYCPDNKGCPRQNSGIRISKVTYRNIRGTSATPEAVSFDCSITNPCTDIKLQD 360

Query: 361 IKLLYKNKAATSSCKNVRGSSTGILMPRISCL 393
           IKLLYKNKAA+SSC+NVRGSSTGILMPR SC+
Sbjct: 361 IKLLYKNKAASSSCRNVRGSSTGILMPR-SCM 391

[Close]

BLAST of Lsi03G008820 vs. NCBI nr
Match: XP_023531179.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 676.8 bits (1745), Expect = 1.1e-190
Identity = 328/381 (86.09%), Postives = 354/381 (92.91%), Query Frame = 0


Query: 13  LFIISLFFQAS-NAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFL 72
           LFII +FF  S  A  YNV+SFGAK DGRT ST  FLKAWASACNSA  S+IYVPKG+FL
Sbjct: 9   LFIIIIFFPPSLGARTYNVVSFGAKPDGRTVSTAPFLKAWASACNSAAPSSIYVPKGRFL 68

Query: 73  IKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGASY 132
           +KG++FKGPC NQITFRIDGT+VAPSDYR LG+S+SWILFSKVNKVSV+GG LDA+GASY
Sbjct: 69  LKGIMFKGPCKNQITFRIDGTLVAPSDYRGLGDSDSWILFSKVNKVSVVGGTLDAQGASY 128

Query: 133 WACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQ 192
           WACK SGKNCP+GAPSMTFNWANNIVI+GLTSINSRQTHLVINGCKKV+VQNVKAIAPDQ
Sbjct: 129 WACKKSGKNCPIGAPSMTFNWANNIVINGLTSINSRQTHLVINGCKKVLVQNVKAIAPDQ 188

Query: 193 SPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKEL 252
           SPNTDGIHVQTSTDVTIT  TLQTGDDCVSIG GTYNLFMTNLKCGPGHGVSIGSLGKE 
Sbjct: 189 SPNTDGIHVQTSTDVTITSSTLQTGDDCVSIGAGTYNLFMTNLKCGPGHGVSIGSLGKEF 248

Query: 253 NEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCP 312
           NEDGVQNITLK++IFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNN +NPIVIDQNYCP
Sbjct: 249 NEDGVQNITLKDSIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNAKNPIVIDQNYCP 308

Query: 313 DNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKAAT 372
           DNKGCPRQ+SG+QISKVTYRNIRGTSATPE VNFDCS+TNPC++IKLQ+IKLLYKNKAA 
Sbjct: 309 DNKGCPRQSSGVQISKVTYRNIRGTSATPEGVNFDCSVTNPCKEIKLQNIKLLYKNKAAM 368

Query: 373 SSCKNVRGSSTGILMPRISCL 393
           SSCKNVRGS+  +LMPR SCL
Sbjct: 369 SSCKNVRGSANAMLMPR-SCL 388

[Close]

BLAST of Lsi03G008820 vs. NCBI nr
Match: XP_022927701.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 672.5 bits (1734), Expect = 2.1e-189
Identity = 328/381 (86.09%), Postives = 353/381 (92.65%), Query Frame = 0


Query: 13  LFIISLFFQAS-NAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKFL 72
           LFII +FF  S  A  YNV+SFGAK DGRT ST  FLK WASACNSA  S+IYVPKG+FL
Sbjct: 9   LFIIIIFFPPSLGARTYNVVSFGAKPDGRTVSTAPFLKTWASACNSAAPSSIYVPKGRFL 68

Query: 73  IKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGASY 132
           +KG+VFKGPC NQITFRIDGT+VAPSDYR L +S+SWILFSKVNKVSV+GG LDA+GASY
Sbjct: 69  LKGIVFKGPCKNQITFRIDGTLVAPSDYRGLEDSDSWILFSKVNKVSVVGGTLDAQGASY 128

Query: 133 WACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPDQ 192
           WACK SGKNCPVGAPSMTFNWANNIVI+GLTSINSRQTHLVINGCKKV+VQNVKAIAPDQ
Sbjct: 129 WACKKSGKNCPVGAPSMTFNWANNIVINGLTSINSRQTHLVINGCKKVLVQNVKAIAPDQ 188

Query: 193 SPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKEL 252
           SPNTDGIHVQTSTDVTIT  TLQTGDDCVSIG GTYNLFM+NLKCGPGHGVSIGSLGKEL
Sbjct: 189 SPNTDGIHVQTSTDVTITSSTLQTGDDCVSIGAGTYNLFMSNLKCGPGHGVSIGSLGKEL 248

Query: 253 NEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYCP 312
           NEDGVQNITLK++IFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNN +NPIVIDQNYCP
Sbjct: 249 NEDGVQNITLKDSIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNAKNPIVIDQNYCP 308

Query: 313 DNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKNKAAT 372
           DNKGCPRQ+SG+QISKVTYRNIRGTSATPE VNFDCS+TNPC++IKLQ+IKLLYKNKAA 
Sbjct: 309 DNKGCPRQSSGVQISKVTYRNIRGTSATPEGVNFDCSVTNPCKEIKLQNIKLLYKNKAAM 368

Query: 373 SSCKNVRGSSTGILMPRISCL 393
           SSCKNVRGS+  +LMPR SCL
Sbjct: 369 SSCKNVRGSANVMLMPR-SCL 388

[Close]

BLAST of Lsi03G008820 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 540.0 bits (1390), Expect = 1.5e-153
Identity = 250/385 (64.94%), Postives = 316/385 (82.08%), Query Frame = 0


Query: 8   LIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPK 67
           L+ FS F+  L   ++ A NYNV+SFGAK DGRT+ST +FL AW +AC SA A T+ VP+
Sbjct: 11  LMFFSSFL--LMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPR 70

Query: 68  GKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAK 127
           G FL+K V F+GPC ++ITF+I GTIVAPSDYR LGNS  WILF KVN++S+IGG LDA+
Sbjct: 71  GSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDAR 130

Query: 128 GASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAI 187
           GAS+WAC+ SGK+CPVGA SMTFNWAN++V+SGLTSINS+ THLVIN C  V+V+ VK +
Sbjct: 131 GASFWACRKSGKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLV 190

Query: 188 APDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSL 247
           APDQSPNTDG+HVQ S  VT+T  T  TGDDC+SIGPGT NL+M+ L CGPGHG+SIGSL
Sbjct: 191 APDQSPNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSL 250

Query: 248 GKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQ 307
           G++ NE GV+NITL N++F+GSDNG+RIKTWAR S GFVRN+LF N+IM NVQNPI++DQ
Sbjct: 251 GRDANEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQ 310

Query: 308 NYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLYKN 367
           NYCP N+GCP+Q SG++IS+V YRNI+GTS T +A+ FDCS +NPC+ I+L DIKL +  
Sbjct: 311 NYCPSNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLTFNG 370

Query: 368 KAATSSCKNVRGSSTGILMPRISCL 393
           ++ATS+CKN++G   G++MP+  CL
Sbjct: 371 RSATSTCKNIKGVKAGVVMPQ-GCL 392

[Close]

BLAST of Lsi03G008820 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 480.7 bits (1236), Expect = 1.1e-135
Identity = 220/383 (57.44%), Postives = 295/383 (77.02%), Query Frame = 0


Query: 13  LFIISLFFQASNAGN--YNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYVPKGKF 72
           +F +  F   S++ +  +NV+SFGAK DG T+ST +FLKAW  AC SA ++T+ VP G F
Sbjct: 11  IFTLLTFIDVSSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASATVVVPTGTF 70

Query: 73  LIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGILDAKGAS 132
           L+K + F GPC ++ITF++ GT+VAP DYRT GNS SWILF+KVN+ S++GG  DA+G+ 
Sbjct: 71  LLKVITFGGPCKSKITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVGGTFDARGSG 130

Query: 133 YWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNVKAIAPD 192
           +W+C+ SG+NCP G  S++FN A +++ISG+ S+NS+ +H+ +NGC  V V+N++ +AP 
Sbjct: 131 FWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPG 190

Query: 193 QSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKE 252
            SPNTDG  VQ ST VT+TG T+QTGDDCV+IG GT N  ++ L CGPGHGVSIGSL K+
Sbjct: 191 DSPNTDGFTVQFSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGVSIGSLAKQ 250

Query: 253 LNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIVIDQNYC 312
           LNEDGV+N+T+ +++FTGS NG+RIK+WARPS GFVRN+ F N+IM NVQNPI+IDQNYC
Sbjct: 251 LNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYC 310

Query: 313 PDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLLY-KNKA 372
           P N+GCP ++SG++I++VTY+NI+GTSAT EA+   CS +NPC  I LQDIKL Y K   
Sbjct: 311 PSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTYNKGTP 370

Query: 373 ATSSCKNVRGSSTGILMPRISCL 393
           ATS C N  G + G++ P  SCL
Sbjct: 371 ATSLCFNAVGKNLGVIQP-TSCL 392

[Close]

BLAST of Lsi03G008820 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 479.2 bits (1232), Expect = 3.2e-135
Identity = 226/389 (58.10%), Postives = 295/389 (75.84%), Query Frame = 0


Query: 8   LIHFSLFIISLFF---QASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIY 67
           +I FSL    L F     S +  +NV+SFGAK DG T+ST +FLKAW  AC SA+++T+ 
Sbjct: 5   VIRFSLLFTLLTFIDVSISASNVFNVVSFGAKPDGVTDSTGAFLKAWQGACVSASSATVV 64

Query: 68  VPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGIL 127
           VPKG FL+K + F GPC ++ITF++ GT++AP DYRT GNS  WILF+KVN+ S++GG  
Sbjct: 65  VPKGTFLLKVITFGGPCKSKITFQVAGTVIAPEDYRTFGNSGFWILFNKVNRFSLVGGTF 124

Query: 128 DAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQNV 187
           DA+   +W+C+ SG+NCP G  S++FN A +++ISG+ S+NS+ TH+ +NGC  VVV+NV
Sbjct: 125 DARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVTHMTLNGCTNVVVRNV 184

Query: 188 KAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSI 247
           K +AP  SPNTDG HVQ ST VT TG T+QTGDDCV+IGPGT NL +T L CGPGHGVSI
Sbjct: 185 KLVAPGNSPNTDGFHVQHSTGVTFTGSTVQTGDDCVAIGPGTRNLLITKLACGPGHGVSI 244

Query: 248 GSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPIV 307
           GSL KEL EDGV+N+T+ +++FTGS NG+RIK+WARPS GFVR + F +++M NV+NPI+
Sbjct: 245 GSLAKELKEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPII 304

Query: 308 IDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKLL 367
           IDQNYCP ++GCP + SG++IS+VTY+NI+GTSAT EA+   CS ++PC  I LQDIKL 
Sbjct: 305 IDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLT 364

Query: 368 Y-KNKAATSSCKNVRGSSTGILMPRISCL 393
           Y K   ATS C N  G S G++ P  SCL
Sbjct: 365 YNKGTPATSFCFNAVGKSLGVIQP-TSCL 392

[Close]

BLAST of Lsi03G008820 vs. TAIR 10
Match: AT2G43880.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 456.1 bits (1172), Expect = 2.9e-128
Identity = 201/385 (52.21%), Postives = 291/385 (75.58%), Query Frame = 0


Query: 4   FSSFLIHFSLFIISLFFQASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTI 63
           F   +I FS+ I  L   +    ++NV  +GA+ DGR ++T SFL AW+ AC S   + +
Sbjct: 7   FPCAIIFFSINIFFLIKSSHAMPSFNVQRYGARGDGRADATKSFLTAWSLACGSRARAMV 66

Query: 64  YVPKGKFLIKGVVFKGPCNNQITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGI 123
           YVP+G +L+K +VF GPC N ITF+ DGT+VAP++Y  +GNS  WILF+KVN++SV GG 
Sbjct: 67  YVPRGTYLVKNLVFWGPCKNIITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISVYGGT 126

Query: 124 LDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQN 183
           +DA+GA YW+C+  G +CP GA S++F+W NN+++SGL+S NS+  H+ ++    V ++N
Sbjct: 127 IDARGAGYWSCRKKGSHCPQGARSISFSWCNNVLLSGLSSFNSQNMHVTVHHSSNVRIEN 186

Query: 184 VKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVS 243
           V+  AP  SPNTDGIHVQ+S+ VTI+G T+ TGDDC+++  G+ N+++  + CGPGHG+S
Sbjct: 187 VRIRAPSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGIS 246

Query: 244 IGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPI 303
           IGSLG   NE+GVQN+T+ +++FT + NG+RIKTWARPS+GFV N++F N+IMNNV+NP+
Sbjct: 247 IGSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPV 306

Query: 304 VIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKL 363
           +IDQNYCP+ KGCPRQ+SG++IS VT+ NI+GTS TP A+  DCS +N C  ++LQDIKL
Sbjct: 307 IIDQNYCPNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSNHCTGLRLQDIKL 366

Query: 364 LYKNKAATSSCKNVRGSSTGILMPR 389
            Y  +++ S C+N  G ++G+++PR
Sbjct: 367 TYMRRSSASYCRNAHGRASGVMVPR 391

[Close]

BLAST of Lsi03G008820 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 452.2 bits (1162), Expect = 4.2e-127
Identity = 221/389 (56.81%), Postives = 279/389 (71.72%), Query Frame = 0


Query: 9   IHFSLFIISLFF---QASNAGNYNVISFGAKSDGRTESTVSFLKAWASACNSATASTIYV 68
           +H SL I+ LF     +S+A  YN++S+GAK DG+T+ST +F   WA AC S    TI V
Sbjct: 1   MHSSLLIVLLFLLSVSSSSAQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPVTILV 60

Query: 69  PKGKFLIKGVVFKG-PCNNQ-ITFRIDGTIVAPSDYRTLGNSNSWILFSKVNKVSVIGGI 128
           PKG+FL++ ++F G  C  + +TFRI GT+VAPSDYR +G  N WILF  ++ +SV GG+
Sbjct: 61  PKGRFLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGV 120

Query: 129 LDAKGASYWACKTSGKNCPVGAPSMTFNWANNIVISGLTSINSRQTHLVINGCKKVVVQN 188
           LDA+GAS W+CK SGKNCP GA S+ F  + N+VISGLTS+NS+  H+ INGC  V +  
Sbjct: 121 LDAQGASLWSCKKSGKNCPSGATSIGFQSSRNVVISGLTSLNSQMFHVAINGCSNVKLDG 180

Query: 189 VKAIAPDQSPNTDGIHVQTSTDVTITGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVS 248
           VK  A   SPNTDGIHVQ+S+ V+I    + TGDDCVSIGPGT  L++ N+ CGPGHG+S
Sbjct: 181 VKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGIS 240

Query: 249 IGSLGKELNEDGVQNITLKNAIFTGSDNGIRIKTWARPSKGFVRNILFDNIIMNNVQNPI 308
           IGSLGKE  E GVQNIT+K A FTG++NG+RIK+WARPS GF +NI F + +MNNVQNPI
Sbjct: 241 IGSLGKESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPI 300

Query: 309 VIDQNYCPDNKGCPRQNSGIQISKVTYRNIRGTSATPEAVNFDCSITNPCRDIKLQDIKL 368
           VIDQNYCP N+ CP Q SGI+IS V + +I GTSAT   V  DCS   PC  I++QD+KL
Sbjct: 301 VIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTGIRIQDVKL 360

Query: 369 LYKNKAATSSCKNVRGSSTGILMPRISCL 393
            Y+NK AT+ C +  GS  G   P  SCL
Sbjct: 361 TYRNKPATTDCSHAGGSEAGFQRPN-SCL 388

The following BLAST results are available for this feature:

BLAST of Lsi03G008820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	1.6e-126	57.84	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
O22818	1.0e-101	48.61	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
Q39786	8.4e-80	40.83	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
Q39766	1.9e-79	40.83	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q6H9K0	1.3e-77	40.27	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]

BLAST of Lsi03G008820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5V3	1.0e-200	88.27	Polygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3CPW9	1.0e-200	88.27	polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103503343 PE=3 SV=1	[more]
A0A6J1EID8	1.0e-189	86.09	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111434519 PE=3 SV=1	[more]
A0A6J1JPZ9	7.4e-188	85.56	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111486684 PE=3 SV=1	[more]
A0A6J1EQ32	4.8e-187	84.51	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111434630 PE=3 SV=1	[more]

BLAST of Lsi03G008820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888673.1	3.2e-209	91.82	polygalacturonase-like [Benincasa hispida]	[more]
XP_008465729.1	2.1e-200	88.27	PREDICTED: polygalacturonase-like [Cucumis melo] >KAA0038874.1 polygalacturonase...	[more]
XP_004143823.1	7.8e-200	87.24	polygalacturonase [Cucumis sativus] >KAE8648487.1 hypothetical protein Csa_00878...	[more]
XP_023531179.1	1.1e-190	86.09	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022927701.1	2.1e-189	86.09	polygalacturonase-like [Cucurbita moschata]	[more]

BLAST of Lsi03G008820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43890.1	1.5e-153	64.94	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	1.1e-135	57.44	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	3.2e-135	58.10	Pectin lyase-like superfamily protein	[more]
AT2G43880.1	2.9e-128	52.21	Pectin lyase-like superfamily protein	[more]
AT3G59850.1	4.2e-127	56.81	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 203..224 e-value: 15.0 score: 14.5 coord: 286..307 e-value: 4400.0 score: 2.6 coord: 256..277 e-value: 16.0 score: 14.4 coord: 153..202 e-value: 1000.0 score: 7.2 coord: 320..347 e-value: 6600.0 score: 1.4
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 18..388 e-value: 3.4E-114 score: 384.0
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 55..378 e-value: 1.8E-86 score: 290.2
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 233..246
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 13..387
None	No IPR available	PANTHER	PTHR31375:SF31	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 13..387
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 18..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G008820.1	Lsi03G008820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity