Lsi03G008810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G008810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein Ycf2
Locationchr03: 15267444 .. 15275028 (-)
RNA-Seq ExpressionLsi03G008810
SyntenyLsi03G008810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAACACGCTTTTTCGACCGCGGTGGTATGTTTGTCGGGCCCTCTCCTTGTTCCGTGAAGAAATTAACAAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCATCGGTTGTTCAAGACCTTTCGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAATGATTCTGTTGGGATCCTCACGGACAAAAATGATTCTGTTGGGATCCTCACGGACAAAAAAATTTAACTCCTATAGAAAGCGATAGAATTCTATTGCGGTCTATCACTAATAGACTGTAAAAATTTTCTATATTTGTAAATAGTTTGATATTTTTTTCTATTTATAGTAATTTCCCTTATTATTTTGTAATATTATATAATTTATGGGATAAATAAAAAAAATTTGTCTCTATGATGTGAAAGAAGTTAAAATTTAGATCTTAGGGTATATAATTAGAATTTAACTCCTATGATTCGATAAAAAAATCATAAATAATTCCTATGGCAAGGATCATTAAAGAGGATTTAACAAACCATAGGGATAATATTGAAGTTGTATTAAACCATAAATGCTAAATTTTAGAACCATATGAACTAACTTGTAACTTTATCCCAATCATAGGGACCAAATTTGGAATTTAACCTAATTTATAATAATTACATAATGCATATTTTAATTTAAAAAATTAAATTGAGTTTATAACGTGACATACTATATTTCTAAATATTTTTATCTTTATTTAATATAATTCTGCATCTTAAATTTTAAAATTCAAATTCTGGATACATAAATACCCCTTTGAGCCTCAAGGGTTCTTCTTTCAGGTCTTTTTCGTGGCGGTGATTGAGTCTAGTGAGATTCCACCTGAGATGCAAGCACAACCTTAAATCAATGTTCTTCTACTTTAGTGATTCTCTATGTCTCTTCTTCTTCTTCTCTCTTGGCCTCCTCTGCATGTTTTTTTTTTTTTTTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTGCCTTCATCTCCTTTGTTGTTTTAACTACAACTCCCCTAGCAATTGTCATAATATTTCTCCATGTTGCACGTTGAACTCATAATTTCTCCTCACTTGGTTGATTCACCTCTTTGTAAAAGTCTACGGAGGACTCCTTGCTCCATGTTTGTCGAGCTATCATGTGCGTGGATAACATTTTGATCATACTCTTGCTAGGAGAAGGTTTAAGAGATGGTTCCTGCAAAGGCAAAATAGAAATTGAACATGTTGTAGATTGCGTCAAGGTTGCTGGCACAATGTGGCTACAATTTCTCCTTCTCGCTTTTCTTTCAGTTTGTGTAATGTTACGACCACAATACGACCATAGTTTTCTTCAACCTACATATTAATTTCCTAACTACTTTTTTTTTATCAATTTATTTTTACCAAAGCCTAAGACTCCAAAGTAGACCATCAAAAAGTTCATACAATCTTAAATGGATTGAGAAGAAGAAATATTTATGAGAGAAGGTTGTAGTAATTTGTAAGAAAAAGATTGATTGACTCAACTCCTAAGTGAATCTTTAGGTAGAAGTGTCCCCTAAACGGTCAGCTTAAATACCTCAATCCTAGACAATACTCTCCTAGATAGAGTTCTTTCTTGATCAATATTTATATTGTTGGGACTGGTGTCCTAAATCTGTAGTTTCCTGTTGTTTGTAATCTTGTAAATACAAATTATTGTATCAATAAAATAAAGAATTGTTTTATTTGATTCTTGTTGCATTAACTCAAATCCAATAAACAAGATCCATGGTTATTTCATATAAAATTAAACATGTATGTGGTTGTCATTTGATAACTTGTAGAAATACAAGTTATTTTACTTCTGTTTCTTCGAATAAAGATGGATGATTAGTGAAAAGAACATCATTTCAATGCATGAATCTCTGATATATTCTTATTATGCGTGCAAGTGTATGAAAGAGAAAAAGAGGTTATTTTTTTAGAATTGACGCCCTTGAACGTTTTGTTTTGCAGGAAAACATTATCGCAACCATGCGTCGAAACCTACATCAACGCATGACTAATAAAGACAAAGTCTATTATTTCAGAAAACCTGACCATGACAGTTGTGCCAGAGAATTTTCAGTACCTTGAGCCGTTAGACAGAGACGGACTGCACGGTCAGAAAGGACGGAGCAGAACGCGTTGTGGGCCCGTCTTGCGTCAATATGAAAAGTATTACAATGAGGGCTATAAAAGCCACCCAAAGGGAGAAAATCGATACAGAAAAACCTAGAAAAAAATTAGGGTTAGCAGCAATCAGTTTTGGGGAGAGCGCCGTCGCACATCATCTTCTTCCTCCTCGCGGCGACAATCGAGAGGATCAACTACATTCAACCAAAGGAAACCTGGTGAACTGAGTCTCGACAGAGAAGAGGATTCCACCACTATCTTCCATTGTCACCAGCAATTTTAGCGATACATCTTCACTGTCGGCGAGCAGGACACTCCCTTCGACAGCCCCATCTCTCAACCCTTTTATCATTTATTTGTATCACCAAAGTGTTTAGCTATTTGTACTGCCTGTAGAACAAGAGCATCAAATCATTATCATTTTAATATACGCTTATTTCCATCTCTATCAAAAATCAATTGTCCATCATGTTTGCGATTATCCCACAAATGTTTATGAGTAGCTAAGCATCTATGAGTGTTGGAGGCTAACATTCATCAGTCTTGATAAATCTAGTCTAATAACTAGGTTATTTATAGCAATGCAGTGTTAATCATTCGTGCTTATCTTAACGTGAGAACGTTGATTAAGTACCAACAGTTGGCTACTCGAGAGAGCAAGCAATTAGAGGTCACATTGTTGTAACTAAGAAGTTAATCTTAGACATAGGAATTATCTTAGGCTCATTTAAACAAGCACGCATCATAAACATATGACTCGTGTGGCTCTTCTGCCGAAAGGTATAACTCATTTATGTTTGAAAGCATGATCTACGTAATTAAACTAGGATTAGACAGATTGATGAAGGATTGTCTCCAACACTCTCTTATCTATCTAGCATAACATCACTGAACTTGCATTATTCATCAGTAATCCCCATGATTATAGCTGCAAGCCAATAGTTAAGTTTGTTTAATCTATATATTTCGAATCAAAATCTCATTTTATTTGTTCATTTCCTTGAGATTTCCAATTTATTCAGTTATTTACTTACAAAATCTCTGTGTTCAACCTTGGTCCTCACCAAGAAATCTTTGTATTAGTTTATACTTGGACTGATATTAAGAAAAACTTGAGAAATTAAGAATATAATAAATCGAGAGAATAAAATCGAAGACACCAACATTCAAGGTTGGATCATGTTTAAGTAATAACTAGAAAGGTCTGTAGTATAGGGGATAAGGTTGGGTGCCTTAACCTGGTAATACTACGGATACGACCCACTTTGTAATTGTTACAAAAGTTGTAAAGTGTTACAAATGACGTGATCTTAATCGTTTATGTGGAGACATATGAGTGGGGGTATCCTATGCAAAGAGTTTGTATAAGACCGAACTGCGAAATATTCAATCTCTCCTTATAACACTGTTAATTGAAGAAATTAACATTTCATAGGATGGTCATAGGTAACTAGACCTTAATCCTGAGTGAGTTATGAACTCCTGCCTATGAGGGCAATTCTTTGATCTGTATGGGTGAGAGTGACTAGAACGCTGACTCAATAAGCCTACCATTTTGGAGATTTGCTCGAGTAGGGAGCTGGGAACATATCTTTCACAAGATGGAATTCACTCCTTCCCTTCTTTAGGGTAAGTAGATAATTGCAACCTTAAGGGCTGATTTTGGGTCTTAAATAATAAAATAATATTATTTTTTTCACTTATCCTGATTTTTCTTAAAAAAACTATATGAATCCCTATTCATATAATTAAATTTAAATCATATTTAAATATTATAATTAACTTTAATTGTCCATTTAATTCGTAATTAAACGTCGATATATCGTATATATCCGACTTTCATTCCTTAAGCCAAGATTGAACGGTTCAAACTTACTTACCACACTATCTAAGGTTTTTGTCCATTAATTAGCTAGTAGAGGGACTTAATGGTCCTACAGATCATGACCTCCAACGATTTGAGATTAACCGGCCGAACTCTTTAACCTAGTTAACCAACATTCTTAACTAACGGGACACTTTACTAAAGCCCGTAGCTGCACTCTCCTCACTGTATATATATTTTTGTCCACTTGATATAACCATAATTAGTAAGTCAATCCTTCACAGGTTGTCCGTAATCACAGCAAGATCAAAATTACCATTTTACCCCTGTGATTACATCTTGTTCCTTAAGTCTCGCTAATCCTCTAATGAACAATTGGTTTGTGATCCTATCACTAACTAAGTCCCTCTCGGGCTAATGAGAGGGTGGGACCCTTTGAGACCCAAAATCAGTACTTAAGGGAACAACCTATCTACTAACCCTAAGTCAGGTAGGAGTGAATTCCTTCTCGCAAAACTATGTCTTTAACTATTTACTCGGTCTTACCTCTAAAATGGGAGGCTTACTGAGTCGGCGCACCCGGGCCACTCTCACCCATGTAGATCTAAGGATAATTCTGAATAAACAGGAGTTTATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCTAGTTGAAATAGTCAGTATTTAACATTAAACGGCGTTATAAAGTAATAGTGACTATTTCGTGGTCCAATCTTATGCAAACGCATTGCATATAACACCCTCACTCATATGTCTCCACGTGAATGATTTAGGATCACATCATTTGTATCAAATACAAAGTGGGTCGCATTCAATAGTGTCCCCAAGATAAGGTACCCAGCCTTATCCCTATACTATAGACCATTTTGGCTATTTACTCAAACTTGATCCATTTTTATGTCATTACATAAAGTTCAAGTTTTCATGCTAAAGTCATGGGTTCTTAGTTTATTGGATTTAGAGTTATATTAACAACAATTCACTTTATTCAATAACAAGTTTATTGAATAACATCGATAATAACTTTATTGATAAATAGAAAATACGTTAATGTTTACAATCGACGCGTTTTAGGACATAAAATCCAACAATGCAAATAGAATATATAATATAAAAATAACAAATTATTTTATTAATCAACAGAAATTTGTTTATTTATTTACAAACCATGAATTTAGGGCATAAAACCGAACATTTATAAGTATCACCTTGCATTTTTCTTTTTCTATTCGTTCCAAAGTGTTGGTGTTGTTAAGCACAGTTTAACGCGGTTGACTTTGAATCTCAACATCAGCTTTCTCCATATGCTCTTTGATGTTGATGTTCTGGGTTGGTACTTGTGTAATCATTTGTTGATGCACTCTTTTCTAGGTATGCTGACGAGGGTTCAACAAGCTTTGATTACCTAGTTGCCTAATCTACCATAAGGAATCATGGTTATAAGGGCAATTTTCAAATAAATGACTTCCTCTATAATATATACAAGTAATAGACATATCAAGATTGATGGACAATGTTTAAAAAAATGATATTTGCCCCAAATCAAAATGAAGATATTAAAGATTTGATAGACAGGGGAAAAGGGGATATTGTCTCCCATAATTAGATTTTGTAAAATGATGCTCATCTCTGCCACTTCCATGTGCAATGTTGCAAGGCTATCTACTTCCATGTCTTGTGGATTATCTTGAGTCCTTAACTTGTTACTGGTTTTGCACAATAGGAGGATTGACTCCAGCTAGATTCATTTGGATTACCACTGTAACCTTCACTTTTGAGCTCAACACTTATTGTTCATTTGCTTTTCTCCTTTGCTCCTTACGATGCTGGAGAAAAATCCTCTCTATTTTTCGATTGATAGCTCTTTTAGGAGAGCTATCTTTTCTAGCTTAAATCGTGTTCATTTTTAAGAATTTAATGTTTCTATGTTTATACTTGTAGGAAATCGAGCATAACATACATTTTGGAGCATTAAGAGTGATTCAAGGTAAATTTTGAGCTTTTGGGATCTTAATTGAGCAACAGAACTTTAAAAAGTTGAAGAGAAAAAAATGCCGCTGTTTGAATGTTGCAACGTCATGTCACGCTCAGCTGAACTCTTAAAGACAAGGTCAAATCGTTGCAATGCTCCTTTATAGCATCTCGAAGAAAAATGAAGCGAAATGTCGAGTAATGCTGCAGGGCACTAGGGTCTCTTTGAGCAGCATCACGATACTACTCTTAGAGTGTTGTGACACAAATGATCATTTCATCTTTTAGGTCATGAATTGGGTCGTCCAGCCCTCACCCCCATTTTTCTCTTCCATTTCTTAGTGTCTTAGCTTTTTCTTTAGTTTTTACTTGTAATCAAGTTGAATGATGTCGAGTTTTACCTTCTTCATCACCACTTATGTAATAACGTAATTGCTTCTCTATTGAAGAATTATGATGCTCAATACCGTATTGTCACCCCATACCACCCTCAAACTAATGGACAGGCGGAGGTCTCAAATAGAGAGGTGAAGACTATCTTAGAGAAGGTGGTGAGTCCCAACAGAAAGGACTGGAGCTTACAATTGGATGATGTGCTTTAGGCTTATTGCATGACCTATAAGACTCCTATAAGGATGTCCCTTTATAGGATGGTTTATGAGAAAGTTTGCCACCTACTTGTGGAGATCCAACATCGAGCATATTGAGCAGTTAAGCAGTGTAATTGGGATCTCGAGGTGGTGGACGAGGCCAAATTGCTCCAGATTAAAGAGTTGGAGGAGTTGCTGTAAGCCCTGAATTCTTATTATCCTCTTAATTACTATGGTTAAATGAAACGGCCAAAAGTTAGGGACTAAGACTAATAAATAACCTATGGTAAACTAGGAGTTGAGTCTTGGAAGAATAAATTAGAAGTTGAGAACTTGGTATGTGGTGTCAATTGAATCAACATTAAGGAATTTGTTTTATTTAACCTAAGGTTTAATTAAATTTTGATTTCAATTAGGAATCTGTTTAATTAGTTAGATGACAATGTAATCAAACTCTAG

mRNA sequence

GGAACACGCTTTTTCGACCGCGGTGGTATGTTTGTCGGGCCCTCTCCTTGTTCCGTGAAGAAATTAACAAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCATCGGTTGTTCAAGACCTTTCGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTATTAGATGACAATGTAATCAAACTCTAG

Coding sequence (CDS)

GGAACACGCTTTTTCGACCGCGGTGGTATGTTTGTCGGGCCCTCTCCTTGTTCCGTGAAGAAATTAACAAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCATCGGTTGTTCAAGACCTTTCGTCTCTACCCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTATTAGATGACAATGTAATCAAACTCTAG

Protein sequence

GTRFFDRGGMFVGPSPCSVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLLDDNVIKL
Homology
[Close]
BLAST of Lsi03G008810 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLT LLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1942 SMKKLTILLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1989

[Close]
BLAST of Lsi03G008810 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLT LLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1961 SMKKLTILLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2008

[Close]
BLAST of Lsi03G008810 vs. ExPASy Swiss-Prot
Match: A8W3G3 (Protein Ycf2 OS=Cuscuta exaltata OX=476139 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-15
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLT LLYLLSC+AG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1901 SMKKLTILLYLLSCTAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1948

[Close]
BLAST of Lsi03G008810 vs. ExPASy Swiss-Prot
Match: P32033 (Protein Ycf2 OS=Cuscuta reflexa OX=4129 GN=ycf2 PE=3 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-15
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLT LLYLLSC+AG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1666 SMKKLTILLYLLSCTAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1713

[Close]
BLAST of Lsi03G008810 vs. ExPASy Swiss-Prot
Match: Q0G9Q1 (Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.7e-15
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLT LLYLLSCSAG SV QDL SLPGPDE+NGITSYGLVENDSDL+
Sbjct: 1738 SMKKLTILLYLLSCSAG-SVAQDLWSLPGPDERNGITSYGLVENDSDLV 1785

[Close]
BLAST of Lsi03G008810 vs. ExPASy TrEMBL
Match: A0A649UJW6 (Protein Ycf2 OS=Ilex asprella OX=185493 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. ExPASy TrEMBL
Match: A0A1B1NHJ5 (Protein Ycf2 OS=Ilex szechwanensis OX=1872703 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. ExPASy TrEMBL
Match: A0A7U0KMH9 (Ycf2 OS=Ilex triflora OX=185557 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. ExPASy TrEMBL
Match: A0A7U0KQP2 (Ycf2 OS=Ilex chapaensis OX=1009480 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. ExPASy TrEMBL
Match: A0A7T7A9M9 (Ycf2 OS=Ilex purpurea OX=185544 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. NCBI nr
Match: YP_010138913.1 (Ycf2 [Ilex vomitoria] >YP_010138934.1 Ycf2 [Ilex vomitoria] >QQJ94521.1 Ycf2 [Ilex vomitoria] >QQJ94542.1 Ycf2 [Ilex vomitoria])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. NCBI nr
Match: AJW59550.1 (Ycf2 [Ilex dumosa] >AJW59589.1 Ycf2 [Ilex dumosa])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1958 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 2005

[Close]
BLAST of Lsi03G008810 vs. NCBI nr
Match: AMK95960.1 (hypothetical chloroplast RF21 [Saltugilia latimeri])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1931 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1978

[Close]
BLAST of Lsi03G008810 vs. NCBI nr
Match: QHE50375.1 (hypothetical protein RF2 [Pittosporopsis kerrii] >QHE50392.1 hypothetical chloroplast RF2 [Pittosporopsis kerrii])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1944 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1991

[Close]
BLAST of Lsi03G008810 vs. NCBI nr
Match: ALI91624.1 (Ycf2, partial [Oecopetalum mexicanum])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KKLTRLLYLLSCSAG SV QDL SLPGPDEKNGITSYGLVENDSDL+
Sbjct: 1952 SMKKLTRLLYLLSCSAG-SVAQDLWSLPGPDEKNGITSYGLVENDSDLV 1999

[Close]
BLAST of Lsi03G008810 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KK T LLYLLSCSAG SV QDL SLP PDEKN ITSYG VENDSDL+
Sbjct: 1955 SMKKFTILLYLLSCSAG-SVAQDLWSLPVPDEKNRITSYGFVENDSDLV 2002

[Close]
BLAST of Lsi03G008810 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 18   SVKKLTRLLYLLSCSAGSSVVQDLSSLPGPDEKNGITSYGLVENDSDLL 67
            S+KK T LLYLLSCSAG SV QDL SLP PDEKN ITSYG VENDSDL+
Sbjct: 1955 SMKKFTILLYLLSCSAG-SVAQDLWSLPVPDEKNRITSYGFVENDSDLV 2002

The following BLAST results are available for this feature:
BLAST of Lsi03G008810 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0A3793.0e-1587.76Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1[more]
Q0ZIV63.0e-1587.76Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1[more]
A8W3G36.7e-1585.71Protein Ycf2 OS=Cuscuta exaltata OX=476139 GN=ycf2 PE=3 SV=1[more]
P320336.7e-1585.71Protein Ycf2 OS=Cuscuta reflexa OX=4129 GN=ycf2 PE=3 SV=2[more]
Q0G9Q16.7e-1585.71Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1[more]
BLAST of Lsi03G008810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A649UJW61.3e-1389.80Protein Ycf2 OS=Ilex asprella OX=185493 GN=ycf2 PE=3 SV=1[more]
A0A1B1NHJ51.3e-1389.80Protein Ycf2 OS=Ilex szechwanensis OX=1872703 GN=ycf2 PE=3 SV=1[more]
A0A7U0KMH91.3e-1389.80Ycf2 OS=Ilex triflora OX=185557 GN=ycf2 PE=4 SV=1[more]
A0A7U0KQP21.3e-1389.80Ycf2 OS=Ilex chapaensis OX=1009480 GN=ycf2 PE=4 SV=1[more]
A0A7T7A9M91.3e-1389.80Ycf2 OS=Ilex purpurea OX=185544 GN=ycf2 PE=4 SV=1[more]
BLAST of Lsi03G008810 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_010138913.12.7e-1389.80Ycf2 [Ilex vomitoria] >YP_010138934.1 Ycf2 [Ilex vomitoria] >QQJ94521.1 Ycf2 [Il... [more]
AJW59550.12.7e-1389.80Ycf2 [Ilex dumosa] >AJW59589.1 Ycf2 [Ilex dumosa][more]
AMK95960.12.7e-1389.80hypothetical chloroplast RF21 [Saltugilia latimeri][more]
QHE50375.12.7e-1389.80hypothetical protein RF2 [Pittosporopsis kerrii] >QHE50392.1 hypothetical chloro... [more]
ALI91624.12.7e-1389.80Ycf2, partial [Oecopetalum mexicanum][more]
BLAST of Lsi03G008810 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00860.11.7e-1379.59Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.11.7e-1379.59Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 18..65
NoneNo IPR availablePANTHERPTHR33078:SF55PROTEIN YCF2coord: 18..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008810.1Lsi03G008810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity