Lsi03G008780 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G008780
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCOP9 signalosome complex subunit 8-like
Locationchr03: 15166224 .. 15167644 (+)
RNA-Seq ExpressionLsi03G008780
SyntenyLsi03G008780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCAAATGATGTACGTATGATATGTTTGAGAAAGGAGTGAAGGCAGAGGTAGAGCACATTTAGCAGCAGCACGGGAAGAGGAGAAGACGAGCAAAGAGAGCAATCATGGATTTTGCTCGTCTCACTGAGGCCTTAGCTTCAAAGTCGTACGAAAAGATCGCTGATATCTGTGACGACCTCATGCTTCAGGCATCTAATTTTCTCTGTTTTTATTACCTTCAGCTTCAATTTTTTTTCCTTTTCCATAACTCTTCCCAACCCTAACTTGATTTATTCTCTGGGATTTGTTCAATTTTACATTTCTTCAACAGGCTGCAGCCGAGGGCATTGCTTTTCAGGATGAATGGCCTTACGCGATCCATTTTCTTGGCTACCTTTACGTTGATGACATGTAAGATCATTTTCCTTGATGCCCTATTTATTTCACGAAAATCATGAAGAAATTTTTAGGTGGATTGATTGTGGTACTGGACTTTTATGGCGGATTGTTTTGTGGTTACTGTCTTCTGATCTGGGTTTTAAGCGCCATTGTACTTTTTGGGTCATTTCTGTGGGTTGGTTTCACTCTCCTAAATGAGCTCTTTGTAACTACATTTCAAAATTTCTGTTTCCTTGTAAAGAAAACATAAAACATATATAGGCACCAGACTAGGAGGAGAGTGTGTTAGGTAATGTTTTCATTGATTATTGGCTCATATGAAAGTTTTTAATGGTCATTAGTTTTCCTTGGAAGTGATTTTTTAGGAAATATAAATTATTTCTTGGCTCAGAATTTTTGGTCTATTTAAAAAAGAAAGAATTATATATGGTTAAAATTGTCCTGCTGATGTTCCTAAGAAATATACTTTAGTTCTTAACTTCCTGGTAGGGCTCTATAGTGTTGCTTGTTATTTGTTTCAAAATACATTGGTTCTCATTTGGTCATCAGCTCTCTTCTATAATACTTTAATTTCTCTCTACATCTATCTAATTTTGGGTTGGCAAAGTCCATATGTAAATTATTTATAGATATAAGATATTATCTAGGACTCACTGTTCAATTTCTGTTTTGGATTTGTTTCGTTCTTTCCTTTTTCCCTCATTTCTTCTTCTATTCAAATTTTTGTTAAATGTTTTCATATTTTGGTAATTCGTATGATAACTCTTGGTTGAAGTTGAGTTTCCTTATCTAGATTTGTGGACTATCAGCTGACTGTTAACTATTTAGCGGTTTCTTGCAGCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATTAAAGAAAACCGGCCAGAACTGGTTGCCGTTTGGAAAATTGGCCAAAAGTTATGGATTCGGGACCATGGGGGTGTATATGAGGCTATTCATGAATTTGATTGGTGTCAAGAAGTTCAAGGCCTATTAGCTGCATTTTCAGGCAAGTCTCTTTGA

mRNA sequence

ATGTTATCAAATGATGCTGCAGCCGAGGGCATTGCTTTTCAGGATGAATGGCCTTACGCGATCCATTTTCTTGGCTACCTTTACGTTGATGACATCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATTAAAGAAAACCGGCCAGAACTGGTTGCCGTTTGGAAAATTGGCCAAAAGTTATGGATTCGGGACCATGGGGGTGTATATGAGGCTATTCATGAATTTGATTGGTGTCAAGAAGTTCAAGGCCTATTAGCTGCATTTTCAGGCAAGTCTCTTTGA

Coding sequence (CDS)

ATGTTATCAAATGATGCTGCAGCCGAGGGCATTGCTTTTCAGGATGAATGGCCTTACGCGATCCATTTTCTTGGCTACCTTTACGTTGATGACATCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTATTAAAGAAAACCGGCCAGAACTGGTTGCCGTTTGGAAAATTGGCCAAAAGTTATGGATTCGGGACCATGGGGGTGTATATGAGGCTATTCATGAATTTGATTGGTGTCAAGAAGTTCAAGGCCTATTAGCTGCATTTTCAGGCAAGTCTCTTTGA

Protein sequence

MLSNDAAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIHEFDWCQEVQGLLAAFSGKSL
Homology
[Close]
BLAST of Lsi03G008780 vs. ExPASy Swiss-Prot
Match: P43255 (COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=CSN8 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.1e-31
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 7   AAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIR 66
           A+EGI + D+WPYAIH LGY YVDD +SARFLWK IP+ IKE +PE+VA W IGQKLW  
Sbjct: 30  ASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTH 89

Query: 67  DHGGVYEAIHEFDWCQEVQGLLAAFS 93
           D+ GVYEAI  +DW QE + ++AAFS
Sbjct: 90  DYAGVYEAIRGYDWSQEAKDMVAAFS 115

[Close]
BLAST of Lsi03G008780 vs. ExPASy Swiss-Prot
Match: Q6GQA6 (COP9 signalosome complex subunit 8 OS=Xenopus laevis OX=8355 GN=csn8 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 5.7e-14
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 26  YLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIHEFDWCQEVQ 85
           YL  +D+N+AR+LWK IPS IK +  EL  +W++GQK+W RD  G+Y +I  + W + +Q
Sbjct: 46  YLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQWSENIQ 105

Query: 86  GLLAA 91
            ++ A
Sbjct: 106 QIMEA 110

[Close]
BLAST of Lsi03G008780 vs. ExPASy Swiss-Prot
Match: Q7ZUZ0 (COP9 signalosome complex subunit 8 OS=Danio rerio OX=7955 GN=cops8 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-13
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 26  YLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIHEFDWCQEVQ 85
           YL  +D+N+AR+LWK IP  IK   PE+ A+W +GQ++W RD  G+Y AI  + W + + 
Sbjct: 42  YLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSESIL 101

Query: 86  GLLAA 91
            ++ A
Sbjct: 102 PVMEA 106

[Close]
BLAST of Lsi03G008780 vs. ExPASy Swiss-Prot
Match: Q8VBV7 (COP9 signalosome complex subunit 8 OS=Mus musculus OX=10090 GN=Cops8 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-12
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 26  YLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIHEFDWCQEVQ 85
           YL  +D+N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   W + VQ
Sbjct: 44  YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQ 103

Query: 86  GLLAA 91
            ++ A
Sbjct: 104 PIMEA 108

[Close]
BLAST of Lsi03G008780 vs. ExPASy Swiss-Prot
Match: Q6P4Z9 (COP9 signalosome complex subunit 8 OS=Rattus norvegicus OX=10116 GN=Cops8 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-12
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 26  YLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIHEFDWCQEVQ 85
           YL  +D+N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   W + VQ
Sbjct: 44  YLLQNDMNNARYLWKRIPPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQ 103

Query: 86  GLLAA 91
            ++ A
Sbjct: 104 PIMEA 108

[Close]
BLAST of Lsi03G008780 vs. ExPASy TrEMBL
Match: A0A0A0KJG9 (CSN8_PSD8_EIF3K domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G411200 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA++DEWPYAIHFLGY YVDDINSARFLWK+IPSTIKENRPELVA+WKIGQKLW+
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKSIPSTIKENRPELVAIWKIGQKLWV 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFSGKSL 97
           RDH GVYEAIHE DWCQEVQGLLAAFSGKSL
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFSGKSL 119

[Close]
BLAST of Lsi03G008780 vs. ExPASy TrEMBL
Match: A0A1S3BMY1 (COP9 signalosome complex subunit 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491316 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA++DEWPYAIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW 
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWT 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDH GVYEAIHE DWCQEVQGLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. ExPASy TrEMBL
Match: A0A1S3BMN0 (COP9 signalosome complex subunit 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491316 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA++DEWPYAIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW 
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWT 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDH GVYEAIHE DWCQEVQGLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. ExPASy TrEMBL
Match: A0A6J1JQ49 (COP9 signalosome complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111486724 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.7e-42
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA+QDEWPY IHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 29  AAAEGIAYQDEWPYTIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RD+GGVYEAI  FDWCQEV+GLLAAFS
Sbjct: 89  RDYGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. ExPASy TrEMBL
Match: A0A6J1EJA8 (COP9 signalosome complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111434662 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGI++QDEWPY IHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 29  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDHGGVYEAI  FDW QEV+GLLAAFS
Sbjct: 89  RDHGGVYEAIDGFDWSQEVRGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. NCBI nr
Match: XP_038888574.1 (COP9 signalosome complex subunit 8 [Benincasa hispida])

HSP 1 Score: 184.1 bits (466), Expect = 5.6e-43
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA+QDEWPYAIHFLGYLYVDDINSARFLWK+IPSTIKENRPEL AVWKIGQKLWI
Sbjct: 29  AAAEGIAYQDEWPYAIHFLGYLYVDDINSARFLWKSIPSTIKENRPELAAVWKIGQKLWI 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDHGGVYEAI EFDWCQEVQGLLAAFS
Sbjct: 89  RDHGGVYEAILEFDWCQEVQGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. NCBI nr
Match: KAG7022587.1 (COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGI++QDEWPY IHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 34  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 93

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFSGKSL 97
           RDHGGVYEAI  FDW QEV+GLLAAFSGKSL
Sbjct: 94  RDHGGVYEAIDGFDWSQEVRGLLAAFSGKSL 124

[Close]
BLAST of Lsi03G008780 vs. NCBI nr
Match: XP_023531250.1 (COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA+QDEWPY IHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI
Sbjct: 29  AAAEGIAYQDEWPYTIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDHGGVYEAI  FDWCQEV+GLLAAFS
Sbjct: 89  RDHGGVYEAIDGFDWCQEVRGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. NCBI nr
Match: XP_031743776.1 (COP9 signalosome complex subunit 8 isoform X2 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-42
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA++DEWPYAIHFLGY YVDDINSARFLWK+IPSTIKENRPELVA+WKIGQKLW+
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKSIPSTIKENRPELVAIWKIGQKLWV 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDH GVYEAIHE DWCQEVQGLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. NCBI nr
Match: XP_008449425.1 (PREDICTED: COP9 signalosome complex subunit 8 isoform X1 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-42
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 6   AAAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWI 65
           AAAEGIA++DEWPYAIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW 
Sbjct: 29  AAAEGIAYKDEWPYAIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWT 88

Query: 66  RDHGGVYEAIHEFDWCQEVQGLLAAFS 93
           RDH GVYEAIHE DWCQEVQGLLAAFS
Sbjct: 89  RDHRGVYEAIHELDWCQEVQGLLAAFS 115

[Close]
BLAST of Lsi03G008780 vs. TAIR 10
Match: AT4G14110.1 (COP9 signalosome, subunit CSN8 )

HSP 1 Score: 134.8 bits (338), Expect = 3.7e-32
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 0 

Query: 7   AAEGIAFQDEWPYAIHFLGYLYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIR 66
           A+EGI + D+WPYAIH LGY YVDD +SARFLWK IP+ IKE +PE+VA W IGQKLW  
Sbjct: 30  ASEGIEYHDDWPYAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTH 89

Query: 67  DHGGVYEAIHEFDWCQEVQGLLAAFS 93
           D+ GVYEAI  +DW QE + ++AAFS
Sbjct: 90  DYAGVYEAIRGYDWSQEAKDMVAAFS 115

The following BLAST results are available for this feature:
BLAST of Lsi03G008780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P432555.1e-3165.12COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana OX=3702 GN=CSN8 PE=1 ... [more]
Q6GQA65.7e-1444.62COP9 signalosome complex subunit 8 OS=Xenopus laevis OX=8355 GN=csn8 PE=2 SV=2[more]
Q7ZUZ02.8e-1343.08COP9 signalosome complex subunit 8 OS=Danio rerio OX=7955 GN=cops8 PE=2 SV=1[more]
Q8VBV73.1e-1243.08COP9 signalosome complex subunit 8 OS=Mus musculus OX=10090 GN=Cops8 PE=1 SV=1[more]
Q6P4Z93.1e-1243.08COP9 signalosome complex subunit 8 OS=Rattus norvegicus OX=10116 GN=Cops8 PE=2 S... [more]
BLAST of Lsi03G008780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJG91.4e-4491.21CSN8_PSD8_EIF3K domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G41... [more]
A0A1S3BMY13.0e-4293.10COP9 signalosome complex subunit 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A1S3BMN03.0e-4293.10COP9 signalosome complex subunit 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1JQ496.7e-4293.10COP9 signalosome complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111486... [more]
A0A6J1EJA81.3e-4090.80COP9 signalosome complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
BLAST of Lsi03G008780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888574.15.6e-4395.40COP9 signalosome complex subunit 8 [Benincasa hispida][more]
KAG7022587.11.3e-4291.21COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_023531250.12.8e-4294.25COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo][more]
XP_031743776.16.2e-4290.80COP9 signalosome complex subunit 8 isoform X2 [Cucumis sativus][more]
XP_008449425.16.2e-4293.10PREDICTED: COP9 signalosome complex subunit 8 isoform X1 [Cucumis melo][more]
BLAST of Lsi03G008780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14110.13.7e-3265.12COP9 signalosome, subunit CSN8 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033464CSN8/PSMD8/EIF3KPFAMPF10075CSN8_PSD8_EIF3Kcoord: 16..91
e-value: 4.9E-13
score: 49.3
NoneNo IPR availablePANTHERPTHR13339:SF1BNAA08G07630D PROTEINcoord: 5..92
IPR033205COP9 signalosome, subunit CSN8PANTHERPTHR13339COP9 SIGNALOSOME COMPLEX SUBUNIT 8coord: 5..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G008780.1Lsi03G008780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010387 COP9 signalosome assembly
biological_process GO:0000338 protein deneddylation
biological_process GO:0009753 response to jasmonic acid
biological_process GO:0009416 response to light stimulus
cellular_component GO:0008180 COP9 signalosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane