Lsi03G008770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G008770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 15129240 .. 15131115 (+)
RNA-Seq Expression	Lsi03G008770
Synteny	Lsi03G008770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATGTAAAATCAGGATCTAAATTCTACGCAATGATAAGACTTGCTTACAAACTAGTTTAGCCTTTTTTGGATTTGAAAAATTAAAATGATTTGCTAGTGTTTGTACCTTTTTTGGGTAGATTTAAGATGCAATAAATAGACTTTTTGCATAATGGCTTAAATGTATGAGCAAAGCTTTTTAAGATATAGCTCTATTCAATTCTCTTGCAGTTTCCTTTTTTTCTTTTTTTGTTTATGCATTTTGTCAAATAAATTTTGGTTCATTAGTCTTTTCTCTTTGTTTTACTAAGCTTAACTTGCTTGGTTGATAAGTTTCTTTATGGTTTCCAATAAGTTCTTTTGTGTTTATAAGCATATTTGTTTATGTTCATGCCTTAAATGAAAATGGTTGATAGGCTTGTTTGGATTTATAAGTAAGTTTCATTGAGTTGTTTATAGTGTCTATTGAGTTTATCTTAGTTCATGAGTTTCAATATCTTGTTGATTTTATTTTTTTTTAATAAGTTGAATTTTTGTTTAATTGTTGTAAGTTTTTTTTTGTTTTTGTTTTTTGTTTATGTCTATGCATTTTCCAAGTGAATTTAGTTCTATTAATCTTTTTTCTTAGTTTTGATAGGCTTACTTGCTTAGGTTGATAACTTTGTTTATAGTTTCCATTGAGTTGTATATGTCTATATGTTTATAATTTTTTTGGGGGGAGTTTATGTTTAGACATTTTGCTAAATGAATTTGGGTTCTATTAGTCTTTTCTCTTAATTTTGATGTGCTTACGTGCATGGATTGATAAGTTTATTTATGATTTCCATTGAGTTGTTTGTGTTTACAAGTTTATAAGTATTTTGTTTATGTTTATGCATTTTCTAAAGTAGTTTGATAGGCTTACTTGCTTGGATTATAAGTAATTTTCTTTTATGTTGTTAATGGTTTCTATTGAGTTCGTTTTACTTACATATTTCATTTTTTTTTTCCAGATTTTATGTCGTTGGTTTGAGTAAAAATTGCCCCATAGACTAGTTATTGATATTGGGATCTCATTTTCATGAATGTCCATTGATTTTGATATGTAATGTGATGTATTGGAAATTTTACCATTCCTTCATGAATGTCCGTTTAGTTGTTTATAAGTTTTATAGTTTATGTTTATGCATTTTATCCAATGAAGTCGGTTTCTATTAGTCTTCTTTTGTTACCTTATTGGGTTTATTTCTTTTGATAAGTTGAATTGGTTGTGTTTAGTTGTTTATAAGATTTTTGAATTAAAGTTTGGCCTCTAAAACCTTATTCATTTTGTTTAAGAAAAATATTGCAATTGTTTTAGGACCATAGTAAGTAAGTGGAGTTTGAACTACCATGCCTTCTTTATAAGGTAATATTTTAAGTTCATGAGTTTTATTATCTTGTTGAGTTTATAATTTCTTTTGATAAGTTTAGTTATTTTCTTCAGTGAAGAAAACATTTGCTCCTTAATCTAAGGAAAAGAAAGATGGGGTTCTTATGGGTTGGGTTTTAATATCTATAAGTTTTTGTTTTCTCTGTGGTTTGAACTGAGAGCTTGCTATTGATTTTCATTGCTAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGAGGCATTTGCAGAGTTCTGGTGTATCTATTCTACCAATTGAAGAGGTGAAACTAGAGAATGATCAGAGCAAACATGCTTACTTTGTCGCCATTCCCACTGCAGTCGCTGCGAGGTTGTTCAGCTCACTACCATCCCTCGATGAGTGATCACTTTCACTTTTTTGCAAAAATTGCTAACACTAATTAAAAGCTATAACTGTTTAGAGACTCTTTACTACTTTTTAAAATAGCTATTTGTTTG

mRNA sequence

ATGTTTATAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGAGGCATTTGCAGAGTTCTGGTGTATCTATTCTACCAATTGAAGAGGTGAAACTAGAGAATGATCAGAGCAAACATGCTTACTTTGTCGCCATTCCCACTGCAGTCGCTGCGAGGTTGTTCAGCTCACTACCATCCCTCGATGAGTGATCACTTTCACTTTTTTGCAAAAATTGCTAACACTAATTAAAAGCTATAACTGTTTAGAGACTCTTTACTACTTTTTAAAATAGCTATTTGTTTG

Coding sequence (CDS)

ATGTTTATAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGAGGCATTTGCAGAGTTCTGGTGTATCTATTCTACCAATTGAAGAGGTGAAACTAGAGAATGATCAGAGCAAACATGCTTACTTTGTCGCCATTCCCACTGCAGTCGCTGCGAGGTTGTTCAGCTCACTACCATCCCTCGATGAGTGA

Protein sequence

MFIKPTNQRKDGLGSQRNWRQRHLQSSGVSILPIEEVKLENDQSKHAYFVAIPTAVAARLFSSLPSLDE

Homology

The following BLAST results are available for this feature:

BLAST of Lsi03G008770 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G008770 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G008770 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G008770 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G008770.1	Lsi03G008770.1	mRNA