Lsi03G008200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G008200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear transcription factor Y subunit C
Location	chr03: 12431968 .. 12432768 (-)
RNA-Seq Expression	Lsi03G008200
Synteny	Lsi03G008200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGTGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTTCGATGGTGGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCCCACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAACAACAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTCATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGAATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGGCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATGCTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG

mRNA sequence

ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGTGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTTCGATGGTGGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCCCACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAACAACAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTCATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGAATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGGCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATGCTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG

Coding sequence (CDS)

ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGTGGTGTCGGTGCAGGCCAATTACCATATTCTAATCCTTACCAAACAGCTTCGATGGTGGCTTCCGGGACTCCTGCTATTACGATTCCCCCAACTCAGCCACCGTCCAGTTTCTCTAATTCTCCCCACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAACAACAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTCCCCCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCCGTCATATTCGCAAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTCTTGGTTGATATCATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACAAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGAATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGGCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATGCTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG

Protein sequence

MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPFMPWPHAQPQQQQQTQQQSDA

Homology

[Close]

BLAST of Lsi03G008200 vs. ExPASy Swiss-Prot
Match: Q8LCG7 (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 6.5e-68
Identity = 150/214 (70.09%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           M+QSE  Q QQQ          G + Y                  +PP    S   N+  
Sbjct: 1   MEQSEEGQQQQQQ---------GVMDY------------------VPPHAYQSGPVNAAS 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
            +A+QQA HFHH  QQQQQQQLQMFWANQMQEIE TTDFKNH+LPLARIKKIMKADEDVR
Sbjct: 61  HMAFQQAHHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIP-VVGSPADLPYYYVPSQ 214
           RDELKEEGLG+TKG+IP VVGSP   PYYY+  Q
Sbjct: 181 RDELKEEGLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]

BLAST of Lsi03G008200 vs. ExPASy Swiss-Prot
Match: Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.6e-64
Identity = 157/260 (60.38%), Postives = 182/260 (70.00%), Query Frame = 0


Query: 15  QPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSP------HQLAYQQAQ 74
           QPA GV AG       Y+ A+ V +  PA+    +QP  SF  +P      HQL YQQAQ
Sbjct: 8   QPAIGVVAGGSQVYPAYRPAATVPT-APAVIPAGSQPAPSFPANPDQLSAQHQLVYQQAQ 67

Query: 75  HFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 134
            FH Q QQQQQ+QLQ FWA ++ +IEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV
Sbjct: 68  QFHQQLQQQQQRQLQQFWAERLVDIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 127

Query: 135 IFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEG 194
           IFAKACE+FILELTLRSW+HTEENKRRTLQKNDIAAAI+RTD++DFLVDI+PRD+LKEEG
Sbjct: 128 IFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVDIVPRDDLKEEG 187

Query: 195 LGITKGSIPVVGSPAD-LPY-YYVPSQHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPF 254
           +G+ +  +P +G PAD  PY YYVP Q   GA              YGG  QQ  P    
Sbjct: 188 VGLPRAGLPPLGVPADSYPYGYYVPQQQVPGA-----------GIAYGG--QQGHPG--- 247

Query: 255 MPWPHAQPQQQQ-QTQQQSD 266
             W   Q QQ++   +QQSD
Sbjct: 248 YLWQDPQEQQEEPPAEQQSD 250

[Close]

BLAST of Lsi03G008200 vs. ExPASy Swiss-Prot
Match: Q8L4B2 (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.9e-57
Identity = 146/259 (56.37%), Postives = 173/259 (66.80%), Query Frame = 0


Query: 11  QQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHF 70
           QQ    +G +  G    +NPYQT  M    T A T+      +  +  P QLA+ Q    
Sbjct: 3   QQDHGQSGAMNYG----TNPYQTNPM---STTAATV------AGGAAQPGQLAFHQI--- 62

Query: 71  HHQQQQQQQ--QQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 130
            HQQQQQQQ  QQLQ FW NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV
Sbjct: 63  -HQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 122

Query: 131 IFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEG 190
           +FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E 
Sbjct: 123 VFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 182

Query: 191 LG-ITKGSIPVVGSPADLPYYYVPS-QHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPF 250
           LG I +G++P   + A  PY Y+P+   P+G  GM+MG          G A  P P M  
Sbjct: 183 LGSIPRGTVPEAAA-AGYPYGYLPAGTAPIGNPGMVMGNP--------GGAYPPNPYM-- 228

Query: 251 MPWPHAQPQQQQQTQQQSD 266
                 QP  QQQ   Q D
Sbjct: 243 -----GQPMWQQQAPDQPD 228

[Close]

BLAST of Lsi03G008200 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-54
Identity = 114/183 (62.30%), Postives = 137/183 (74.86%), Query Frame = 0


Query: 43  AITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNH 102
           A  IPP  P ++ S +    +Y       H   QQQQQQLQ+FW  Q QEIEQ  DFKNH
Sbjct: 12  AAGIPPPPPGTTISAAGGGASY-------HHLLQQQQQQLQLFWTYQRQEIEQVNDFKNH 71

Query: 103 SLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDI 162
            LPLARIKKIMKADEDVRMISAEAP++FAKACE+FILELT+RSW+H EENKRRTLQKNDI
Sbjct: 72  QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 131

Query: 163 AAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMI 222
           AAAI+RTD+FDFLVDI+PRDE+K+E   +  G + V  + + +PYYY P   P G  GM+
Sbjct: 132 AAAITRTDIFDFLVDIVPRDEIKDEA-AVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMM 186

Query: 223 MGK 226
           +G+
Sbjct: 192 IGR 186

[Close]

BLAST of Lsi03G008200 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 9.2e-54
Identity = 136/248 (54.84%), Postives = 156/248 (62.90%), Query Frame = 0


Query: 11  QQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHF 70
           QQ Q  A   G      SNPYQT +M            T P  S   + HQ+        
Sbjct: 3   QQGQSSAMNYG------SNPYQTNAMT-----------TTPTGSDHPAYHQI-------- 62

Query: 71  HHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIF 130
           H QQQQQ  QQLQ FW  Q +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV+F
Sbjct: 63  HQQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVF 122

Query: 131 AKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLG 190
           A+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E LG
Sbjct: 123 ARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLG 182

Query: 191 ITKGSIPVVGSPADLPYYYV-PSQHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPFMPW 250
              G      + A  PY Y+ P   P+G  GM+MG            A  P P M    W
Sbjct: 183 ---GVGAEAATAAGYPYGYLPPGTAPIGNPGMVMGNP---------GAYPPNPYMGQPMW 213

Query: 251 PHAQPQQQ 258
               P+QQ
Sbjct: 243 QQPGPEQQ 213

[Close]

BLAST of Lsi03G008200 vs. ExPASy TrEMBL
Match: A0A1S3C190 (nuclear transcription factor Y subunit C-2 OS=Cucumis melo OX=3656 GN=LOC103495470 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.1e-137
Identity = 259/265 (97.74%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGVGAGQL YSNPYQTA MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK S+PVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSD 266
           RPSMPFMPWPH QPQQQQQTQQQSD
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 265

[Close]

BLAST of Lsi03G008200 vs. ExPASy TrEMBL
Match: A0A5A7SLP2 (Nuclear transcription factor Y subunit C-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002960 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.1e-137
Identity = 259/265 (97.74%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGVGAGQL YSNPYQTA MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK S+PVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSD 266
           RPSMPFMPWPH QPQQQQQTQQQSD
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 265

[Close]

BLAST of Lsi03G008200 vs. ExPASy TrEMBL
Match: A0A0A0K5U1 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G051420 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.1e-137
Identity = 259/265 (97.74%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGVGAGQL YSNPYQTA MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK S+PVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSD 266
           RPSMPFMPWPH QPQQQQQTQQQSD
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 265

[Close]

BLAST of Lsi03G008200 vs. ExPASy TrEMBL
Match: A0A6J1DV19 (nuclear transcription factor Y subunit C-2 OS=Momordica charantia OX=3673 GN=LOC111024312 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.6e-136
Identity = 257/266 (96.62%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGVGAGQLPYSNPY+T  MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYETNLMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK SIPVVGSPADLPYYYVP QHPV A GMIMGKQLDQANMYGGTAQQP
Sbjct: 181 RDELKEEGLGITKASIPVVGSPADLPYYYVPPQHPVAAPGMIMGKQLDQANMYGGTAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSDA 267
           RP MPFMPWPH QPQQQQQTQQQSDA
Sbjct: 241 RPPMPFMPWPHTQPQQQQQTQQQSDA 266

[Close]

BLAST of Lsi03G008200 vs. ExPASy TrEMBL
Match: A0A6J1JII4 (nuclear transcription factor Y subunit C-2-like OS=Cucurbita maxima OX=3661 GN=LOC111486109 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.6e-131
Identity = 253/269 (94.05%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQ AGGVGAGQLPYSNPYQTA M ASGTPAITIPPTQ PSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLA+QQAQHFH QQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAFQQAQHFHQQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK SIPVVGSPADLPYYYVPSQHPV ATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHA---QPQQQQQTQQQSDA 267
           RP +PFMPWPH    Q QQQQQTQQQSDA
Sbjct: 241 RPPIPFMPWPHTQAQQQQQQQQTQQQSDA 269

[Close]

BLAST of Lsi03G008200 vs. NCBI nr
Match: XP_038888434.1 (nuclear transcription factor Y subunit C-2-like [Benincasa hispida] >XP_038888435.1 nuclear transcription factor Y subunit C-2-like [Benincasa hispida] >XP_038888436.1 nuclear transcription factor Y subunit C-2-like [Benincasa hispida] >XP_038888437.1 nuclear transcription factor Y subunit C-2-like [Benincasa hispida])

HSP 1 Score: 501.1 bits (1289), Expect = 5.8e-138
Identity = 260/266 (97.74%), Postives = 260/266 (97.74%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQH QQSQQPAG VGAGQLPYSNPYQTA MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHHQQSQQPAGSVGAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK SIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQ NMYGGTAQQP
Sbjct: 181 RDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQVNMYGGTAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSDA 267
           RPSMPFMPWPH QPQQQQQTQQQSDA
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSDA 266

[Close]

BLAST of Lsi03G008200 vs. NCBI nr
Match: XP_004136852.1 (nuclear transcription factor Y subunit C-2 [Cucumis sativus] >XP_008455266.1 PREDICTED: nuclear transcription factor Y subunit C-2 [Cucumis melo] >XP_008455267.1 PREDICTED: nuclear transcription factor Y subunit C-2 [Cucumis melo] >XP_011658757.1 nuclear transcription factor Y subunit C-2 [Cucumis sativus] >XP_016901763.1 PREDICTED: nuclear transcription factor Y subunit C-2 [Cucumis melo] >XP_031744926.1 nuclear transcription factor Y subunit C-2 [Cucumis sativus] >KAA0031528.1 nuclear transcription factor Y subunit C-2 [Cucumis melo var. makuwa] >KGN43662.1 hypothetical protein Csa_017325 [Cucumis sativus] >TYK06981.1 nuclear transcription factor Y subunit C-2 [Cucumis melo var. makuwa])

HSP 1 Score: 499.2 bits (1284), Expect = 2.2e-137
Identity = 259/265 (97.74%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGVGAGQL YSNPYQTA MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK S+PVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSD 266
           RPSMPFMPWPH QPQQQQQTQQQSD
Sbjct: 241 RPSMPFMPWPHTQPQQQQQTQQQSD 265

[Close]

BLAST of Lsi03G008200 vs. NCBI nr
Match: XP_022157652.1 (nuclear transcription factor Y subunit C-2 [Momordica charantia] >XP_022157653.1 nuclear transcription factor Y subunit C-2 [Momordica charantia] >XP_022157654.1 nuclear transcription factor Y subunit C-2 [Momordica charantia] >XP_022157655.1 nuclear transcription factor Y subunit C-2 [Momordica charantia])

HSP 1 Score: 494.6 bits (1272), Expect = 5.4e-136
Identity = 257/266 (96.62%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQPAGGVGAGQLPYSNPY+T  MVASGTPAITIPPTQPPSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYETNLMVASGTPAITIPPTQPPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK SIPVVGSPADLPYYYVP QHPV A GMIMGKQLDQANMYGGTAQQP
Sbjct: 181 RDELKEEGLGITKASIPVVGSPADLPYYYVPPQHPVAAPGMIMGKQLDQANMYGGTAQQP 240

Query: 241 RPSMPFMPWPHAQPQQQQQTQQQSDA 267
           RP MPFMPWPH QPQQQQQTQQQSDA
Sbjct: 241 RPPMPFMPWPHTQPQQQQQTQQQSDA 266

[Close]

BLAST of Lsi03G008200 vs. NCBI nr
Match: XP_022988890.1 (nuclear transcription factor Y subunit C-2-like [Cucurbita maxima] >XP_022988891.1 nuclear transcription factor Y subunit C-2-like [Cucurbita maxima])

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-130
Identity = 253/269 (94.05%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQ AGGVGAGQLPYSNPYQTA M ASGTPAITIPPTQ PSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLA+QQAQHFH QQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAFQQAQHFHQQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK SIPVVGSPADLPYYYVPSQHPV ATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHA---QPQQQQQTQQQSDA 267
           RP +PFMPWPH    Q QQQQQTQQQSDA
Sbjct: 241 RPPIPFMPWPHTQAQQQQQQQQTQQQSDA 269

[Close]

BLAST of Lsi03G008200 vs. NCBI nr
Match: XP_022927856.1 (nuclear transcription factor Y subunit C-2-like [Cucurbita moschata] >XP_022927857.1 nuclear transcription factor Y subunit C-2-like [Cucurbita moschata] >KAG7022566.1 Nuclear transcription factor Y subunit C-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 475.3 bits (1222), Expect = 3.4e-130
Identity = 252/269 (93.68%), Postives = 255/269 (94.80%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           MDQSERSQHQQQSQQ AGGVGAGQLPYSNPYQTA M ASGTPAITIPPTQ PSSFSNSPH
Sbjct: 1   MDQSERSQHQQQSQQAAGGVGAGQLPYSNPYQTAPMGASGTPAITIPPTQQPSSFSNSPH 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
           QLA+QQAQHFH QQQQQQQQQLQ+FWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR
Sbjct: 61  QLAFQQAQHFHQQQQQQQQQQLQVFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGGTAQQP 240
           RDELKEEGLGITK SIPVVGSPADLPYYYVPSQHPV ATGMIMGKQLDQANMYG TAQQP
Sbjct: 181 RDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVSATGMIMGKQLDQANMYGATAQQP 240

Query: 241 RPSMPFMPWPHA---QPQQQQQTQQQSDA 267
           RP +PFMPWPH    Q QQQQQTQQQSDA
Sbjct: 241 RPPIPFMPWPHTQAQQQQQQQQTQQQSDA 269

[Close]

BLAST of Lsi03G008200 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 258.8 bits (660), Expect = 4.6e-69
Identity = 150/214 (70.09%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           M+QSE  Q QQQ          G + Y                  +PP    S   N+  
Sbjct: 1   MEQSEEGQQQQQQ---------GVMDY------------------VPPHAYQSGPVNAAS 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
            +A+QQA HFHH  QQQQQQQLQMFWANQMQEIE TTDFKNH+LPLARIKKIMKADEDVR
Sbjct: 61  HMAFQQAHHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIP-VVGSPADLPYYYVPSQ 214
           RDELKEEGLG+TKG+IP VVGSP   PYYY+  Q
Sbjct: 181 RDELKEEGLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]

BLAST of Lsi03G008200 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 258.8 bits (660), Expect = 4.6e-69
Identity = 150/214 (70.09%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 1   MDQSERSQHQQQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPH 60
           M+QSE  Q QQQ          G + Y                  +PP    S   N+  
Sbjct: 1   MEQSEEGQQQQQQ---------GVMDY------------------VPPHAYQSGPVNAAS 60

Query: 61  QLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVR 120
            +A+QQA HFHH  QQQQQQQLQMFWANQMQEIE TTDFKNH+LPLARIKKIMKADEDVR
Sbjct: 61  HMAFQQAHHFHHHHQQQQQQQLQMFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVR 120

Query: 121 MISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180
           MISAEAPVIFAKACEMFILELTLR+WIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP
Sbjct: 121 MISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 180

Query: 181 RDELKEEGLGITKGSIP-VVGSPADLPYYYVPSQ 214
           RDELKEEGLG+TKG+IP VVGSP   PYYY+  Q
Sbjct: 181 RDELKEEGLGVTKGTIPSVVGSP---PYYYLQQQ 184

[Close]

BLAST of Lsi03G008200 vs. TAIR 10
Match: AT1G08970.4 (nuclear factor Y, subunit C9 )

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-58
Identity = 146/259 (56.37%), Postives = 173/259 (66.80%), Query Frame = 0


Query: 11  QQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHF 70
           QQ    +G +  G    +NPYQT  M    T A T+      +  +  P QLA+ Q    
Sbjct: 3   QQDHGQSGAMNYG----TNPYQTNPM---STTAATV------AGGAAQPGQLAFHQI--- 62

Query: 71  HHQQQQQQQ--QQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 130
            HQQQQQQQ  QQLQ FW NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV
Sbjct: 63  -HQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 122

Query: 131 IFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEG 190
           +FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E 
Sbjct: 123 VFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 182

Query: 191 LG-ITKGSIPVVGSPADLPYYYVPS-QHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPF 250
           LG I +G++P   + A  PY Y+P+   P+G  GM+MG          G A  P P M  
Sbjct: 183 LGSIPRGTVPEAAA-AGYPYGYLPAGTAPIGNPGMVMGNP--------GGAYPPNPYM-- 228

Query: 251 MPWPHAQPQQQQQTQQQSD 266
                 QP  QQQ   Q D
Sbjct: 243 -----GQPMWQQQAPDQPD 228

[Close]

BLAST of Lsi03G008200 vs. TAIR 10
Match: AT1G08970.1 (nuclear factor Y, subunit C9 )

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-58
Identity = 146/259 (56.37%), Postives = 173/259 (66.80%), Query Frame = 0


Query: 11  QQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHF 70
           QQ    +G +  G    +NPYQT  M    T A T+      +  +  P QLA+ Q    
Sbjct: 3   QQDHGQSGAMNYG----TNPYQTNPM---STTAATV------AGGAAQPGQLAFHQI--- 62

Query: 71  HHQQQQQQQ--QQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 130
            HQQQQQQQ  QQLQ FW NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV
Sbjct: 63  -HQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 122

Query: 131 IFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEG 190
           +FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E 
Sbjct: 123 VFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 182

Query: 191 LG-ITKGSIPVVGSPADLPYYYVPS-QHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPF 250
           LG I +G++P   + A  PY Y+P+   P+G  GM+MG          G A  P P M  
Sbjct: 183 LGSIPRGTVPEAAA-AGYPYGYLPAGTAPIGNPGMVMGNP--------GGAYPPNPYM-- 228

Query: 251 MPWPHAQPQQQQQTQQQSD 266
                 QP  QQQ   Q D
Sbjct: 243 -----GQPMWQQQAPDQPD 228

[Close]

BLAST of Lsi03G008200 vs. TAIR 10
Match: AT1G08970.3 (nuclear factor Y, subunit C9 )

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-58
Identity = 146/259 (56.37%), Postives = 173/259 (66.80%), Query Frame = 0


Query: 11  QQSQQPAGGVGAGQLPYSNPYQTASMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHF 70
           QQ    +G +  G    +NPYQT  M    T A T+      +  +  P QLA+ Q    
Sbjct: 3   QQDHGQSGAMNYG----TNPYQTNPM---STTAATV------AGGAAQPGQLAFHQI--- 62

Query: 71  HHQQQQQQQ--QQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 130
            HQQQQQQQ  QQLQ FW NQ +EIE+TTDFKNHSLPLARIKKIMKADEDVRMISAEAPV
Sbjct: 63  -HQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPV 122

Query: 131 IFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEG 190
           +FA+ACEMFILELTLRSW HTEENKRRTLQKNDIAAA++RTD+FDFLVDI+PR++L++E 
Sbjct: 123 VFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 182

Query: 191 LG-ITKGSIPVVGSPADLPYYYVPS-QHPVGATGMIMGKQLDQANMYGGTAQQPRPSMPF 250
           LG I +G++P   + A  PY Y+P+   P+G  GM+MG          G A  P P M  
Sbjct: 183 LGSIPRGTVPEAAA-AGYPYGYLPAGTAPIGNPGMVMGNP--------GGAYPPNPYM-- 228

Query: 251 MPWPHAQPQQQQQTQQQSD 266
                 QP  QQQ   Q D
Sbjct: 243 -----GQPMWQQQAPDQPD 228

The following BLAST results are available for this feature:

BLAST of Lsi03G008200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCG7	6.5e-68	70.09	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q655V5	2.6e-64	60.38	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q8L4B2	8.9e-57	56.37	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SMP0	1.4e-54	62.30	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9ZVL3	9.2e-54	54.84	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Lsi03G008200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C190	1.1e-137	97.74	nuclear transcription factor Y subunit C-2 OS=Cucumis melo OX=3656 GN=LOC1034954...	[more]
A0A5A7SLP2	1.1e-137	97.74	Nuclear transcription factor Y subunit C-2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0K5U1	1.1e-137	97.74	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G051420 PE=...	[more]
A0A6J1DV19	2.6e-136	96.62	nuclear transcription factor Y subunit C-2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1JII4	5.6e-131	94.05	nuclear transcription factor Y subunit C-2-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lsi03G008200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888434.1	5.8e-138	97.74	nuclear transcription factor Y subunit C-2-like [Benincasa hispida] >XP_03888843...	[more]
XP_004136852.1	2.2e-137	97.74	nuclear transcription factor Y subunit C-2 [Cucumis sativus] >XP_008455266.1 PRE...	[more]
XP_022157652.1	5.4e-136	96.62	nuclear transcription factor Y subunit C-2 [Momordica charantia] >XP_022157653.1...	[more]
XP_022988890.1	1.2e-130	94.05	nuclear transcription factor Y subunit C-2-like [Cucurbita maxima] >XP_022988891...	[more]
XP_022927856.1	3.4e-130	93.68	nuclear transcription factor Y subunit C-2-like [Cucurbita moschata] >XP_0229278...	[more]

BLAST of Lsi03G008200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56170.1	4.6e-69	70.09	nuclear factor Y, subunit C2	[more]
AT1G56170.2	4.6e-69	70.09	nuclear factor Y, subunit C2	[more]
AT1G08970.4	6.3e-58	56.37	nuclear factor Y, subunit C9	[more]
AT1G08970.1	6.3e-58	56.37	nuclear factor Y, subunit C9	[more]
AT1G08970.3	6.3e-58	56.37	nuclear factor Y, subunit C9	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 57..166 e-value: 5.9E-18 score: 65.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 64..181 e-value: 2.8E-48 score: 165.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 59..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..266
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 9..260
None	No IPR available	PANTHER	PTHR10252:SF117	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9	coord: 9..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G008200.1	Lsi03G008200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity