Lsi03G007440 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G007440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA repair protein XRCC4
Location	chr03: 10163200 .. 10167602 (+)
RNA-Seq Expression	Lsi03G007440
Synteny	Lsi03G007440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGATGAAACTATACCGGATGAATAATGGGGGATGATAATTGACCCGCAAGAGAAAATGTCGTAAACCAATACCATCAACATCAATATAAATGAATTAATATTTGCTTATTTGATTTCAAATTCTGCTCCTCCTTTGACCTTCAGCATCCTTCCACCATTAGCATTTTCAGAGGCGAAGTAAACCCCATGGACGCAACCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCACAGCCGAACGAAAGAAGCTTCATCTTCGTCAAAGGCACTTGGAATCATCACCGCTTCGATCTCTCCATCACCGACGGCCTCAACGCTTGGACGTGCCATGGTGCCATTTCTGATTCTACCACTCAATTAACTTTACTTACTTTCTCTTCTCTTTCGCTCTTCTCTCGACTTTATTCTCATATTACTATGTTTCCTCCTCAATTTGTCTTGGACAGCAATGGAGGACCAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCATCGGACTATGTGGCCTTGGCCGAGCGCTATTTAGGGTTTCAACAGGCTGGCTCGGTCTATGCATTTGCCGATGCTGGCAATGGGGACAAGAGGGTTTGTGCTTATTCCGTTTCATATCCTTATTTGGTTTTTTTTTTTCTCTTCCTTATTCGATACTGATGGGGTAATAAAAGATTTTATGAGGCACTGTTCGTTGTATATGTACTAGGAAGCATACGATAGGCTCTCAATTTGATTTCAAATTCGCCTCTTTGAATGCCTTTATTATTGTTGAAGAGTAAATTGAACGGAGATCTTGCTGAATAGTATTAACTTCCAGGTCTACTAGTGTGTTAACAACAATCTGGTAATGGAGTATTGAAAAAACCAATATGTTTAGTAAATGTGATGATGGTGGTTTCAAAAGGACACTTCGAAATGGATTGACATGGTTCTTAAACTTCGCTGATATCAACTAACTGTAAGATGATATGGCGGTTGGATTATCAACAATACCTTGCTGATATGGTGGGGTAATTAATTTAATAGTACTTTTTATGACTAAAAATTACTATCTCCTCCCTCTCCTTGTTTCTCTCTCCTTTGGCAAATCTCTTAGCTGCTCACAATTTCTCCTTTTAAGATCTCATGGACCAGATAGACACCAACTTCATATTTTAGGAACAAAAAGTGTAGTTTGTCTGTACATTATTATATCAGGTTAAGCTTGGTTAAAAATTTTAAGCCTAGTATAAATTTAGGAATTCAATTCTAACCATTAATCCATTTGGGTGGGTTTGTGGTTTTGAAATCTCATGGACCAAATAGACAACTTCATATTTTATGGATCAAATGTATAGTTTGTCTATACATGATTTCATCAGGTTAAGCTTGGTTAATTTTTTAGTCTAGTATAAATTTAAGAATTTTATTATAATCACCAATCTCATTGGGTGGGCTAGGTGGTTTTGATACAGTAATATTGCGAATTTTGAAGAGGGATTCAATTATCTCAACATTAAAGCTTGGGTTTTCATTGTAACTTTTTTGGACCACATTGATTGACATTTTTTACTGATGCTTATGTAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAAACAACTACAGCAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTAGAATGTTTTAGATTTTCTCAAGGTTACTTCTGTTCAGCTATTTGGCCATACTTCTCATTAATTTCTTGAGCATATTGTTCAATTATATATAGTCACTTATTAGTGATTTACATGAATGGATTAACAAGATTGGCAATTTCCCTATCCAAAAAAAAAAAAAAAGAGAAAGTTACTGATGGTAACCTATTTCATGACCATTGGATTGGATCTTTAGTCTAGCTGTGCTTTTTAATACAGAAGGACGCTAAAGTGGAATAGCTCTAGCACACGACTTGTAAAACAATGGTCACAGCCCTCTGTTTGGTTCTATTATGTGCTTGGTGTCTAAACATACAGATAGTTATTTATCTTTTCTAAACTCTGATAAGGTGTCAGAAACACCAGTTACTATGAAAATTGCAGAGTTAAATTGATTTGTTTAAAAGAATAATGATTTGGAAGTCAATTAGGAGACTCCAAATTAGTCATTTTTATTGGAAATATTATTTTTTCATTCTGCTTTCTTCTCTGGCACACCAATTTGACTTCATGTGGCCTTGAGTTGTGCCTTGGAGATGTTCTGTTAACTTTCTCTTATAACTTGTGCCTTCTTGATTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAACTCAATCATTTGAGAGGCTCAAGGCGGAGTCTGAGAAATGTTTGGCTCAGAGTGAGAAGATTTGTGTGGAAAAGGTGGAGTTTGAAACTGCAATATACGCAAAGGTACTGAAAATTTCACATTGTGATTTGAACTTCATCCTATGTGATTTCATCTTTGTGATCTCAGTCCGTGTAGTACCATTCTGAACTAATTCTTCTTCAGAAATCATGCCTTTAGTTTCAAAAGTGTAACATCATGCAATAAGTACGTTTCCATTTTATCAATGGAGAAAATTTTGTTCCTTCTATTTGTAAGTGTAGCATGACGTCTTGTGGTAAGAAAAGCTACCGTTTACATAATTGTGTTTTCTTTGTAACTAATAGTTCTATTAACCCAGACACTAAAGTATTGGAAGAATAAGGATTTACTCAATTCTACAATGAGGCAATTTTTTCTTTGGCATTAATCTACTTGTCATATGTGTTTGTGCTTCATTGTTCAAGGTTGGTTGACTCCAGAGTTGGTAATTTGGTACGGGGCATTCTTTTTCTACTTTCTGGTTGGAAATTCCGATTTTTGATTGCTTACTGAAATTGATGTAGTAAGATTAGAGTCTTATGGGCAAATCTTTAATTTATTAGGATTAGGTTAGTTTCTTTAATTAATTAGTATTAGGATTAATTTCTTTGATTTATTAGGACAAGGATTAGTTTCTTTAATTAATTAGGATTAGGATTAGTTTGCTTTCCAATTCTCTATAAATAGAGAGAATACCTTCTTGTTTTGGCAAGTTTAATTGATTTGAATAAAATTCTCTCTTGATTCATCAGAAATATAGATGGAAAAGTTATTTCTTGCTACCCCTGCCAAATCATTCATTATGGACAGACCAAAGTTCGATATATACCTAGGTTCTAGCGATGATGTCAGTATGTTCTCAGCCCAACATGACTTTGATGTAACTGGTTTATTTGCTTGAGAGAGGAAGATGCATTGCCAAGGATGATCCTAGAGATCCTTAATATTCCTGATTCCTATCTCCCAACTAATGAAAACAGTACTACCTGCTCTCTACATAGCCAGTAAATGGTATCGATACCACACTCTGTCTTTCTCTATTGTGGCTGATAGGGGTTTGAGGTCTACAAAAAGGGTCCTCAATGGGCCTTAACTAGGTCTACAAACAGCACTATATTTGTTTTGCACCTAGGTTGTATATTTGTGTCTTTTCTTAACACTTCCCTCACTTGTGGGCTTGAAAATGTGTATAAGACCCAACAAGTGGAAACCAATATTACTTGGGGAGGAAGTAACATTATAACAGTTTGAACACAGGACTTTCTACTCTGATACCATGTTAAATCACAAAAGTCGAAGGTGATAGGTTTTGGTAAATTTAATTATATCAACACTTTAACAACTCCTATGTTGTATATTTGTGTCAATCCCTTTGGATTTGGGAAATGATATGTATAATCCATATTTACTTGAACTTTTATTTGCAGTACATATCGAAATGCAATGTTGACAGATAATAAATTCCCAAATCTCTTTGAGCTCATAATCTCTAATGAATGTTTCATCTATTACTGAAATGGCACCACCTGTTTCTTACTTGACATCTGTAAATGTTGTTTTCGTTGCTTTCAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCCAAACCGACTACTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGAAAGTGATGCATAAAAGAACTGACAAAGTATCTATCATTCAGACTTGAAAGCCTCTAACTGGTATGACTTCTGGATCGAGGAAGCTTACATGATATAAGTCGGATTTGTTATCTGTGATAGTATGTTAAACTTTTATTTTTCTTCTCCTCTTTTGAGCACACAACACAAATGTGGAGAGTGAGGATTTGAATCTTGTACTGGTGAACTATGTTTATAGAAACAGGGAACCGTGCAAAATACTACACTTAAAAATATATATATATATATATATAGTTTTCTTGG

mRNA sequence

TATTGATGAAACTATACCGGATGAATAATGGGGGATGATAATTGACCCGCAAGAGAAAATGTCGTAAACCAATACCATCAACATCAATATAAATGAATTAATATTTGCTTATTTGATTTCAAATTCTGCTCCTCCTTTGACCTTCAGCATCCTTCCACCATTAGCATTTTCAGAGGCGAAGTAAACCCCATGGACGCAACCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCACAGCCGAACGAAAGAAGCTTCATCTTCGTCAAAGGCACTTGGAATCATCACCGCTTCGATCTCTCCATCACCGACGGCCTCAACGCTTGGACGTGCCATGCAATGGAGGACCAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCATCGGACTATGTGGCCTTGGCCGAGCGCTATTTAGGGTTTCAACAGGCTGGCTCGGTCTATGCATTTGCCGATGCTGGCAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAAACAACTACAGCAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCATTTGAGAGGCTCAAGGCGGAGTCTGAGAAATGTTTGGCTCAGAGTGAGAAGATTTGTGTGGAAAAGGTGGAGTTTGAAACTGCAATATACGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCCAAACCGACTACTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGAAAGTGATGCATAAAAGAACTGACAAAGTATCTATCATTCAGACTTGAAAGCCTCTAACTGGTATGACTTCTGGATCGAGGAAGCTTACATGATATAAGTCGGATTTGTTATCTGTGATAGTATGTTAAACTTTTATTTTTCTTCTCCTCTTTTGAGCACACAACACAAATGTGGAGAGTGAGGATTTGAATCTTGTACTGGTGAACTATGTTTATAGAAACAGGGAACCGTGCAAAATACTACACTTAAAAATATATATATATATATATATAGTTTTCTTGG

Coding sequence (CDS)

ATGGACGCAACCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCACAGCCGAACGAAAGAAGCTTCATCTTCGTCAAAGGCACTTGGAATCATCACCGCTTCGATCTCTCCATCACCGACGGCCTCAACGCTTGGACGTGCCATGCAATGGAGGACCAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCATCGGACTATGTGGCCTTGGCCGAGCGCTATTTAGGGTTTCAACAGGCTGGCTCGGTCTATGCATTTGCCGATGCTGGCAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAAACAACTACAGCAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCATTTGAGAGGCTCAAGGCGGAGTCTGAGAAATGTTTGGCTCAGAGTGAGAAGATTTGTGTGGAAAAGGTGGAGTTTGAAACTGCAATATACGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCCAAACCGACTACTACTGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTCGACGAAAGTGATGCATAA

Protein sequence

MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRAAQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESFDESDA

Homology

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BLAST of Lsi03G007440 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 277.3 bits (708), Expect = 1.5e-73
Identity = 137/224 (61.16%), Postives = 177/224 (79.02%), Query Frame = 0


Query: 2   DATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRAA 61
           + T+HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG ++W C+A E++V  RAA
Sbjct: 21  EKTKHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAA 80

Query: 62  QWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPASD 121
           QWDQ  S+Y+ LAE+YLGFQQ  SVY+F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D
Sbjct: 81  QWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDD 140

Query: 122 NKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIYA 181
           +K  T GILDFLM+ANIRLSEEVV KT+SFE++++E+E+CLAQ EK+C EK EFE+A YA
Sbjct: 141 SKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYA 200

Query: 182 KFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESFD 226
           KFL+VLNAKKAKLR  RD+         ++ +EE S+DK ESF+
Sbjct: 201 KFLSVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFE 233

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BLAST of Lsi03G007440 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 214/230 (93.04%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ERS IFVKGTWNHHRFDLSITDGL+AWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQ GS+Y FADAGNG KRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS ERLKAESEKCLAQSEKIC EKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLNAKKAKLREYRDQLSK TTTGSKLKQEEYSSDKTESF DESDA
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDA 230

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BLAST of Lsi03G007440 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 214/230 (93.04%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ERS IFVKGTWNHHRFDLSITDGL+AWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQ GS+Y FADAGNG KRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS ERLKAESEKCLAQSEKIC EKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLNAKKAKLREYRDQLSK TTTGSKLKQEEYSSDKTESF DESDA
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDA 230

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BLAST of Lsi03G007440 vs. ExPASy TrEMBL
Match: A0A0A0K2L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.1e-113
Identity = 211/230 (91.74%), Postives = 216/230 (93.91%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQPNERS IFVKGTWNH RFDLSITDG +AWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQ GS+Y FADAGNG KRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK QS ERLKAESEKCLAQSEKIC EKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLNAKKAKLREYRDQLS+ T TGSKLKQEEYSSDKTESF DESDA
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDA 230

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BLAST of Lsi03G007440 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 9.2e-106
Identity = 196/230 (85.22%), Postives = 207/230 (90.00%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ R  IFVKGTW  HRFDLSITDGLNAWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQ  SVY FAD GNGDKRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGILDFLMDANIRLSEEVVRKTQSFE+LK ESEKCLAQSE+IC EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLN KKAKLREYRDQ  K TTT SKLKQ++  SDKTESF D+SDA
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDA 230

[Close]

BLAST of Lsi03G007440 vs. ExPASy TrEMBL
Match: A0A6J1I7A5 (DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.1e-105
Identity = 196/230 (85.22%), Postives = 206/230 (89.57%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ R  IFVKGTW  HRFDLSITDGLNAWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV LAERYLGFQQ  SVY FAD GNGDKRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGILDFLMDANIRLSEEVVRKTQSFE+LK ESEKCLAQSE+IC EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLN KKAKLREYRDQ  K TTT SKLKQ++  SDKTESF D+SDA
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDA 230

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BLAST of Lsi03G007440 vs. NCBI nr
Match: XP_038888651.1 (DNA repair protein XRCC4 [Benincasa hispida])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 212/230 (92.17%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDATRHTCLKLEVPTNAQPN+RS IFVKGTWNHH FDLSITDGLNAW+CHA ED+V LRA
Sbjct: 1   MDATRHTCLKLEVPTNAQPNDRSSIFVKGTWNHHHFDLSITDGLNAWSCHATEDEVLLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQ GSVY F DAGNGD+RLSWTFDKEGMKLEWRWKC+PAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSVYGFTDAGNGDRRLSWTFDKEGMKLEWRWKCKPAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGILDFLMDANIRLSEEVVRKTQ FERLK+ESE+CLAQSEKIC EKVEFETAIY
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQLFERLKSESERCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLNAKKAKLREYRDQLSK TTTGSKLKQEEYSSDKTESF DESDA
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDA 230

[Close]

BLAST of Lsi03G007440 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa])

HSP 1 Score: 425.2 bits (1092), Expect = 3.5e-115
Identity = 214/230 (93.04%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ERS IFVKGTWNHHRFDLSITDGL+AWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQ GS+Y FADAGNG KRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS ERLKAESEKCLAQSEKIC EKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLNAKKAKLREYRDQLSK TTTGSKLKQEEYSSDKTESF DESDA
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDA 230

[Close]

BLAST of Lsi03G007440 vs. NCBI nr
Match: XP_004136882.1 (DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_017256 [Cucumis sativus])

HSP 1 Score: 418.3 bits (1074), Expect = 4.2e-113
Identity = 211/230 (91.74%), Postives = 216/230 (93.91%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQPNERS IFVKGTWNH RFDLSITDG +AWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQEPSDYVALAERYLGFQQ GS+Y FADAGNG KRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGIL+FLMDANIRLSEEVVRK QS ERLKAESEKCLAQSEKIC EKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLNAKKAKLREYRDQLS+ T TGSKLKQEEYSSDKTESF DESDA
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDA 230

[Close]

BLAST of Lsi03G007440 vs. NCBI nr
Match: KAG6571850.1 (DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 196/230 (85.22%), Postives = 207/230 (90.00%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ R  IFVKGTW  HRFDLSITDGLNAWTCHA ED+VRLRA
Sbjct: 357 MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 416

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQ  SVY FAD GNGDKRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 417 EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 476

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGILDFLMDANIRLSEEVVRKTQSFE+LK ESEKCLAQSE+IC EKVEFETA+Y
Sbjct: 477 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 536

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLN KKAKLREYRDQ  K TTT SKLKQ++  SDKTESF D+SDA
Sbjct: 537 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDA 586

[Close]

BLAST of Lsi03G007440 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 392.9 bits (1008), Expect = 1.9e-105
Identity = 196/230 (85.22%), Postives = 207/230 (90.00%), Query Frame = 0


Query: 1   MDATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRA 60
           MDA RHTCLKLEVPTNAQP+ R  IFVKGTW  HRFDLSITDGLNAWTCHA ED+VRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQEPSDYV+LAERYLGFQQ  SVY FAD GNGDKRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIY 180
           DNKTTTAGILDFLMDANIRLSEEVVRKTQSFE+LK ESEKCLAQSE+IC EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESF-DESDA 230
           AKFLNVLN KKAKLREYRDQ  K TTT SKLKQ++  SDKTESF D+SDA
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDA 230

[Close]

BLAST of Lsi03G007440 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-74
Identity = 137/224 (61.16%), Postives = 177/224 (79.02%), Query Frame = 0


Query: 2   DATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRAA 61
           + T+HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG ++W C+A E++V  RAA
Sbjct: 21  EKTKHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAA 80

Query: 62  QWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPASD 121
           QWDQ  S+Y+ LAE+YLGFQQ  SVY+F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D
Sbjct: 81  QWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDD 140

Query: 122 NKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIYA 181
           +K  T GILDFLM+ANIRLSEEVV KT+SFE++++E+E+CLAQ EK+C EK EFE+A YA
Sbjct: 141 SKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYA 200

Query: 182 KFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESFD 226
           KFL+VLNAKKAKLR  RD+         ++ +EE S+DK ESF+
Sbjct: 201 KFLSVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFE 233

[Close]

BLAST of Lsi03G007440 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 277.3 bits (708), Expect = 1.1e-74
Identity = 137/224 (61.16%), Postives = 177/224 (79.02%), Query Frame = 0


Query: 2   DATRHTCLKLEVPTNAQPNERSFIFVKGTWNHHRFDLSITDGLNAWTCHAMEDQVRLRAA 61
           + T+HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG ++W C+A E++V  RAA
Sbjct: 21  EKTKHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAA 80

Query: 62  QWDQEPSDYVALAERYLGFQQAGSVYAFADAGNGDKRLSWTFDKEGMKLEWRWKCQPASD 121
           QWDQ  S+Y+ LAE+YLGFQQ  SVY+F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D
Sbjct: 81  QWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDD 140

Query: 122 NKTTTAGILDFLMDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIYA 181
           +K  T GILDFLM+ANIRLSEEVV KT+SFE++++E+E+CLAQ EK+C EK EFE+A YA
Sbjct: 141 SKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYA 200

Query: 182 KFLNVLNAKKAKLREYRDQLSKPTTTGSKLKQEEYSSDKTESFD 226
           KFL+VLNAKKAKLR  RD+         ++ +EE S+DK ESF+
Sbjct: 201 KFLSVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFE 233

[Close]

BLAST of Lsi03G007440 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 )

HSP 1 Score: 99.0 bits (245), Expect = 5.3e-21
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 134 MDANIRLSEEVVRKTQSFERLKAESEKCLAQSEKICVEKVEFETAIYAKFLNVLNAKKAK 193
           M+ANIRLSEEVV KT+SFE++K+E+E+CLAQ EK+C EK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LREYRDQLSKPTTTGSKLKQEEYSSDKTESFD 226
           LR  RD+         +  +EE S+ K ESF+
Sbjct: 61  LRAVRDK-----EDSVRAVEEEESTYKAESFE 87

The following BLAST results are available for this feature:

BLAST of Lsi03G007440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682V0	1.5e-73	61.16	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of Lsi03G007440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SK69	1.7e-115	93.04	DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BZW1	1.7e-115	93.04	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
A0A0A0K2L2	2.1e-113	91.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1	[more]
A0A6J1GJL0	9.2e-106	85.22	DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1	[more]
A0A6J1I7A5	2.1e-105	85.22	DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 ...	[more]

BLAST of Lsi03G007440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888651.1	1.2e-115	92.17	DNA repair protein XRCC4 [Benincasa hispida]	[more]
XP_008455175.1	3.5e-115	93.04	PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair prot...	[more]
XP_004136882.1	4.2e-113	91.74	DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_...	[more]
KAG6571850.1	1.9e-105	85.22	DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952201.1	1.9e-105	85.22	DNA repair protein XRCC4 [Cucurbita moschata]	[more]

BLAST of Lsi03G007440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23100.1	1.1e-74	61.16	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT3G23100.2	1.1e-74	61.16	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	5.3e-21	60.87	DNA double-strand break repair and VJ recombination XRCC4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 120..216 e-value: 2.8E-15 score: 58.1
IPR038051	XRCC4-like, N-terminal domain superfamily	GENE3D	2.170.210.10		coord: 11..119 e-value: 5.9E-6 score: 27.8
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 35..226 e-value: 1.2E-12 score: 47.4
IPR010585	DNA repair protein XRCC4	PANTHER	PTHR28559	DNA REPAIR PROTEIN XRCC4	coord: 1..227
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..229
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 122..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G007440.1	Lsi03G007440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0051351	positive regulation of ligase activity
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex
cellular_component	GO:0032807	DNA ligase IV complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity