Lsi03G007040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G007040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ULP_PROTEASE domain-containing protein
Location	chr03: 9278811 .. 9279850 (+)
RNA-Seq Expression	Lsi03G007040
Synteny	Lsi03G007040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTAAATAGATATTTGGGAGAAAATTCCAGACTCTTGTTTACTAGAATTGTATATAATATGACAATAAAAGGAGAATATGATTAATAGACATATCGTTAAACTGCTTATAATATTCTCATTTGTAAACCTAACAGAAAGCATACAACTATAACTCACACACATCTATTATAGCGTGTTAAATGATAATGCACACAATACTAATGAACATCATACGTAATCTACAGCCACGATATAATAATTGTTTTGTTTTCTTACCCAAAAATTCCAATCAGTTTTATTATATTTAGTTTGTTCTTGGAATATTATCAGATTGGAGGCAATGTGTGGAGCACCTTGGCTATCACATACATCAGAGTTTGGTTGGAATTATGAATATTAATGTTCTTGGTCAGATCTGTATTCATATAGCTCTACATAAAAGTTATCCATAGTTCCATATTAAATTATATAAAAGATGTGCTTTTACATTTGTTTTTCGTTTCTATTTTTGGGGCACAGGAAGATGAGAATGGTGAAATAGCTGATTCACCACAATTCTTGGAAGATCGCCCCCAAGCTTCGGCAGTTTCTGAATGTTCATCAGCCTTCAGCTTTGGCCAACAATTTACAGAATTAGAAATATCTCGGGAGGGGAGATTTTCTAGAAACGTAAACGATACAGGTAGAACATTGTCGCCTCGGCCATTGCTTGGTGAGTCGCAAACCACATTGGAATTGAGACGAGATTGCACACCTCAAGCAACAAAGAGTCTGAACCATCCAACTGAAGCAGATAATGAACCAGAGATCTTAACCAGCTCAAGTGAAGAACTTGTCACTTGTGTAGTAGAAGACTCAGAGGAGGAGGGAAATGAAAGGAATGATGGAATCGAGATTGATGTTTCTTCCTCCTCAAGGAACGACTTGTTCCTGTCAAGGCAAGTGGTTGAATCTATTGCAAACTTAAGTGATAATAGACAACATGATCTGATACTAAGCAATGAACATCCAACGCTTGATTCTAGCAAGCAGCATTGTGCCAATAGGCCTAGCTAG

mRNA sequence

ATGCGCTTTGGCCAACAATTTACAGAATTAGAAATATCTCGGGAGGGGAGATTTTCTAGAAACGTAAACGATACAGGTAGAACATTGTCGCCTCGGCCATTGCTTGGTGAGTCGCAAACCACATTGGAATTGAGACGAGATTGCACACCTCAAGCAACAAAGAGTCTGAACCATCCAACTGAAGCAGATAATGAACCAGAGATCTTAACCAGCTCAAGTGAAGAACTTGTCACTTGTGTAGTAGAAGACTCAGAGGAGGAGGGAAATGAAAGGAATGATGGAATCGAGATTGATGTTTCTTCCTCCTCAAGGAACGACTTGTTCCTGTCAAGGCAAGTGGTTGAATCTATTGCAAACTTAAGTGATAATAGACAACATGATCTGATACTAAGCAATGAACATCCAACGCTTGATTCTAGCAAGCAGCATTGTGCCAATAGGCCTAGCTAG

Coding sequence (CDS)

ATGCGCTTTGGCCAACAATTTACAGAATTAGAAATATCTCGGGAGGGGAGATTTTCTAGAAACGTAAACGATACAGGTAGAACATTGTCGCCTCGGCCATTGCTTGGTGAGTCGCAAACCACATTGGAATTGAGACGAGATTGCACACCTCAAGCAACAAAGAGTCTGAACCATCCAACTGAAGCAGATAATGAACCAGAGATCTTAACCAGCTCAAGTGAAGAACTTGTCACTTGTGTAGTAGAAGACTCAGAGGAGGAGGGAAATGAAAGGAATGATGGAATCGAGATTGATGTTTCTTCCTCCTCAAGGAACGACTTGTTCCTGTCAAGGCAAGTGGTTGAATCTATTGCAAACTTAAGTGATAATAGACAACATGATCTGATACTAAGCAATGAACATCCAACGCTTGATTCTAGCAAGCAGCATTGTGCCAATAGGCCTAGCTAG

Protein sequence

MRFGQQFTELEISREGRFSRNVNDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTEADNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLSDNRQHDLILSNEHPTLDSSKQHCANRPS

Homology

[Close]

BLAST of Lsi03G007040 vs. ExPASy TrEMBL
Match: A0A5A7SPN7 (Putative ubiquitin-like-specific protease 2A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G002040 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.3e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNV-NDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTE 62
           FGQQFTELEIS EGR+S+NV  D  R  SPRP L E QTTL+L +D TPQATK+ NHPTE
Sbjct: 690 FGQQFTELEISWEGRYSQNVKEDMCRKPSPRPSLHELQTTLKLGQDSTPQATKNPNHPTE 749

Query: 63  ADNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLS 122
           ADN+ EILTSSS+EL+ CVVEDSEEEGNERND IEI+VSSSSRN+LFLSRQVVES AN S
Sbjct: 750 ADNQLEILTSSSDELINCVVEDSEEEGNERNDRIEIEVSSSSRNNLFLSRQVVESTANFS 809

Query: 123 D-NRQHD 128
           D NRQH+
Sbjct: 810 DNNRQHE 816

[Close]

BLAST of Lsi03G007040 vs. ExPASy TrEMBL
Match: A0A5D3C6W6 (Putative ubiquitin-like-specific protease 2A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002040 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.3e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNV-NDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTE 62
           FGQQFTELEIS EGR+S+NV  D  R  SPRP L E QTTL+L +D TPQATK+ NHPTE
Sbjct: 112 FGQQFTELEISWEGRYSQNVKEDMCRKPSPRPSLHELQTTLKLGQDSTPQATKNPNHPTE 171

Query: 63  ADNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLS 122
           ADN+ EILTSSS+EL+ CVVEDSEEEGNERND IEI+VSSSSRN+LFLSRQVVES AN S
Sbjct: 172 ADNQLEILTSSSDELINCVVEDSEEEGNERNDRIEIEVSSSSRNNLFLSRQVVESTANFS 231

Query: 123 D-NRQHD 128
           D NRQH+
Sbjct: 232 DNNRQHE 238

[Close]

BLAST of Lsi03G007040 vs. ExPASy TrEMBL
Match: A0A1S3C1G7 (probable ubiquitin-like-specific protease 2A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495387 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.3e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNV-NDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTE 62
           FGQQFTELEIS EGR+S+NV  D  R  SPRP L E QTTL+L +D TPQATK+ NHPTE
Sbjct: 690 FGQQFTELEISWEGRYSQNVKEDMCRKPSPRPSLHELQTTLKLGQDSTPQATKNPNHPTE 749

Query: 63  ADNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLS 122
           ADN+ EILTSSS+EL+ CVVEDSEEEGNERND IEI+VSSSSRN+LFLSRQVVES AN S
Sbjct: 750 ADNQLEILTSSSDELINCVVEDSEEEGNERNDRIEIEVSSSSRNNLFLSRQVVESTANFS 809

Query: 123 D-NRQHD 128
           D NRQH+
Sbjct: 810 DNNRQHE 816

[Close]

BLAST of Lsi03G007040 vs. ExPASy TrEMBL
Match: A0A1S3C0Z2 (probable ubiquitin-like-specific protease 2A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495387 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.3e-39
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNV-NDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTE 62
           FGQQFTELEIS EGR+S+NV  D  R  SPRP L E QTTL+L +D TPQATK+ NHPTE
Sbjct: 701 FGQQFTELEISWEGRYSQNVKEDMCRKPSPRPSLHELQTTLKLGQDSTPQATKNPNHPTE 760

Query: 63  ADNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLS 122
           ADN+ EILTSSS+EL+ CVVEDSEEEGNERND IEI+VSSSSRN+LFLSRQVVES AN S
Sbjct: 761 ADNQLEILTSSSDELINCVVEDSEEEGNERNDRIEIEVSSSSRNNLFLSRQVVESTANFS 820

Query: 123 D-NRQHD 128
           D NRQH+
Sbjct: 821 DNNRQHE 827

[Close]

BLAST of Lsi03G007040 vs. ExPASy TrEMBL
Match: A0A6J1CM38 (probable ubiquitin-like-specific protease 2A isoform X6 OS=Momordica charantia OX=3673 GN=LOC111012217 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 7.2e-35
Identity = 95/167 (56.89%), Postives = 107/167 (64.07%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNVNDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTEA 62
           FGQQF ELEIS EGRFSRN  D  R  S +P LGES T     RD +PQA K L+HPTEA
Sbjct: 702 FGQQFRELEISTEGRFSRNAKDKDRRPSSQPSLGESHTISVSGRDYSPQANKRLDHPTEA 761

Query: 63  DNEPEILTSSSEELVTCVVEDSEEE---------------------GNERNDGIEIDVSS 122
           D EPE LT+SSEEL TCVVEDSEEE                     GN  +D  EI++SS
Sbjct: 762 D-EPETLTTSSEELATCVVEDSEEEYIVEDSEEADEMYNGIEVVQSGNSMHDSKEIEISS 821

Query: 123 SSRNDLFLSRQVVESIANLSDNRQHDLILSNEHPTLDSSKQHCANRP 149
           S +ND FLSR+  ES A+ +DNRQHDLI+SN H    SSKQH A RP
Sbjct: 822 SLKNDSFLSREAGESSADFNDNRQHDLIVSNVHTAYGSSKQHSAKRP 867

[Close]

BLAST of Lsi03G007040 vs. NCBI nr
Match: XP_038888439.1 (probable ubiquitin-like-specific protease 2A isoform X1 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNVNDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTEA 62
           FGQQFTELEIS EGRFSRN+ DTGRT SPRPL  ESQTT EL RDCTPQ TKSLNHPTEA
Sbjct: 681 FGQQFTELEISWEGRFSRNIKDTGRTPSPRPLHRESQTTFELGRDCTPQETKSLNHPTEA 740

Query: 63  DNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLSD 122
           DNEP ILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRN+LFLS+QVVES AN SD
Sbjct: 741 DNEPLILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNNLFLSKQVVESTANSSD 800

Query: 123 NRQHDLILSNEHPTLDSSKQHCANRPS 150
           NRQHDLILSNEHPT DSSKQHC+NRPS
Sbjct: 801 NRQHDLILSNEHPTFDSSKQHCSNRPS 827

[Close]

BLAST of Lsi03G007040 vs. NCBI nr
Match: XP_038888442.1 (uncharacterized protein LOC120078284 isoform X4 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNVNDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTEA 62
           FGQQFTELEIS EGRFSRN+ DTGRT SPRPL  ESQTT EL RDCTPQ TKSLNHPTEA
Sbjct: 564 FGQQFTELEISWEGRFSRNIKDTGRTPSPRPLHRESQTTFELGRDCTPQETKSLNHPTEA 623

Query: 63  DNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLSD 122
           DNEP ILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRN+LFLS+QVVES AN SD
Sbjct: 624 DNEPLILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNNLFLSKQVVESTANSSD 683

Query: 123 NRQHDLILSNEHPTLDSSKQHCANRPS 150
           NRQHDLILSNEHPT DSSKQHC+NRPS
Sbjct: 684 NRQHDLILSNEHPTFDSSKQHCSNRPS 710

[Close]

BLAST of Lsi03G007040 vs. NCBI nr
Match: XP_038888441.1 (probable ubiquitin-like-specific protease 2A isoform X3 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNVNDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTEA 62
           FGQQFTELEIS EGRFSRN+ DTGRT SPRPL  ESQTT EL RDCTPQ TKSLNHPTEA
Sbjct: 628 FGQQFTELEISWEGRFSRNIKDTGRTPSPRPLHRESQTTFELGRDCTPQETKSLNHPTEA 687

Query: 63  DNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLSD 122
           DNEP ILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRN+LFLS+QVVES AN SD
Sbjct: 688 DNEPLILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNNLFLSKQVVESTANSSD 747

Query: 123 NRQHDLILSNEHPTLDSSKQHCANRPS 150
           NRQHDLILSNEHPT DSSKQHC+NRPS
Sbjct: 748 NRQHDLILSNEHPTFDSSKQHCSNRPS 774

[Close]

BLAST of Lsi03G007040 vs. NCBI nr
Match: XP_038888440.1 (probable ubiquitin-like-specific protease 2A isoform X2 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 9.9e-63
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNVNDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTEA 62
           FGQQFTELEIS EGRFSRN+ DTGRT SPRPL  ESQTT EL RDCTPQ TKSLNHPTEA
Sbjct: 654 FGQQFTELEISWEGRFSRNIKDTGRTPSPRPLHRESQTTFELGRDCTPQETKSLNHPTEA 713

Query: 63  DNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLSD 122
           DNEP ILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRN+LFLS+QVVES AN SD
Sbjct: 714 DNEPLILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNNLFLSKQVVESTANSSD 773

Query: 123 NRQHDLILSNEHPTLDSSKQHCANRPS 150
           NRQHDLILSNEHPT DSSKQHC+NRPS
Sbjct: 774 NRQHDLILSNEHPTFDSSKQHCSNRPS 800

[Close]

BLAST of Lsi03G007040 vs. NCBI nr
Match: XP_008455146.1 (PREDICTED: probable ubiquitin-like-specific protease 2A isoform X2 [Cucumis melo] >KAA0031447.1 putative ubiquitin-like-specific protease 2A isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 97/127 (76.38%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 3   FGQQFTELEISREGRFSRNV-NDTGRTLSPRPLLGESQTTLELRRDCTPQATKSLNHPTE 62
           FGQQFTELEIS EGR+S+NV  D  R  SPRP L E QTTL+L +D TPQATK+ NHPTE
Sbjct: 690 FGQQFTELEISWEGRYSQNVKEDMCRKPSPRPSLHELQTTLKLGQDSTPQATKNPNHPTE 749

Query: 63  ADNEPEILTSSSEELVTCVVEDSEEEGNERNDGIEIDVSSSSRNDLFLSRQVVESIANLS 122
           ADN+ EILTSSS+EL+ CVVEDSEEEGNERND IEI+VSSSSRN+LFLSRQVVES AN S
Sbjct: 750 ADNQLEILTSSSDELINCVVEDSEEEGNERNDRIEIEVSSSSRNNLFLSRQVVESTANFS 809

Query: 123 D-NRQHD 128
           D NRQH+
Sbjct: 810 DNNRQHE 816

The following BLAST results are available for this feature:

BLAST of Lsi03G007040 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G007040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPN7	6.3e-39	76.38	Putative ubiquitin-like-specific protease 2A isoform X2 OS=Cucumis melo var. mak...	[more]
A0A5D3C6W6	6.3e-39	76.38	Putative ubiquitin-like-specific protease 2A isoform X2 OS=Cucumis melo var. mak...	[more]
A0A1S3C1G7	6.3e-39	76.38	probable ubiquitin-like-specific protease 2A isoform X2 OS=Cucumis melo OX=3656 ...	[more]
A0A1S3C0Z2	6.3e-39	76.38	probable ubiquitin-like-specific protease 2A isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A6J1CM38	7.2e-35	56.89	probable ubiquitin-like-specific protease 2A isoform X6 OS=Momordica charantia O...	[more]

BLAST of Lsi03G007040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888439.1	9.9e-63	89.12	probable ubiquitin-like-specific protease 2A isoform X1 [Benincasa hispida]	[more]
XP_038888442.1	9.9e-63	89.12	uncharacterized protein LOC120078284 isoform X4 [Benincasa hispida]	[more]
XP_038888441.1	9.9e-63	89.12	probable ubiquitin-like-specific protease 2A isoform X3 [Benincasa hispida]	[more]
XP_038888440.1	9.9e-63	89.12	probable ubiquitin-like-specific protease 2A isoform X2 [Benincasa hispida]	[more]
XP_008455146.1	1.3e-38	76.38	PREDICTED: probable ubiquitin-like-specific protease 2A isoform X2 [Cucumis melo...	[more]

BLAST of Lsi03G007040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G007040.1	Lsi03G007040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity