Lsi03G006670 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G006670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 8463972 .. 8464393 (-)
RNA-Seq ExpressionLsi03G006670
SyntenyLsi03G006670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACGAATAAGCCCACGAATGAGGGCATGCCGACAAGGAGGGAGGAGGAGGAGCGATGTGGACCCTTAGACTTTGACCAGAGGGATGGAGTCAATGTTGCACCGAGTGTATACTCCTACCTGCGGAGCATTGATAGTTTTGTATCAAAGTTGGAGGGTCGTGTATCAAAGGTCGATGAAGACCTAAGTTACGTGAAAGTACAACTGACGACCATTACATCATTGTTACAGTCTTTGATTAAGGTTTGTCTTTTTTCATTTGTAACCTTCAATGTTTTTGTTTACATTTTTTGTTAACTAATATTTTCATATGATGATTGAAGGATCCCACCATGGTAGATTCGAGGAAGTCCCCCAAGCCCACCGCAAGACTCGGGTTCGAGGAGATCACCCGCCCCACCCTGCGATCTAGAGACTAG

mRNA sequence

ATGGACACGAATAAGCCCACGAATGAGGGCATGCCGACAAGGAGGGAGGAGGAGGAGCGATGTGGACCCTTAGACTTTGACCAGAGGGATGGAGTCAATGTTGCACCGAGTGTATACTCCTACCTGCGGAGCATTGATAGTTTTGTATCAAAGTTGGAGGGTCGTGTATCAAAGGTCGATGAAGACCTAAGTTACGTGAAAGTACAACTGACGACCATTACATCATTGTTACAGTCTTTGATTAAGGATCCCACCATGGTAGATTCGAGGAAGTCCCCCAAGCCCACCGCAAGACTCGGGTTCGAGGAGATCACCCGCCCCACCCTGCGATCTAGAGACTAG

Coding sequence (CDS)

ATGGACACGAATAAGCCCACGAATGAGGGCATGCCGACAAGGAGGGAGGAGGAGGAGCGATGTGGACCCTTAGACTTTGACCAGAGGGATGGAGTCAATGTTGCACCGAGTGTATACTCCTACCTGCGGAGCATTGATAGTTTTGTATCAAAGTTGGAGGGTCGTGTATCAAAGGTCGATGAAGACCTAAGTTACGTGAAAGTACAACTGACGACCATTACATCATTGTTACAGTCTTTGATTAAGGATCCCACCATGGTAGATTCGAGGAAGTCCCCCAAGCCCACCGCAAGACTCGGGTTCGAGGAGATCACCCGCCCCACCCTGCGATCTAGAGACTAG

Protein sequence

MDTNKPTNEGMPTRREEEERCGPLDFDQRDGVNVAPSVYSYLRSIDSFVSKLEGRVSKVDEDLSYVKVQLTTITSLLQSLIKDPTMVDSRKSPKPTARLGFEEITRPTLRSRD
Homology
BLAST of Lsi03G006670 vs. NCBI nr
Match: XP_038892557.1 (uncharacterized protein LOC120081601 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 13  TRREEEERCGPLDFDQRDGVNVAPSVYSYLRSIDSFVSKLEG-------RVSKVDEDLSY 72
           T R  +E C      +R+G N   S YSYLRSIDS +S+L+G       RVS ++E+++ 
Sbjct: 94  TERPVDEECPECAVRRREGANADESTYSYLRSIDSALSRLDGCISGLDSRVSIMEENMTE 153

Query: 73  VKVQLTTITSLLQSLIKDPTM-VDSRKSPKPT 97
           +K QL+ I SLLQS+ K  T+  +  +SP P+
Sbjct: 154 MKGQLSAILSLLQSMHKGSTVNEEMTRSPIPS 185

BLAST of Lsi03G006670 vs. NCBI nr
Match: XP_038875137.1 (uncharacterized protein LOC120067672 [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-05
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 2   DTNKPTNEGMPTRREE--EERCGPLDFDQRDGVNVAPSVYSYLRSIDSFVSKLEGRVSKV 61
           ++N P    + + RE   +E C P     R+GVN   S+YSYLR+IDS +S+L+GR+S +
Sbjct: 160 ESNPPNVHLVDSHRERSMDEEC-PECAAHREGVNPDDSIYSYLRTIDSSLSRLDGRISSL 219

Query: 62  D-------EDLSYVKVQLTTITSLLQSLIKDPTMVDSRKSPKP 96
           D       E+++ +K QL+TI SLLQS+ K   +      P P
Sbjct: 220 DSRVSNMEENMTDMKGQLSTILSLLQSMCKSLKIPPLHLLPTP 261

BLAST of Lsi03G006670 vs. NCBI nr
Match: XP_038896435.1 (uncharacterized protein LOC120084697 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 13  TRREEEERCGPLDFDQRDGVNVAPSVYSYLRSIDSFVSKLEGRVSKVD-------EDLSY 72
           T+R  +E C      +R   N   S YSYLRSIDS +S+L+G +S +D       E+++ 
Sbjct: 23  TKRLVDEECSKYTARRRKEANADESTYSYLRSIDSALSRLDGHISDLDIRVFSMEENMTD 82

Query: 73  VKVQLTTITSLLQSLIKDPTM-VDSRKSPKPTARL 100
           +K QL+ I SLLQS+ K  T+  ++ +SP P+  L
Sbjct: 83  MKGQLSAILSLLQSMHKGSTVNEETTRSPIPSREL 117

BLAST of Lsi03G006670 vs. NCBI nr
Match: XP_038884017.1 (uncharacterized protein LOC120074969 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 9.4e-05
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 28  QRDGVNVAPSVYSYLRSIDSFVSKLEG-------RVSKVDEDLSYVKVQLTTITSLLQSL 87
           +R G N+   +Y YLRSID+ +S+L+G       RVSK++E++  +K QL+TI SLLQS+
Sbjct: 32  RRKGANLNDYIYLYLRSIDNSLSRLDGHISSLDSRVSKIEENMIDMKAQLSTIQSLLQSM 91

Query: 88  IKDPTMVDS-RKSPKP 96
            K   ++D   +SP P
Sbjct: 92  CKGSMVIDEMTRSPIP 107

BLAST of Lsi03G006670 vs. NCBI nr
Match: XP_038906048.1 (uncharacterized protein LOC120091949 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 18  EERCGPLDFDQRDGVNVAPSVYSYLRSIDSFVSKLEGRVSKVD-------EDLSYVKVQL 77
           +E C P     R+G N   S+YSY+R+IDS +S+L+GR+S +D       E+++ +K QL
Sbjct: 129 DEEC-PECAAHREGTNPNDSIYSYIRTIDSSLSRLDGRISSLDSRVSNMEENMTNMKGQL 188

Query: 78  TTITSLLQSLIKDPTM 87
           + I SLLQS+ K  T+
Sbjct: 189 SVILSLLQSMCKGSTV 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038892557.11.4e-0541.30uncharacterized protein LOC120081601 [Benincasa hispida][more]
XP_038875137.13.2e-0538.83uncharacterized protein LOC120067672 [Benincasa hispida][more]
XP_038896435.15.5e-0538.95uncharacterized protein LOC120084697 [Benincasa hispida][more]
XP_038884017.19.4e-0543.42uncharacterized protein LOC120074969 [Benincasa hispida][more]
XP_038906048.12.7e-0442.11uncharacterized protein LOC120091949 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G006670.1Lsi03G006670.1mRNA