Lsi03G006140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G006140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpathogenesis-related protein 1C-like isoform X1
Locationchr03: 7677293 .. 7677814 (+)
RNA-Seq ExpressionLsi03G006140
SyntenyLsi03G006140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCCTCAAGCTCTCCCTTTCTCTCCTTTGTGTCTTGAGTACTTTCATCTTGTTCACCTCATCCATCGCTCAAGACTCACCTAAGACTTCGTCGACGCCCACAACGATGCTCGTGCCCAGGTTGGCGTTGGACTTGTCTAGTGGGATGAAAACGTGGCAAACTACACTCAACAGTATGCCAACCAAGAAATCAACGAATGCCAAATGGTGCACTCTAATGGGCCTTATGGGGAGAATCTTGCTTGGAGCTCAGCTGACTTGTCAGGCACTGATGCAGTTCAAATGTGGGTGGACGAGAAACAATTTTATGATTACGGGTCAAACTCGTGCATTGGCAATGAGTGTCGCCACTACACTCAGGTGGTCTGGAAAAATTCCGTAAGAATTGGATGTGCAAAAGTTAGATGCAACAAAGGCGGTACCTTCATCACTTGCAACTATGACCCTAGAGGCAATTATGCAGACCAACGACCATACTAAGAGGGCTTTCCCTGAAGTTACGTTGAAGAGTCCATAA

mRNA sequence

ATGGCTCTCCTCAAGCTCTCCCTTTCTCTCCTTTGTGTCTTGAGTACTTTCATCTTGTTCACCTCATCCATCGCTCAAGACTCACCTAAGACTTCGTCGACGCCCACAACGATGCTCGTGCCCAGGTTGGCGTTGGACTTGTCTAGTGGGATGAAAACGTGGCAAACTACACTCAACAGTATGCCAACCAAGAAATCAACGAATGCCAAATGGTGCACTCTAATGGGCCTTATGGGGAGAATCTTGCTTGGAGCTCAGCTGACTTGTCAGGCACTGATGCAGTTCAAATATGCAACAAAGGCGGTACCTTCATCACTTGCAACTATGACCCTAGAGGCAATTATGCAGACCAACGACCATACTAAGAGGGCTTTCCCTGAAGTTACGTTGAAGAGTCCATAA

Coding sequence (CDS)

ATGGCTCTCCTCAAGCTCTCCCTTTCTCTCCTTTGTGTCTTGAGTACTTTCATCTTGTTCACCTCATCCATCGCTCAAGACTCACCTAAGACTTCGTCGACGCCCACAACGATGCTCGTGCCCAGGTTGGCGTTGGACTTGTCTAGTGGGATGAAAACGTGGCAAACTACACTCAACAGTATGCCAACCAAGAAATCAACGAATGCCAAATGGTGCACTCTAATGGGCCTTATGGGGAGAATCTTGCTTGGAGCTCAGCTGACTTGTCAGGCACTGATGCAGTTCAAATATGCAACAAAGGCGGTACCTTCATCACTTGCAACTATGACCCTAGAGGCAATTATGCAGACCAACGACCATACTAAGAGGGCTTTCCCTGAAGTTACGTTGAAGAGTCCATAA

Protein sequence

MALLKLSLSLLCVLSTFILFTSSIAQDSPKTSSTPTTMLVPRLALDLSSGMKTWQTTLNSMPTKKSTNAKWCTLMGLMGRILLGAQLTCQALMQFKYATKAVPSSLATMTLEAIMQTNDHTKRAFPEVTLKSP
Homology
[Close]
BLAST of Lsi03G006140 vs. ExPASy TrEMBL
Match: A0A6J1JLM6 (pathogenesis-related protein 1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485526 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 32 SSTPTTMLVPRLALDLSSGMKTWQTTLNSMPTKKSTNAKWCTLMGLMGRI 82
          +S PTT+LVP+L L LS+GM++WQTT N+M    S  A WCT +GLMGRI
Sbjct: 47 TSMPTTLLVPKLVLVLSNGMRSWQTTPNNMSMNASMTANWCTPVGLMGRI 96

[Close]
BLAST of Lsi03G006140 vs. NCBI nr
Match: XP_022988223.1 (pathogenesis-related protein 1C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-06
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 32 SSTPTTMLVPRLALDLSSGMKTWQTTLNSMPTKKSTNAKWCTLMGLMGRI 82
          +S PTT+LVP+L L LS+GM++WQTT N+M    S  A WCT +GLMGRI
Sbjct: 47 TSMPTTLLVPKLVLVLSNGMRSWQTTPNNMSMNASMTANWCTPVGLMGRI 96

The following BLAST results are available for this feature:
BLAST of Lsi03G006140 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G006140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JLM62.2e-0660.00pathogenesis-related protein 1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Lsi03G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988223.14.5e-0660.00pathogenesis-related protein 1C-like isoform X1 [Cucurbita maxima][more]
BLAST of Lsi03G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G006140.1Lsi03G006140.1mRNA