Lsi03G005640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G005640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-type domain-containing protein
Location	chr03: 6818230 .. 6821081 (-)
RNA-Seq Expression	Lsi03G005640
Synteny	Lsi03G005640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGCTCCAAGCTCTAAAATTATTACAACACAAAATAAATAAAAAGATAAAGATAAGAACAACCAATTCATTTGTTAAGTTCCCTAATTCCAACCCAATCCAATCCAATCCACGCTCGAGTTTTTCTGTTAGCGCAAGTAAGTAACCAAGCAAATCCCCTCCTTTACCTTCAACTTCCATCCACATTTCTCCGAAATTTCTTCCCCATTTCTTCCCAGTTTCAAACCCTTTTCCATTTTTCCTTTATTAATTTCAGATTGTACGCAAAATTTGAGTTAAACAAACTTTAGGACCGGCTAAGCCCGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTGTAAGGAAGGATTAAACATTTTTTTTTTTATCAAATTCTGGGTTTGTGTTATTTGAGAAATTGCTATTTACTTCGATGAAGTCTATATTAACGGCTGAGAATAGTTGGAGTTGGAAGAACTGTTCATATTTTGTTTTGATTGGGAATTTCTTAGCGTTTCTGACCAAAAATTTCTTCTAAACTGTAGAACCAGTTGGGGATATGTTGAAAAGATATTATTTGCCCTAATTTATCAGCTTAGGTTGTTGGGAATTGGGATGGTTTTATATGGTTCATGCCCTAAGAATAATGTCTTTTGCACTTAACTATGGATTGATCCAACAAATAACTCTAGTCCACCTAGGTCTGCTCCATAAATGTTTGGTTTTTGGTTTTTGAAAATTAAACCTTGTAAAGGCTGTTTCTAAGTTCCAAATATGAACTTTGTTTTGTTAATGTTTTGAAAATCCAAGCTTTAAAGAAAAAAATAGTTTCTAGAAGCTTGTTTTTGTTTCTAAAATTTAGCTATAGATTCAAATGTTTTCTTATGAAAGATGAAAACTATTGGAAAGAAATCGTGAGAAAACAAGTGCAATTTTCAAAAACTAAATGGTTATCAAACAGATTTCTAGCTAAGCTATTGGTTTAGTGATTGTTGTTATTCTTCAGTGATAATTCTGTTTTCCATTGCTATGAACTACTTAGAACCATAATAAATCAAATTGCAGAACTTGGTACGGAGAGTGATGATGAATAGAACTTTTCCAGTTTTATTAGCTTCTTAATGCTACTTGGCTATTAAACCATGATCTAATTGGTATGTGATCATGGAGACATAACTTGGTTACAACTTACAATTAAGGATGCTTTTCTATATTTCTTTTCTGGGTTGTCATCTCTGTCTGAATGTTAAATTCAATTACTTTGGAGGCATTAACACTGTGTCTTCATTGTAGCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGTTAGTTCCTATTGTCGTGTACTTGTTGTTTACACTACTATGCAGAAAAATTTGGGACTTCAATTGGAATATTCCATGTCATTTCTCTAAAGACATCTTTCTAGATTTAAAGGCATATTTGGAAGTGATTTTAAAATCATTATAATCACTTTTGTCAGGTTCAATATCACTTTAAAACATGTCTTTAATTATACAAAATCAATGTAATGTTTGATTTGACACTTTTAAACGTGATTTTCATAAAAATCAAAGTTGATTTTGAATCATTAAAAGAACACTTGTAAACATATGCTGTGGTATGTATCTACTTGTATGATTTTCTTTGTTGATAGGGAGTTGGTTGTATTGTATACTCAGAAAATAGAATCCAATTCCAATAAACTCAAAGTTTCTACAAGTTATGTCCTAGATTTTAGCGTTCTTTATAAACTATATTTATGGATAGCAAATTGGAATTGAAAATTGTTACTAGTTGGCCATCTGTATATTGAAAACTGGAATAGATCCCAGCTCTGTGCTACTGCTAACCGAATTAGTTTATTCATCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTTTCGCAACTTGGGATTTTCCTGTATGTGTAAAAAGCTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATAGTTATAGTTGATGTTTATACTTGTATCCTTCTAAGTGACTGCGTTGACTCCAAATTGTGAGGCTTTTTTTACTAGCCAAGAGGTTTGACTGCTTTGTAACTCTTCTTTTTATTGGTTTTAGTTGAGAAAAAGGACACTGATTTTTTAATATAAAGAATGAGGAAGCTGTTCCAAAATACTACCATTCATTTTG

mRNA sequence

CTTAGCTCCAAGCTCTAAAATTATTACAACACAAAATAAATAAAAAGATAAAGATAAGAACAACCAATTCATTTGTTAAGTTCCCTAATTCCAACCCAATCCAATCCAATCCACGCTCGAGTTTTTCTGTTAGCGCAAATTGTACGCAAAATTTGAGTTAAACAAACTTTAGGACCGGCTAAGCCCGTGCATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAATCTTTTCTAACCCGTTTTCGCAACTTGGGATTTTCCTGTATGTGTAAAAAGCTTAGAGACTGTCAATTATTCCAAGTTGTGGTATTAATCTTTATAGTTATAGTTGATGTTTATACTTGTATCCTTCTAAGTGACTGCGTTGACTCCAAATTGTGAGGCTTTTTTTACTAGCCAAGAGGTTTGACTGCTTTGTAACTCTTCTTTTTATTGGTTTTAGTTGAGAAAAAGGACACTGATTTTTTAATATAAAGAATGAGGAAGCTGTTCCAAAATACTACCATTCATTTTG

Coding sequence (CDS)

ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAA

Protein sequence

MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSSLQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN

Homology

[Close]

BLAST of Lsi03G005640 vs. ExPASy Swiss-Prot
Match: Q852U6 (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.0e-37
Identity = 101/255 (39.61%), Postives = 137/255 (53.73%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  R HG H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSVTS-VGSRNNINANTQNSLRTGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPG 180
           LAR+RL ERLRG S  ++  +     D   E S        +     +++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           L+QDAIN L    F         + +  +DCSICLESFT GD LI LPC H FH +CL+ 
Sbjct: 181 LTQDAINCLHRQTF-----SSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNP 240

Query: 241 WIRTCGECPYCRQHI 254
           W+R CG+CP CR+ I
Sbjct: 241 WLRACGDCPCCRRAI 247

[Close]

BLAST of Lsi03G005640 vs. ExPASy Swiss-Prot
Match: A5WWA0 (E3 ubiquitin-protein ligase znrf3 OS=Danio rerio OX=7955 GN=znrf3 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 197 NDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           +D V+ ++TS DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 256 SDSVSSSSTS-DCAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCPHCRHNII 312

[Close]

BLAST of Lsi03G005640 vs. ExPASy Swiss-Prot
Match: Q9ULT6 (E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens OX=9606 GN=ZNRF3 PE=1 SV=3)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 283 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNII 338

[Close]

BLAST of Lsi03G005640 vs. ExPASy Swiss-Prot
Match: Q07G42 (E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-10
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 175 RPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHA 234
           +P GL+++ I+ L    F    ND +      K CS+C+  +T+G+KL  LPC H++H  
Sbjct: 559 QPRGLTKEQIDNLSTRNFGE--NDAL------KTCSVCITEYTEGNKLRKLPCSHEYHVH 618

Query: 235 CLDRWIRTCGECPYCRQHIVV 256
           C+DRW+     CP CR+ ++V
Sbjct: 619 CIDRWLSENSTCPICRRAVLV 631

[Close]

BLAST of Lsi03G005640 vs. ExPASy Swiss-Prot
Match: Q08D68 (E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis OX=8364 GN=znrf3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.8e-10
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 199 DVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIV 255
           D   ++++ DC+ICLE + DG++L  +PC H+FH  C+D W+     CP+CR +I+
Sbjct: 256 DTLSSSSTSDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNII 311

[Close]

BLAST of Lsi03G005640 vs. ExPASy TrEMBL
Match: A0A5A7SMR0 (E3 ubiquitin-protein ligase RLIM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001110 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.0e-126
Identity = 232/256 (90.62%), Postives = 240/256 (93.75%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSVGSRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVE S+G+PEISTSRSQRISL+D DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   II+DDV MT TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 254
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]

BLAST of Lsi03G005640 vs. ExPASy TrEMBL
Match: A0A0A0K6D2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.0e-126
Identity = 231/259 (89.19%), Postives = 239/259 (92.28%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSV SRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVE S+G+PE +TSRSQRISLVD DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   IIND V MT TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of Lsi03G005640 vs. ExPASy TrEMBL
Match: A0A1S3C156 (E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 9.0e-126
Identity = 232/256 (90.62%), Postives = 240/256 (93.75%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSVGSRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVE S+G+PEISTSRSQRISL+D DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   II+DDV MT TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 254
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]

BLAST of Lsi03G005640 vs. ExPASy TrEMBL
Match: A0A6J1JIJ3 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita maxima OX=3661 GN=LOC111486117 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.8e-117
Identity = 219/259 (84.56%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELFH RRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRR LN+CGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQER QSPRF NPL+VDRSPAQS+S  SVGSRNNINAN QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERHQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERL ERLRGASSPT RN LVE  D SPEIS SRSQ ISL D DR+RLVPA SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLVVFI---NIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
            +AIN LQL  FI   +II+DD+TMTTTS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 LEAINCLQLERFIDIEHIIDDDLTMTTTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
            WIRTCGECPYCRQHIVVN
Sbjct: 241 PWIRTCGECPYCRQHIVVN 259

[Close]

BLAST of Lsi03G005640 vs. ExPASy TrEMBL
Match: A0A6J1EQ66 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC111434663 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 9.3e-115
Identity = 215/260 (82.69%), Postives = 230/260 (88.46%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELFH RRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRR LN+CGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRF +PL+VDRSPAQS+S  SVGSRNNI+AN QNSLR GL+GDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFLDPLAVDRSPAQSESGISVGSRNNISANIQNSLRPGLNGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERL ERLRGASSPT RN LVE  D SPEIS SRSQ ISL D DR+RLVPA SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLVVFI----NIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACL 240
           Q+AIN LQL  FI    +II+DD+TM  TS DCSICL+SF DGDKLIHLPC+HKFHHACL
Sbjct: 181 QEAINCLQLERFIDIEQHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACL 240

Query: 241 DRWIRTCGECPYCRQHIVVN 257
           ++WIRTCGECPYCRQ IVVN
Sbjct: 241 EQWIRTCGECPYCRQRIVVN 260

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: XP_038888994.1 (probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida])

HSP 1 Score: 460.7 bits (1184), Expect = 8.3e-126
Identity = 231/259 (89.19%), Postives = 240/259 (92.66%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+ RRYRLGRTDADLGLDSEPPDR+LQYQRRHHGHN NHRRD NSCG FRRSS
Sbjct: 1   MTSASELFYSRRYRLGRTDADLGLDSEPPDRYLQYQRRHHGHNANHRRDFNSCGTFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDR P QSDSVTS GSRNNIN NTQNSLRTGLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRLPTQSDSVTSDGSRNNINPNTQNSLRTGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSP SRNALVE  DGSPEIST+RSQRISLVD DRM+LVPAPSKRPPGLS
Sbjct: 121 RERLLERLRGASSPRSRNALVEALDGSPEISTNRSQRISLVDADRMQLVPAPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAI+RLQL VFIN   II+DDVT TTTS +CSICLESFTDGD LIHLPCEHKFHHACLD
Sbjct: 181 QDAIDRLQLEVFINTEHIIDDDVTTTTTSNECSICLESFTDGDVLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQH+V+N
Sbjct: 241 RWIRTCGECPYCRQHVVIN 259

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: XP_004136947.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucumis sativus] >KGN43862.1 hypothetical protein Csa_017364 [Cucumis sativus])

HSP 1 Score: 459.5 bits (1181), Expect = 1.9e-125
Identity = 231/259 (89.19%), Postives = 239/259 (92.28%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSV SRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVASRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPT+RNALVE S+G+PE +TSRSQRISLVD DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTTRNALVEASNGNPETTTSRSQRISLVDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   IIND V MT TS DCSICLESFTDGDKLIHLPCEHKFHH CLD
Sbjct: 181 QDAINRLQLEVFINTDHIINDGV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHPCLD 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           RWIRTCGECPYCRQHI +N
Sbjct: 241 RWIRTCGECPYCRQHIAIN 258

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: XP_008455026.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo] >KAA0031356.1 E3 ubiquitin-protein ligase RLIM [Cucumis melo var. makuwa] >TYK06808.1 E3 ubiquitin-protein ligase RLIM [Cucumis melo var. makuwa])

HSP 1 Score: 459.5 bits (1181), Expect = 1.9e-125
Identity = 232/256 (90.62%), Postives = 240/256 (93.75%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELF+CRRYR GRTD+DLGLDSEPPDR+LQYQRRHHGHN NHRRDLNSCG FRRSS
Sbjct: 1   MTSASELFYCRRYRFGRTDSDLGLDSEPPDRNLQYQRRHHGHNANHRRDLNSCGDFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRFFNPLSVDRSPAQSDS TSVGSRNNIN NTQNSLR+GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFFNPLSVDRSPAQSDSATSVGSRNNINGNTQNSLRSGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERLLERLRGASSPTSRNALVE S+G+PEISTSRSQRISL+D DRMRLV  PSKRPPGLS
Sbjct: 121 RERLLERLRGASSPTSRNALVEASNGNPEISTSRSQRISLIDADRMRLVAVPSKRPPGLS 180

Query: 181 QDAINRLQLVVFIN---IINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           QDAINRLQL VFIN   II+DDV MT TS DCSICLESFTDGDKLIHLPCEHKFHHACLD
Sbjct: 181 QDAINRLQLEVFINTDRIIDDDV-MTITSTDCSICLESFTDGDKLIHLPCEHKFHHACLD 240

Query: 241 RWIRTCGECPYCRQHI 254
           RWIRTCGECPYCRQHI
Sbjct: 241 RWIRTCGECPYCRQHI 255

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: XP_022988901.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima])

HSP 1 Score: 430.3 bits (1105), Expect = 1.2e-116
Identity = 219/259 (84.56%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELFH RRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRR LN+CGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQER QSPRF NPL+VDRSPAQS+S  SVGSRNNINAN QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERHQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERL ERLRGASSPT RN LVE  D SPEIS SRSQ ISL D DR+RLVPA SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLVVFI---NIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
            +AIN LQL  FI   +II+DD+TMTTTS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 LEAINCLQLERFIDIEHIIDDDLTMTTTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
            WIRTCGECPYCRQHIVVN
Sbjct: 241 PWIRTCGECPYCRQHIVVN 259

[Close]

BLAST of Lsi03G005640 vs. NCBI nr
Match: XP_023529438.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428.3 bits (1100), Expect = 4.6e-116
Identity = 218/259 (84.17%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSS 60
           MTSASELFH RRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRR LN+CGAFRRSS
Sbjct: 1   MTSASELFHSRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRVLNACGAFRRSS 60

Query: 61  LQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLA 120
           LQERRQSPRF NPL+VDRSPAQS+S  SVGSRNNINAN QNSLR GLSGDSRLPGSVLLA
Sbjct: 61  LQERRQSPRFLNPLAVDRSPAQSESGISVGSRNNINANIQNSLRPGLSGDSRLPGSVLLA 120

Query: 121 RERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLS 180
           RERL ERLRGASSPT RN LVE  D SPEIS SRSQ ISL D DR+RLVPA SKRPPGLS
Sbjct: 121 RERLFERLRGASSPTIRNGLVEALDWSPEISASRSQMISLEDADRLRLVPAVSKRPPGLS 180

Query: 181 QDAINRLQLVVFI---NIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 240
           Q+AIN LQL  FI   +II+DD+TM  TS DCSICL+SF DGDKLIHLPC+HKFHHACL+
Sbjct: 181 QEAINCLQLERFIDIEHIIDDDLTMIRTSNDCSICLDSFIDGDKLIHLPCKHKFHHACLE 240

Query: 241 RWIRTCGECPYCRQHIVVN 257
           +WIRTCGECPYCRQ IVVN
Sbjct: 241 QWIRTCGECPYCRQRIVVN 259

[Close]

BLAST of Lsi03G005640 vs. TAIR 10
Match: AT1G49850.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-38
Identity = 101/255 (39.61%), Postives = 137/255 (53.73%), Query Frame = 0


Query: 1   MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHG-HNGNHRRDLNSCGAFRRS 60
           MTSASELF  RR R GR+D  L  D+     H  +  R HG H+ N R D + C   RR 
Sbjct: 1   MTSASELFSTRRSRPGRSDPALESDTSSYRHHSHHHHRRHGVHHHNQRHDSDGCDPLRRP 60

Query: 61  SLQERRQSPRFFNPLSVDRSPAQSDSVTS-VGSRNNINANTQNSLRTGLSGDSRLPGSVL 120
           + + RR    F +P+     P +    TS   + ++ +  TQ+S    L+G  RLPG+VL
Sbjct: 61  TPRLRR---FFHHPIQERSRPIRDVQGTSQYLNTDSTDTETQSSSFVNLNGSERLPGAVL 120

Query: 121 LARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPG 180
           LAR+RL ERLRG S  ++  +     D   E S        +     +++    +K+P G
Sbjct: 121 LARDRLFERLRGVSLSSNSRSNRVSLDDQRESSFHSIDGDPIFQLAGLQVTYECNKKPQG 180

Query: 181 LSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDR 240
           L+QDAIN L    F         + +  +DCSICLESFT GD LI LPC H FH +CL+ 
Sbjct: 181 LTQDAINCLHRQTF-----SSAEVKSEMRDCSICLESFTKGDMLISLPCTHSFHSSCLNP 240

Query: 241 WIRTCGECPYCRQHI 254
           W+R CG+CP CR+ I
Sbjct: 241 WLRACGDCPCCRRAI 247

[Close]

BLAST of Lsi03G005640 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-11
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 207 KDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHI 254
           +DC+ICL+ F  G+ L+HLPC HKFH  CL  W+ T   CPYCR  I
Sbjct: 148 QDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

[Close]

BLAST of Lsi03G005640 vs. TAIR 10
Match: AT1G71980.1 (Protease-associated (PA) RING/U-box zinc finger family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-10
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLD 237
           G+S+  +  +  ++F +   D+    TT+  C+ICLE +T GDKL  LPC HKFH AC+D
Sbjct: 205 GMSRRLVKAMPSLIFSSFHEDN----TTAFTCAICLEDYTVGDKLRLLPCCHKFHAACVD 264

Query: 238 RWIRTCGE-CPYCRQ 252
            W+ +    CP C++
Sbjct: 265 SWLTSWRTFCPVCKR 275

[Close]

BLAST of Lsi03G005640 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-10
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKD---CSICLESFTDGDKLIHLP-CEHKFHH 237
           GL+ D++NR+            V +T TS +   CS+CL+ F  G+ +  LP C H FH 
Sbjct: 152 GLTGDSLNRI----------PKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHL 211

Query: 238 ACLDRWIRTCGECPYCRQHI 254
            C+D+W+R    CP CR+H+
Sbjct: 212 PCIDKWLRRHASCPLCRRHL 221

[Close]

BLAST of Lsi03G005640 vs. TAIR 10
Match: AT5G66070.2 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-10
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 178 GLSQDAINRLQLVVFINIINDDVTMTTTSKD---CSICLESFTDGDKLIHLP-CEHKFHH 237
           GL+ D++NR+            V +T TS +   CS+CL+ F  G+ +  LP C H FH 
Sbjct: 176 GLTGDSLNRI----------PKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHL 235

Query: 238 ACLDRWIRTCGECPYCRQHI 254
            C+D+W+R    CP CR+H+
Sbjct: 236 PCIDKWLRRHASCPLCRRHL 245

The following BLAST results are available for this feature:

BLAST of Lsi03G005640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q852U6	2.0e-37	39.61	Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
A5WWA0	6.0e-10	44.83	E3 ubiquitin-protein ligase znrf3 OS=Danio rerio OX=7955 GN=znrf3 PE=1 SV=2	[more]
Q9ULT6	6.0e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens OX=9606 GN=ZNRF3 PE=1 SV=3	[more]
Q07G42	7.8e-10	37.04	E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis OX=8364 GN=rnf12 PE=2 SV...	[more]
Q08D68	7.8e-10	41.07	E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis OX=8364 GN=znrf3 PE=1 SV...	[more]

BLAST of Lsi03G005640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMR0	9.0e-126	90.63	E3 ubiquitin-protein ligase RLIM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0K6D2	9.0e-126	89.19	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071510 P...	[more]
A0A1S3C156	9.0e-126	90.63	E3 ubiquitin-protein ligase RLIM OS=Cucumis melo OX=3656 GN=LOC103495299 PE=4 SV...	[more]
A0A6J1JIJ3	5.8e-117	84.56	probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EQ66	9.3e-115	82.69	probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Lsi03G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888994.1	8.3e-126	89.19	probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida]	[more]
XP_004136947.1	1.9e-125	89.19	probable E3 ubiquitin-protein ligase RHY1A [Cucumis sativus] >KGN43862.1 hypothe...	[more]
XP_008455026.1	1.9e-125	90.63	PREDICTED: E3 ubiquitin-protein ligase RLIM [Cucumis melo] >KAA0031356.1 E3 ubiq...	[more]
XP_022988901.1	1.2e-116	84.56	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita maxima]	[more]
XP_023529438.1	4.6e-116	84.17	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G005640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49850.1	1.4e-38	39.61	RING/U-box superfamily protein	[more]
AT2G15580.1	3.3e-11	55.32	RING/U-box superfamily protein	[more]
AT1G71980.1	2.8e-10	40.00	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT5G66070.1	8.0e-10	37.50	RING/U-box superfamily protein	[more]
AT5G66070.2	8.0e-10	37.50	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 209..249 e-value: 1.3E-5 score: 34.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 208..250 e-value: 1.9E-13 score: 50.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 209..250 score: 13.020386
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 169..254 e-value: 2.8E-20 score: 73.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..112
None	No IPR available	PANTHER	PTHR45931:SF10	E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED	coord: 155..255
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 155..255
None	No IPR available	PANTHER	PTHR45931:SF10	E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED	coord: 1..137
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 1..137
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 208..250 e-value: 2.76137E-16 score: 68.8677
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 208..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005640.1	Lsi03G005640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity