Lsi03G005560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G005560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PUM-HD domain-containing protein
Location	chr03: 6731978 .. 6732800 (+)
RNA-Seq Expression	Lsi03G005560
Synteny	Lsi03G005560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTAATTACTTAACTTGCACAAAATTGCTCAGAGCTAGCAACAGATAAAACTCGTTGTTGTATACTTCAATCGTGTATTGAATATTCCTATAATAATATAGGACGACATCAAGAAGTTCTAATCTCTCGGTTGATACAAGATGCATACAATCTCTCAATGCATCCCTCTACGGGCAATTTTCATTTTATTATGCATATATTATTATAAGCTTGTATGATTGTATGATTATATATATTAATTGTTAATTACAGGAACTATGTAATACAATTTATGATTCAATTGGATGGAGCAAATATAGGATGGATGATAATCAATGAGCTTGAAACAAATTTGTAACACTTTTTGTAGACAAGTTTGAAAGCAATGTGGTGGAAAAATGCATGTCTTGTTGTGAAGGTGGTTCTGATTACATTATCTTTGAAATTTTAGAGAATAATAATCAAGATCAACTCTTTCAAGTTTGTACAAACCAATATGGTAATTATGTTATCAGACAGCTATGTTCGTTATTAAGGTTCGACATAAATATCATATAATTGTCATTAGTTCCTAACAATGTATTATTTTGTCATTGCAGGAGAAGCTTATAGGTTACTTGAAAGAGCCATTAAGAATCATTGGCTTGATCTTCAAACTCATCCGTACAAAAGAAATGTGATTTCATCAATCAAACATGATAAAAAGAGTCAAAATTACAAGAGTTTTAAATTAAAATTGGTATATTTTCAAGGGCATTCTATATCATTTGTTTTATCTAGGTTTTTTTTAAGGTTGTTTGGGATATGGAGCAAACAAACCGCATTAGGAACATTAGGAAC

mRNA sequence

ATGAGGACGACATCAAGAAGTTCTAATCTCTCGGTTGATACAAGATGCATACAATCTCTCAATGCATCCCTCTACGGGCAATTTTCATTTTATTATGCATATATTATTATAAGCTTGAACTATGTAATACAATTTATGATTCAATTGGATGGAGCAAATATAGGATGGATGATAATCAATGAGCTTGAAACAAATTTCAATGTGGTGGAAAAATGCATGTCTTGTTGTGAAGGTGGTTCTGATTACATTATCTTTGAAATTTTAGAGAATAATAATCAAGATCAACTCTTTCAAGTTTGTACAAACCAATATGGAGAAGCTTATAGGTTACTTGAAAGAGCCATTAAGAATCATTGGCTTGATCTTCAAACTCATCCGTACAAAAGAAATGTGATTTCATCAATCAAACATGATAAAAAGAGTCAAAATTACAAGAGTTTTAAATTAAAATTGGTTGTTTGGGATATGGAGCAAACAAACCGCATTAGGAACATTAGGAAC

Coding sequence (CDS)

ATGAGGACGACATCAAGAAGTTCTAATCTCTCGGTTGATACAAGATGCATACAATCTCTCAATGCATCCCTCTACGGGCAATTTTCATTTTATTATGCATATATTATTATAAGCTTGAACTATGTAATACAATTTATGATTCAATTGGATGGAGCAAATATAGGATGGATGATAATCAATGAGCTTGAAACAAATTTCAATGTGGTGGAAAAATGCATGTCTTGTTGTGAAGGTGGTTCTGATTACATTATCTTTGAAATTTTAGAGAATAATAATCAAGATCAACTCTTTCAAGTTTGTACAAACCAATATGGAGAAGCTTATAGGTTACTTGAAAGAGCCATTAAGAATCATTGGCTTGATCTTCAAACTCATCCGTACAAAAGAAATGTGATTTCATCAATCAAACATGATAAAAAGAGTCAAAATTACAAGAGTTTTAAATTAAAATTGGTTGTTTGGGATATGGAGCAAACAAACCGCATTAGGAACATTAGGAAC

Protein sequence

MRTTSRSSNLSVDTRCIQSLNASLYGQFSFYYAYIIISLNYVIQFMIQLDGANIGWMIINELETNFNVVEKCMSCCEGGSDYIIFEILENNNQDQLFQVCTNQYGEAYRLLERAIKNHWLDLQTHPYKRNVISSIKHDKKSQNYKSFKLKLVVWDMEQTNRIRNIRN

Homology

[Close]

BLAST of Lsi03G005560 vs. ExPASy TrEMBL
Match: A0A0A0K7S4 (PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 72/131 (54.96%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 40  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILE 99
           NYVIQFMIQLDG NIG  II EL   F          NVVEKC+SCCEG S+ IIFEILE
Sbjct: 61  NYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILE 120

Query: 100 NNNQDQLFQVCTNQY-------------GEAYRLLERAIKNHWLDLQTHPYKRNVISSIK 148
            N +D+L Q+CTNQY             G+  +LLE+AIK+HWL LQ H Y RNVISSI+
Sbjct: 121 GNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIR 180

[Close]

BLAST of Lsi03G005560 vs. ExPASy TrEMBL
Match: A0A6J1D5W5 (pumilio homolog 12-like OS=Momordica charantia OX=3673 GN=LOC111017335 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.3e-12
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 40  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILE 99
           N+VIQF+I+LD ANIG  +I  L   F          +VVEKC+ C E  +  IIFEI+E
Sbjct: 311 NFVIQFLIELDQANIGARVIQVLRNKFVELCLSKAGSHVVEKCLGCGEDEAAGIIFEIME 370

Query: 100 NNNQDQLFQVCTNQY-------------GEAYRLLERAIKNHWLDLQTHPYKRNVI-SSI 142
             N++   QV TNQY             GEAY LL RAIK+    L+ HPY R+V+ +++
Sbjct: 371 --NKENWIQVFTNQYGNYVAQKALSVAKGEAYNLLVRAIKSQQHILEFHPYGRSVVAAAV 430

[Close]

BLAST of Lsi03G005560 vs. NCBI nr
Match: KAE8645845.1 (hypothetical protein Csa_017253 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-26
Identity = 72/131 (54.96%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 40  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILE 99
           NYVIQFMIQLDG NIG  II EL   F          NVVEKC+SCCEG S+ IIFEILE
Sbjct: 123 NYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILE 182

Query: 100 NNNQDQLFQVCTNQY-------------GEAYRLLERAIKNHWLDLQTHPYKRNVISSIK 148
            N +D+L Q+CTNQY             G+  +LLE+AIK+HWL LQ H Y RNVISSI+
Sbjct: 183 GNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIR 242

[Close]

BLAST of Lsi03G005560 vs. NCBI nr
Match: XP_022148742.1 (pumilio homolog 12-like [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 8.9e-12
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 40  NYVIQFMIQLDGANIGWMIINELETNF----------NVVEKCMSCCEGGSDYIIFEILE 99
           N+VIQF+I+LD ANIG  +I  L   F          +VVEKC+ C E  +  IIFEI+E
Sbjct: 311 NFVIQFLIELDQANIGARVIQVLRNKFVELCLSKAGSHVVEKCLGCGEDEAAGIIFEIME 370

Query: 100 NNNQDQLFQVCTNQY-------------GEAYRLLERAIKNHWLDLQTHPYKRNVI-SSI 142
             N++   QV TNQY             GEAY LL RAIK+    L+ HPY R+V+ +++
Sbjct: 371 --NKENWIQVFTNQYGNYVAQKALSVAKGEAYNLLVRAIKSQQHILEFHPYGRSVVAAAV 430

The following BLAST results are available for this feature:

BLAST of Lsi03G005560 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G005560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S4	6.2e-27	54.96	PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4...	[more]
A0A6J1D5W5	4.3e-12	42.06	pumilio homolog 12-like OS=Momordica charantia OX=3673 GN=LOC111017335 PE=4 SV=1	[more]

BLAST of Lsi03G005560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645845.1	1.3e-26	54.96	hypothetical protein Csa_017253 [Cucumis sativus]	[more]
XP_022148742.1	8.9e-12	42.06	pumilio homolog 12-like [Momordica charantia]	[more]

BLAST of Lsi03G005560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 10..145 e-value: 1.1E-8 score: 36.4
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 40..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005560.1	Lsi03G005560.1	mRNA