Lsi03G005150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G005150
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr03: 5957663 .. 5958352 (-)
RNA-Seq ExpressionLsi03G005150
SyntenyLsi03G005150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTAGTTTTTTCTTTCTTTTAATTCACGAGAAGTTTTAATTGTTAGGGTGTGAAAGAAGGGAAATGAATGGTTCTTAATGTGTAAACAATAGACAATAGGGATAGTTTGGATGTGAAAAATATAACATGTACATGTAAAAATAGAAAGAAAAGAAAAAAGAGTATTTGGCAAATTGTTAACCCTCCATTTCAAACAATTTCCCCCTAATCGGTTCAAACTAAACTCACCTATTAGAAGGCAACAAAAAAGAATTACCTCGATATAAATAGTCACATTTCAAGTCTTTTGTCACAACAAAGCCATTGTAACTTAAAGCCCTTTATTTTGTATATCCAATTGCCCACTACAAAAAATGGTTGTTTCTAAAGAGAACATAGTTATTTTTATTGGTCTTCTTTTGTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAATCAAAGTCCTCTCGAAGATGAAGTCAATGTTGTAGATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATTATTGCAAATCTCTACAAGATTGCCAATATATGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAAGGTTAAAGGGGATAAAGATATCGTTCGTTCTCTACCATATATTGTTTAA

mRNA sequence

ATGCACATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAATCAAAGTCCTCTCGAAGATGAAGTCAATGTTGTAGATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATTATTGCAAATCTCTACAAGATTGCCAATATATGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAAGGTTAAAGGGGATAAAGATATCGTTCGTTCTCTACCATATATTGTTTAA

Coding sequence (CDS)

ATGCACATGAACTTTGTTGAAATTGCAAGTGCAATTAGATCTATCAATCAAAGTCCTCTCGAAGATGAAGTCAATGTTGTAGATAGTCCAAGAGTTCCTATAGAACTACATGATGATGCTAATCAATATGTAAGTAGAAGGAACAATCCAATTGATTATTGCAAATCTCTACAAGATTGCCAATATATGATTCATGGAGATGAAGTAAGAAATATGGTTGTTGACACCTCAAAAAAGGTTAAAGGGGATAAAGATATCGTTCGTTCTCTACCATATATTGTTTAA

Protein sequence

MHMNFVEIASAIRSINQSPLEDEVNVVDSPRVPIELHDDANQYVSRRNNPIDYCKSLQDCQYMIHGDEVRNMVVDTSKKVKGDKDIVRSLPYIV
Homology
[Close]
BLAST of Lsi03G005150 vs. ExPASy TrEMBL
Match: A0A0A0K605 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 3   MNFVEIASAIRSINQSPLEDEVNVVDSP---RVPIELHDDANQYVSRRNNPIDYCKSLQD 62
           +NFVEIASA R I +    D   VV  P    +  EL DDA +Y S  N  +  CKSL+ 
Sbjct: 19  INFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYNT-VYPCKSLRK 78

Query: 63  CQYMIHGDEVRNMV-VDTSKKVKGDKDIVRSLPYIV 95
            ++ I+GD+V N   V+TS+ VKGDKD     P+IV
Sbjct: 79  AKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005150 vs. ExPASy TrEMBL
Match: A0A0A0K3T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.9e-06
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 3   MNFVEIASAIRSINQSPLEDEVNVVDSP---RVPIELHDDANQYVSRRNNPIDYCKSLQD 62
           +NFVEIASA R I +    D   VV  P    +  EL DDA +Y S  N  +  CKSL+ 
Sbjct: 19  INFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYNT-VYPCKSLRK 78

Query: 63  CQYMIHGDEVRNMV-VDTSKKVKGDKDIVRSLPYIV 95
            ++ I+ D+V N   V+TS+ VKGDKD     P+IV
Sbjct: 79  AKHSINRDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005150 vs. NCBI nr
Match: KAE8646140.1 (hypothetical protein Csa_015664 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 0 

Query: 3   MNFVEIASAIRSINQSPLEDEVNVVDSP---RVPIELHDDANQYVSRRNNPIDYCKSLQD 62
           +NFVEIASA R I + P ED   VV  P    +  EL DDA +Y S  N  +  CKSL+ 
Sbjct: 19  INFVEIASAARPIKRRPYEDNTKVVCGPPRRSIDFELDDDAQKYASWYNT-VYPCKSLRK 78

Query: 63  CQYMIHGDEVRNMV-VDTSKKVKGDKDIVRSLPYIV 95
            ++ I+ D+V N   V+TS+ VKGDKD     P+IV
Sbjct: 79  AKHSINRDKVGNTFDVNTSQNVKGDKD-----PHIV 108

[Close]
BLAST of Lsi03G005150 vs. NCBI nr
Match: KGN44636.2 (hypothetical protein Csa_016656 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 3   MNFVEIASAIRSINQSPLEDEVNVVDSP---RVPIELHDDANQYVSRRNNPIDYCKSLQD 62
           +NFVEIASA R I +    D   VV  P    +  EL DDA +Y S  N  +  CKSL+ 
Sbjct: 19  INFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYNT-VYPCKSLRK 78

Query: 63  CQYMIHGDEVRNMV-VDTSKKVKGDKDIVRSLPYIV 95
            ++ I+GD+V N   V+TS+ VKGDKD     P+IV
Sbjct: 79  AKHSINGDKVGNTFDVNTSQNVKGDKD-----PHIV 108

The following BLAST results are available for this feature:
BLAST of Lsi03G005150 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi03G005150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6051.2e-0644.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1[more]
A0A0A0K3T59.9e-0643.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1[more]
BLAST of Lsi03G005150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646140.13.7e-0745.83hypothetical protein Csa_015664 [Cucumis sativus][more]
KGN44636.22.4e-0644.79hypothetical protein Csa_016656 [Cucumis sativus][more]
BLAST of Lsi03G005150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G005150.1Lsi03G005150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0051179 localization
cellular_component GO:0110165 cellular anatomical entity