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Lsi03G004780 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAAATCAAGTCCACAAAAAAGAAACCTCCCTCTACAAGAATAAAAGAGAAGCTTTTATTACTATCTATTTTGAAGTTGTATGTATTTTGTACAAGAACGGGATCGTGGATTTTGGTAGCAGATCTGTTGTTGTACTTGTTTTTTAACATTGTTTGATCAGATCTTTCGTTATTCCAATTTGCTTCGATTTCTAGGTTCATTGTTTAAAGAAGTCCTTGGCAAAGGTTTTATTTATGTATTTTCTTTCTTAATCACCAGCGATAATATTATACTTTCATTGATTAAAATTTTTGAACTTTCCCATTATGAATGAGAATTTGTATTAAGATTTGAAGGAGTTTGATTTGTTCAATATTTTGATTGTATTTAATTTTACAGACTAGCGGTAGCAGTTTGTATTATAAAACGGAAAAAGCAAGAAGAATAAAGATCTTTCCTTTCTAACAAAATGGTGGAGAAAGAGTGATGTCCCGGCAACGACGAACAAGGAATAACTGCCGTGCAACTTGTGGTGGGTTACCCATAAAAACCACTTTTTTTTTCCTTCACTTTTCTGTGGCCCGATCCGTCTCTCTCATTTCAATTTTCAATCAATTTTCAATCAATTTTCGTTGTTATAGAAGATTATAGATAGCGTTTGCCTTTTCCTAGTGTGATTCTCCAGAAGCCACCGCCATGGAGAATGAAGGTTCAGGAAGCGAATTCCAGGATTGGGAGGTTCTTCATGAGTATGACGAAACTTTCCTCCAAGTTAACTCCTCCAATTTTCCCGATTCGAACTCGAGGTTTTTTCAGGAAATTGAAGGCGATTCAGCCTCTGGAAGCACAATCTGGTTGGATTACTTCTCTCTTCGTAATCACGAACCGACTGCAAACACTGCCTTGAAGTCTACTCTAAGCAATGAATGTTTGGTCGAGGCAGAAAACCTCAACTCCATTGATTCTGAATCGGAGAATCGGAATTGTCACAAGAATATAAGTGAATTAGGGTCCGAGTTGGGAGACGACCTTTTGGACGAATATGAATTGAACCAATCTCATACGAACGATCTTTCAGATATTACTAAAAGCGTAACAGGTTTCGAAGAAATTTCAACCGACGCCGAGAATTTGGATAGACAGGAGGCCGATGATGGTAAATTGAAAGGCTCTCCTCTTGTTGCTACAGATGAATCGTTTTCTAGGAAGGAAATGTCTAACCCAACGGAATCCGAAGAATCTGGTGAAGAAAGTGAGAGCCAGGACGAGGTCTTGGACGACTCTTACTCTAATTCGAGTGGAAATGAGTCAGTTGCCATGAAATCTGTAGACGATGGAAAAGAGAACGATCATATAGACAGTGTAAATGAGATTTCGAACAATGATTTGGGTGGAGGAGATGGAGATTCGAGTGAGAAAATAGATGTGGCAATGGCAACGGCAATTGAAGAAGTGAAAGTAGAGGCAAAATCTGGTGAGTTAGAAGCACAGAGGAGGAGGGCTGTGTGGTGGAAGGTTCCTTTTCAGTTGTTGAGGTACTGCTTTTTAAGGACTAGCCCTGCCTGGTCCTTTTCTGTGGCTGCTGCTTTCATGGGAATGGTGATATTGGGACGTAGATTGTACAGGATGAAGAGGAAAGCCAAGAGTCTTCATTTGAAGATTGCTGTGGTTGATAAGGTTAGTTGTTGCTTCTTTTGATTATCATATTTTTGCAATTCTTGGGTGAAGTTCTTTTGTTTAATAGCCTCTTTGGAAGTAAGTAACATAGTGATTGAACATGTTTGGAGATCTAAGTTCAACTCTGAGAAACCTAATTTGTTTTCTGGGATGTCGTTCTTGTGATTGAGATGGTGTTGTTCTAAGCTTTTTTTGATTGTTTCAATAGGATAGCTTTCCTCTCAATGAAATTTCTTTCTTGGAAGAAGAATATTTTAGGACTTTGATTGACATTGAACGCACCTGTGATCCATCATAAATGCTCTCTATTAATTGTGATTTTTGTGTTGAAATTGATATGGACTATCTTGATTATCTGGGTTACCTATATTTGTCAACATGGACAAGTTCCACCATTGTAAATTGTTTGAGAAACGTTTTGGAACCTGGTAAAAACTAACCAAATTTTGTTGTTACTTCTGAAACTACCTTATTTTAATTATTTCTTGCTAAAGAACTCCTGTAGCCAGTGCCAAGAAACTTGACTCCTTTAGCTATTTTTGCGTTTTTTCTGCTTTTGATCGAACATTTTGGGAAGGAACTCCAGATGATTTAATGCCTAAACTTAAGGGTTGTATAAAGAGTCAAAAACCCTTTTGGTTTGGATTTTTTTTTGTTCCGATGGAATGTCAGAACTTTTTGTTGTTCTTGTATTCGTAGTGTCCGAGCCAACCTATGCAAATCTCGACTAATCTCACGGGACAACCTATCTGACCTTACAACATTTTGGTGTCAAGAAAACTCATAGAATATTAATTCTAAGTTGGTGTTTATCATGGATTTAATCCAATCCCTTTAAGTCCTTTGTTATATCAATTTTCTTTATTTACCACTAGGTCAACCTGTGATGATTGAGACGACAGAACTAAGAAATCTGAAAGTATAGTAGAATCAGTTAGAACTTTTAAAGATTGGGATGCAGTTGGATTATTGAATGAAAGGTTGTTAGTGGGTCAACTAGTCTAGATTAGAATAGAAACTTGCATTGCCTTGTGCGATGTATAAGTTCCTCATTATGAGTGATTGAGTAAAATAATAAGGTTTTGTCCCCTTCCCATATAATGATCCATATCATAGTCTGCAAAAGTTGATTGAATGGTGATAAAAACTTATACTGGTTGCACAACTTTTGTAGAAGGTATCGCAATTTGCAGATCAGGCTGCACGTTTGAACGAGGCCTTCTCGGTGGTGAGACGGGTGCCTGTGGTGAGAGCTCCATTGACAGGTGCAGGTGCAAGTTCTTGGCCTGCCATGAGTATGAGATGAAGTTTCTTGTATTCATTGAAATTTCAACTATTTCCAGTGTTCGAGGTCTGCATGTTTGTCATCATAAGTTATGTAACTGTGAAGTTCATAGGAAGTTTTTTTCCCTTTTTTTTTTTTTTGCGATGAATATGATTTATGTGTAAATGAAATATCTAAGCCTCTTCCTTCAACAATTACGTTTAAATATCTAGATTTTTGGATGATAA CAAAAAATCAAGTCCACAAAAAAGAAACCTCCCTCTACAAGAATAAAAGAGAAGCTTTTATTACTATCTATTTTGAAGTTGTATGTATTTTGTACAAGAACGGGATCGTGGATTTTGACTAGCGGTAGCAGTTTGTATTATAAAACGGAAAAAGCAAGAAGAATAAAGATCTTTCCTTTCTAACAAAATGGTGGAGAAAGAGTGATGTCCCGGCAACGACGAACAAGGAATAACTGCCGTGCAACTTGTGTGTGATTCTCCAGAAGCCACCGCCATGGAGAATGAAGGTTCAGGAAGCGAATTCCAGGATTGGGAGGTTCTTCATGAGTATGACGAAACTTTCCTCCAAGTTAACTCCTCCAATTTTCCCGATTCGAACTCGAGGTTTTTTCAGGAAATTGAAGGCGATTCAGCCTCTGGAAGCACAATCTGGTTGGATTACTTCTCTCTTCGTAATCACGAACCGACTGCAAACACTGCCTTGAAGTCTACTCTAAGCAATGAATGTTTGGTCGAGGCAGAAAACCTCAACTCCATTGATTCTGAATCGGAGAATCGGAATTGTCACAAGAATATAAGTGAATTAGGGTCCGAGTTGGGAGACGACCTTTTGGACGAATATGAATTGAACCAATCTCATACGAACGATCTTTCAGATATTACTAAAAGCGTAACAGGTTTCGAAGAAATTTCAACCGACGCCGAGAATTTGGATAGACAGGAGGCCGATGATGGTAAATTGAAAGGCTCTCCTCTTGTTGCTACAGATGAATCGTTTTCTAGGAAGGAAATGTCTAACCCAACGGAATCCGAAGAATCTGGTGAAGAAAGTGAGAGCCAGGACGAGGTCTTGGACGACTCTTACTCTAATTCGAGTGGAAATGAGTCAGTTGCCATGAAATCTGTAGACGATGGAAAAGAGAACGATCATATAGACAGTGTAAATGAGATTTCGAACAATGATTTGGGTGGAGGAGATGGAGATTCGAGTGAGAAAATAGATGTGGCAATGGCAACGGCAATTGAAGAAGTGAAAGTAGAGGCAAAATCTGGTGAGTTAGAAGCACAGAGGAGGAGGGCTGTGTGGTGGAAGGTTCCTTTTCAGTTGTTGAGGTACTGCTTTTTAAGGACTAGCCCTGCCTGGTCCTTTTCTGTGGCTGCTGCTTTCATGGGAATGGTGATATTGGGACGTAGATTGTACAGGATGAAGAGGAAAGCCAAGAGTCTTCATTTGAAGATTGCTGTGGTTGATAAGAAGGTATCGCAATTTGCAGATCAGGCTGCACGTTTGAACGAGGCCTTCTCGGTGGTGAGACGGGTGCCTGTGGTGAGAGCTCCATTGACAGGTGCAGGTGCAAGTTCTTGGCCTGCCATGAGTATGAGATGAAGTTTCTTGTATTCATTGAAATTTCAACTATTTCCAGTGTTCGAGGTCTGCATGTTTGTCATCATAAGTTATGTAACTGTGAAGTTCATAGGAAGTTTTTTTCCCTTTTTTTTTTTTTTGCGATGAATATGATTTATGTGTAAATGAAATATCTAAGCCTCTTCCTTCAACAATTACGTTTAAATATCTAGATTTTTGGATGATAA ATGGAGAATGAAGGTTCAGGAAGCGAATTCCAGGATTGGGAGGTTCTTCATGAGTATGACGAAACTTTCCTCCAAGTTAACTCCTCCAATTTTCCCGATTCGAACTCGAGGTTTTTTCAGGAAATTGAAGGCGATTCAGCCTCTGGAAGCACAATCTGGTTGGATTACTTCTCTCTTCGTAATCACGAACCGACTGCAAACACTGCCTTGAAGTCTACTCTAAGCAATGAATGTTTGGTCGAGGCAGAAAACCTCAACTCCATTGATTCTGAATCGGAGAATCGGAATTGTCACAAGAATATAAGTGAATTAGGGTCCGAGTTGGGAGACGACCTTTTGGACGAATATGAATTGAACCAATCTCATACGAACGATCTTTCAGATATTACTAAAAGCGTAACAGGTTTCGAAGAAATTTCAACCGACGCCGAGAATTTGGATAGACAGGAGGCCGATGATGGTAAATTGAAAGGCTCTCCTCTTGTTGCTACAGATGAATCGTTTTCTAGGAAGGAAATGTCTAACCCAACGGAATCCGAAGAATCTGGTGAAGAAAGTGAGAGCCAGGACGAGGTCTTGGACGACTCTTACTCTAATTCGAGTGGAAATGAGTCAGTTGCCATGAAATCTGTAGACGATGGAAAAGAGAACGATCATATAGACAGTGTAAATGAGATTTCGAACAATGATTTGGGTGGAGGAGATGGAGATTCGAGTGAGAAAATAGATGTGGCAATGGCAACGGCAATTGAAGAAGTGAAAGTAGAGGCAAAATCTGGTGAGTTAGAAGCACAGAGGAGGAGGGCTGTGTGGTGGAAGGTTCCTTTTCAGTTGTTGAGGTACTGCTTTTTAAGGACTAGCCCTGCCTGGTCCTTTTCTGTGGCTGCTGCTTTCATGGGAATGGTGATATTGGGACGTAGATTGTACAGGATGAAGAGGAAAGCCAAGAGTCTTCATTTGAAGATTGCTGTGGTTGATAAGAAGGTATCGCAATTTGCAGATCAGGCTGCACGTTTGAACGAGGCCTTCTCGGTGGTGAGACGGGTGCCTGTGGTGAGAGCTCCATTGACAGGTGCAGGTGCAAGTTCTTGGCCTGCCATGAGTATGAGATGA MENEGSGSEFQDWEVLHEYDETFLQVNSSNFPDSNSRFFQEIEGDSASGSTIWLDYFSLRNHEPTANTALKSTLSNECLVEAENLNSIDSESENRNCHKNISELGSELGDDLLDEYELNQSHTNDLSDITKSVTGFEEISTDAENLDRQEADDGKLKGSPLVATDESFSRKEMSNPTESEESGEESESQDEVLDDSYSNSSGNESVAMKSVDDGKENDHIDSVNEISNNDLGGGDGDSSEKIDVAMATAIEEVKVEAKSGELEAQRRRAVWWKVPFQLLRYCFLRTSPAWSFSVAAAFMGMVILGRRLYRMKRKAKSLHLKIAVVDKKVSQFADQAARLNEAFSVVRRVPVVRAPLTGAGASSWPAMSMR Homology
BLAST of Lsi03G004780 vs. ExPASy TrEMBL
Match: A0A5A7T6D7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00740 PE=4 SV=1) HSP 1 Score: 526.6 bits (1355), Expect = 8.6e-146 Identity = 288/366 (78.69%), Postives = 318/366 (86.89%), Query Frame = 0
BLAST of Lsi03G004780 vs. ExPASy TrEMBL
Match: A0A1S3B3K7 (uncharacterized protein LOC103485392 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485392 PE=4 SV=1) HSP 1 Score: 526.6 bits (1355), Expect = 8.6e-146 Identity = 288/366 (78.69%), Postives = 318/366 (86.89%), Query Frame = 0
BLAST of Lsi03G004780 vs. ExPASy TrEMBL
Match: A0A1S3B2D6 (uncharacterized protein LOC103485392 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485392 PE=4 SV=1) HSP 1 Score: 515.8 bits (1327), Expect = 1.5e-142 Identity = 285/366 (77.87%), Postives = 315/366 (86.07%), Query Frame = 0
BLAST of Lsi03G004780 vs. ExPASy TrEMBL
Match: A0A0A0LQL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401370 PE=4 SV=1) HSP 1 Score: 483.8 bits (1244), Expect = 6.4e-133 Identity = 271/366 (74.04%), Postives = 300/366 (81.97%), Query Frame = 0
BLAST of Lsi03G004780 vs. ExPASy TrEMBL
Match: A0A6J1GRS2 (uncharacterized protein LOC111456864 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456864 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 6.9e-127 Identity = 261/372 (70.16%), Postives = 298/372 (80.11%), Query Frame = 0
BLAST of Lsi03G004780 vs. NCBI nr
Match: XP_038886526.1 (uncharacterized protein LOC120076701 isoform X1 [Benincasa hispida]) HSP 1 Score: 551.2 bits (1419), Expect = 6.8e-153 Identity = 306/376 (81.38%), Postives = 326/376 (86.70%), Query Frame = 0
BLAST of Lsi03G004780 vs. NCBI nr
Match: XP_038886527.1 (uncharacterized protein LOC120076701 isoform X2 [Benincasa hispida]) HSP 1 Score: 545.0 bits (1403), Expect = 4.8e-151 Identity = 305/376 (81.12%), Postives = 325/376 (86.44%), Query Frame = 0
BLAST of Lsi03G004780 vs. NCBI nr
Match: KAA0037045.1 (uncharacterized protein E6C27_scaffold86G001400 [Cucumis melo var. makuwa] >TYK06606.1 uncharacterized protein E5676_scaffold453G00740 [Cucumis melo var. makuwa]) HSP 1 Score: 526.6 bits (1355), Expect = 1.8e-145 Identity = 288/366 (78.69%), Postives = 318/366 (86.89%), Query Frame = 0
BLAST of Lsi03G004780 vs. NCBI nr
Match: XP_008441179.1 (PREDICTED: uncharacterized protein LOC103485392 isoform X1 [Cucumis melo]) HSP 1 Score: 526.6 bits (1355), Expect = 1.8e-145 Identity = 288/366 (78.69%), Postives = 318/366 (86.89%), Query Frame = 0
BLAST of Lsi03G004780 vs. NCBI nr
Match: XP_008441180.1 (PREDICTED: uncharacterized protein LOC103485392 isoform X2 [Cucumis melo]) HSP 1 Score: 515.8 bits (1327), Expect = 3.1e-142 Identity = 285/366 (77.87%), Postives = 315/366 (86.07%), Query Frame = 0
BLAST of Lsi03G004780 vs. TAIR 10
Match: AT4G10080.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 120 Blast hits to 114 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-27 Identity = 98/269 (36.43%), Postives = 141/269 (52.42%), Query Frame = 0
BLAST of Lsi03G004780 vs. TAIR 10
Match: AT4G13530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 106.7 bits (265), Expect = 4.1e-23 Identity = 91/262 (34.73%), Postives = 144/262 (54.96%), Query Frame = 0
BLAST of Lsi03G004780 vs. TAIR 10
Match: AT4G13530.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1); Has 70 Blast hits to 69 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 102.8 bits (255), Expect = 5.9e-22 Identity = 89/262 (33.97%), Postives = 142/262 (54.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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