Lsi03G004580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G004580
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSubtilisin-like protease SBT3.5 isoform X1
Locationchr03: 5183804 .. 5184046 (-)
RNA-Seq ExpressionLsi03G004580
SyntenyLsi03G004580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAACTTAGAGCTTGAAAGGATTGTGTCCTTAATTACAGGTGAGAAAGAGGAGAAGGCTCGTAGGAAACGATTGATCGACGAACTTCATGAGATACCTGATTTGAGCTTCGACTCCGAGGATGGATTTGAGCTTTTCCTAACGTTGTTTGGCGATGTCCAAAAGACCAATTGCTTCCTTAGTTTACCGAAGAACAAGAAATATGAGTATTGCATGGATCTGTTAGGGAAGCGCGGCTAA

mRNA sequence

ATGCATAACTTAGAGCTTGAAAGGATTGTGTCCTTAATTACAGGTGAGAAAGAGGAGAAGGCTCGTAGGAAACGATTGATCGACGAACTTCATGAGATACCTGATTTGAGCTTCGACTCCGAGGATGGATTTGAGCTTTTCCTAACGTTGTTTGGCGATGTCCAAAAGACCAATTGCTTCCTTAGTTTACCGAAGAACAAGAAATATGAGTATTGCATGGATCTGTTAGGGAAGCGCGGCTAA

Coding sequence (CDS)

ATGCATAACTTAGAGCTTGAAAGGATTGTGTCCTTAATTACAGGTGAGAAAGAGGAGAAGGCTCGTAGGAAACGATTGATCGACGAACTTCATGAGATACCTGATTTGAGCTTCGACTCCGAGGATGGATTTGAGCTTTTCCTAACGTTGTTTGGCGATGTCCAAAAGACCAATTGCTTCCTTAGTTTACCGAAGAACAAGAAATATGAGTATTGCATGGATCTGTTAGGGAAGCGCGGCTAA

Protein sequence

MHNLELERIVSLITGEKEEKARRKRLIDELHEIPDLSFDSEDGFELFLTLFGDVQKTNCFLSLPKNKKYEYCMDLLGKRG
Homology
BLAST of Lsi03G004580 vs. ExPASy TrEMBL
Match: A0A5A7T617 (Subtilisin-like protease SBT3.5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001220 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 14  TGEKEEKARRKRLIDELHEIPDLSFDSEDGFELFLTLFGDVQKTNCFLSLPKNKKYEYCM 73
           + EKEE+ + K L+DEL+ +P LS  S D  E+FL LF +VQKT+CFLSL  NKKYEYCM
Sbjct: 126 SSEKEEE-KAKWLVDELYGLPGLS--SVDALEIFLMLFDNVQKTDCFLSLHMNKKYEYCM 185

Query: 74  DLLGKR 80
           DLLG+R
Sbjct: 186 DLLGRR 188

BLAST of Lsi03G004580 vs. NCBI nr
Match: XP_004138648.1 (subtilisin-like protease SBT3.5 isoform X1 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 10  VSLITGEKEEKARRKRLIDELHEIPDLSFDSEDGFELFLTLFGDVQKTNCFLSLPKNKKY 69
           VS ++ EKEE+ + K L+DEL+ +P LS  S +  E+FL LF DVQKT+CFLS   NKKY
Sbjct: 103 VSRVSREKEEE-KDKSLVDELYGLPGLS--SNNALEIFLMLFDDVQKTDCFLSFHMNKKY 162

Query: 70  EYCMDLLGKR 80
           EYCMDLLG+R
Sbjct: 163 EYCMDLLGRR 169

BLAST of Lsi03G004580 vs. NCBI nr
Match: KAA0037007.1 (subtilisin-like protease SBT3.5 isoform X1 [Cucumis melo var. makuwa] >TYK06644.1 subtilisin-like protease SBT3.5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 14  TGEKEEKARRKRLIDELHEIPDLSFDSEDGFELFLTLFGDVQKTNCFLSLPKNKKYEYCM 73
           + EKEE+ + K L+DEL+ +P LS  S D  E+FL LF +VQKT+CFLSL  NKKYEYCM
Sbjct: 126 SSEKEEE-KAKWLVDELYGLPGLS--SVDALEIFLMLFDNVQKTDCFLSLHMNKKYEYCM 185

Query: 74  DLLGKR 80
           DLLG+R
Sbjct: 186 DLLGRR 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T6176.0e-1262.12Subtilisin-like protease SBT3.5 isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
Match NameE-valueIdentityDescription
XP_004138648.12.5e-1260.00subtilisin-like protease SBT3.5 isoform X1 [Cucumis sativus][more]
KAA0037007.11.2e-1162.12subtilisin-like protease SBT3.5 isoform X1 [Cucumis melo var. makuwa] >TYK06644.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004580.1Lsi03G004580.1mRNA