Lsi03G004480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G004480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr03: 5084992 .. 5085510 (-)
RNA-Seq Expression	Lsi03G004480
Synteny	Lsi03G004480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATAACCTAGCTTTCACTGATAGAGACACTACTCCCGAGGAGAATCGCCCTTCTCAACACCAATGTCATCGTGATTCGCCTCATTTGCTTACTTTTAACGGTCCCTTCCAAGCCCCTAGCAATACTATTGTTGCTTTAGATGCATCGCTTGCCACTTGGAAGAGCGTACCTGGCCAACCTTCCCTAGAGGGTTGGAACAACCCCCAACAAAGCATGACGAATAGCTTACTTCACTTTCGAGAGGTAAACTTGATTTCTTGCCTCTGTTGTGCTTTTGTATTTATCTTTCTAACCATATTGTTTGCACAGGGCTATGTGAGCTTGATATTGGCAGCTCAACGAATGACTTCTGAGCTCAACTATCTTCATACAAACTCAATACCTCTAAAGAAACACGAGCAATTGCAGAATTGTAGCACCAATTCTACTAAATCATTGCTTCACGCAGAAGAACTAGTCTCATCTCTTCAGGCCAAACTGGAGAAGTCTGAGAGTAGCCTAGCTATCACCTAA

mRNA sequence

ATGTCGAATAACCTAGCTTTCACTGATAGAGACACTACTCCCGAGGAGAATCGCCCTTCTCAACACCAATGTCATCGTGATTCGCCTCATTTGCTTACTTTTAACGGTCCCTTCCAAGCCCCTAGCAATACTATTGTTGCTTTAGATGCATCGCTTGCCACTTGGAAGAGCGTACCTGGCCAACCTTCCCTAGAGGGTTGGAACAACCCCCAACAAAGCATGACGAATAGCTTACTTCACTTTCGAGAGGGCTATGTGAGCTTGATATTGGCAGCTCAACGAATGACTTCTGAGCTCAACTATCTTCATACAAACTCAATACCTCTAAAGAAACACGAGCAATTGCAGAATTGTAGCACCAATTCTACTAAATCATTGCTTCACGCAGAAGAACTAGTCTCATCTCTTCAGGCCAAACTGGAGAAGTCTGAGAGTAGCCTAGCTATCACCTAA

Coding sequence (CDS)

ATGTCGAATAACCTAGCTTTCACTGATAGAGACACTACTCCCGAGGAGAATCGCCCTTCTCAACACCAATGTCATCGTGATTCGCCTCATTTGCTTACTTTTAACGGTCCCTTCCAAGCCCCTAGCAATACTATTGTTGCTTTAGATGCATCGCTTGCCACTTGGAAGAGCGTACCTGGCCAACCTTCCCTAGAGGGTTGGAACAACCCCCAACAAAGCATGACGAATAGCTTACTTCACTTTCGAGAGGGCTATGTGAGCTTGATATTGGCAGCTCAACGAATGACTTCTGAGCTCAACTATCTTCATACAAACTCAATACCTCTAAAGAAACACGAGCAATTGCAGAATTGTAGCACCAATTCTACTAAATCATTGCTTCACGCAGAAGAACTAGTCTCATCTCTTCAGGCCAAACTGGAGAAGTCTGAGAGTAGCCTAGCTATCACCTAA

Protein sequence

MSNNLAFTDRDTTPEENRPSQHQCHRDSPHLLTFNGPFQAPSNTIVALDASLATWKSVPGQPSLEGWNNPQQSMTNSLLHFREGYVSLILAAQRMTSELNYLHTNSIPLKKHEQLQNCSTNSTKSLLHAEELVSSLQAKLEKSESSLAIT

Homology

The following BLAST results are available for this feature:

BLAST of Lsi03G004480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G004480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G004480 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G004480 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004480.1	Lsi03G004480.1	mRNA