Lsi03G004380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G004380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger protein 6-like
Location	chr03: 4928284 .. 4928772 (+)
RNA-Seq Expression	Lsi03G004380
Synteny	Lsi03G004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGTCTCAGCTGAAGCTTTTTGGCTTTAACATCACAAAAGAGAATAAAACAGTTTCACATTTTACACAGCCGCCGTCGGCGGTGTGGCCGGAATCTGAAAATCCCCATGTCCCAAAGTTCGAGTGCCAATATTGTTGCAGAGAATTTTCCAATTCGCAAGCTTTGGGTGGCCATCAAAACGCCCATAGAGAAGAAAGACAGCTTTTGAAGAGAGCTCAAATGAAATCTTGCCATCGTAATTATTTCACAGCTCTGCACGTGCAGAACTGGCTATCGTCGTCCTTTGCGCCGCCGCCGACGGTGGTGGGTGCTCCTCCACTGGCGGCGGGGCTTTACGCTATGTCGCGGCCGCCGTTATCCCAAGAGGTTCGGCGGCAGGCCGGAGTTTTTACGGGGGCGGTCGGGGTTGTTGGAGATGAAGATGTTTCCGGTAGGAGTTTGGGCCTGGATTTACAGCTTAGTCTTGGGCCTGGTAAGCCTTGA

mRNA sequence

ATGTCTAAGTCTCAGCTGAAGCTTTTTGGCTTTAACATCACAAAAGAGAATAAAACAGTTTCACATTTTACACAGCCGCCGTCGGCGGTGTGGCCGGAATCTGAAAATCCCCATGTCCCAAAGTTCGAGTGCCAATATTGTTGCAGAGAATTTTCCAATTCGCAAGCTTTGGGTGGCCATCAAAACGCCCATAGAGAAGAAAGACAGCTTTTGAAGAGAGCTCAAATGAAATCTTGCCATCGTAATTATTTCACAGCTCTGCACGTGCAGAACTGGCTATCGTCGTCCTTTGCGCCGCCGCCGACGGTGGTGGGTGCTCCTCCACTGGCGGCGGGGCTTTACGCTATGTCGCGGCCGCCGTTATCCCAAGAGGTTCGGCGGCAGGCCGGAGTTTTTACGGGGGCGGTCGGGGTTGTTGGAGATGAAGATGTTTCCGGTAGGAGTTTGGGCCTGGATTTACAGCTTAGTCTTGGGCCTGGTAAGCCTTGA

Coding sequence (CDS)

ATGTCTAAGTCTCAGCTGAAGCTTTTTGGCTTTAACATCACAAAAGAGAATAAAACAGTTTCACATTTTACACAGCCGCCGTCGGCGGTGTGGCCGGAATCTGAAAATCCCCATGTCCCAAAGTTCGAGTGCCAATATTGTTGCAGAGAATTTTCCAATTCGCAAGCTTTGGGTGGCCATCAAAACGCCCATAGAGAAGAAAGACAGCTTTTGAAGAGAGCTCAAATGAAATCTTGCCATCGTAATTATTTCACAGCTCTGCACGTGCAGAACTGGCTATCGTCGTCCTTTGCGCCGCCGCCGACGGTGGTGGGTGCTCCTCCACTGGCGGCGGGGCTTTACGCTATGTCGCGGCCGCCGTTATCCCAAGAGGTTCGGCGGCAGGCCGGAGTTTTTACGGGGGCGGTCGGGGTTGTTGGAGATGAAGATGTTTCCGGTAGGAGTTTGGGCCTGGATTTACAGCTTAGTCTTGGGCCTGGTAAGCCTTGA

Protein sequence

MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPPLSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP

Homology

[Close]

BLAST of Lsi03G004380 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.8e-19
Identity = 72/198 (36.36%), Postives = 94/198 (47.47%), Query Frame = 0


Query: 4   SQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGHQNA 63
           S LKLFG N+ +     +  ++P       SE+    K+ECQYCCREF+NSQALGGHQNA
Sbjct: 6   SSLKLFGINLLETTSVQNQSSEPRPGSGSGSES---RKYECQYCCREFANSQALGGHQNA 65

Query: 64  HREERQLLKRAQMKSC-----HRNYFTALHVQNWLSSSFA----------PPPTVVGAPP 123
           H++ERQLLKRAQM +      H N+       N L S+FA          PPP ++ +P 
Sbjct: 66  HKKERQLLKRAQMLATRGLPRHHNFHPH---TNPLLSAFAPLPHLLSQPHPPPHMMLSPS 125

Query: 124 LAA----------------------GLYAMSRPPLSQEVRRQAGVFTGAVGVVGDEDVSG 160
            ++                      GLY      ++ EV+   G         GD D S 
Sbjct: 126 SSSSKWLYGEHMSSQNAVGYFHGGRGLYGGGMESMAGEVKTHGGSLPEMRRFAGDSDRSS 185

[Close]

BLAST of Lsi03G004380 vs. ExPASy Swiss-Prot
Match: Q9C9H1 (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 41  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSCHR---NYFTA----LHVQNWL 100
           K+ECQYCCREF NSQALGGHQNAH++ERQ LKRAQ+++      N+  A      ++N +
Sbjct: 72  KYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSNAGSASQFLRNPI 131

Query: 101 SSSFAPPPTVVGA 107
            S+FAPPP ++ +
Sbjct: 132 VSAFAPPPHLLSS 144

[Close]

BLAST of Lsi03G004380 vs. ExPASy Swiss-Prot
Match: Q39264 (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 2   SKSQLKLFGFNITKENKTVSHFT-QPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 61
           S   +KLFGF +   ++T    T +  S+    +    + + ECQYC +EF+NSQALGGH
Sbjct: 19  SDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGH 78

Query: 62  QNAHREERQLLKRAQMKSCHRN--YFTALHVQ 91
           QNAH++ER   KR Q+++   +  Y+   H Q
Sbjct: 79  QNAHKKERLKKKRLQLQARRASIGYYLTNHQQ 110

[Close]

BLAST of Lsi03G004380 vs. ExPASy Swiss-Prot
Match: P93751 (Zinc finger protein 8 OS=Arabidopsis thaliana OX=3702 GN=ZFP8 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 33  ESENPHVPKFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSC--HRNYFTALHVQ 92
           + +N +  +FEC YC R F  SQALGGHQNAH+ ERQ  KR  M S   H       H+ 
Sbjct: 86  DKDNNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKRGSMTSYLHHHQPHDPHHIY 145

Query: 93  NWLSS 96
            +L++
Sbjct: 146 GFLNN 150

[Close]

BLAST of Lsi03G004380 vs. ExPASy Swiss-Prot
Match: Q84WI0 (Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 39/111 (35.14%), Postives = 47/111 (42.34%), Query Frame = 0


Query: 38  HVPKFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSCH---RNYFTALHVQNWLS 97
           H  +FEC YC R F  SQALGGHQNAH+ ERQL KR      +    N ++  H  +W +
Sbjct: 87  HNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSYRHYPSWTN 146

Query: 98  ------------SSFAPPPTVVGAPPLAAGLYAMSRPPLSQEVRRQAGVFT 134
                       SS   P      P   + L     PP  Q V      FT
Sbjct: 147 GPLTAARSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFT 197

[Close]

BLAST of Lsi03G004380 vs. ExPASy TrEMBL
Match: A0A6J1FG99 (zinc finger protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111445220 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.9e-62
Identity = 123/162 (75.93%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 60
           M+ SQLKLFGFNI++++K+VS+FT+PP A  PES  PH PKFECQYCCR FSNSQALGGH
Sbjct: 1   MANSQLKLFGFNISEDHKSVSNFTEPPPAELPESRYPHAPKFECQYCCRGFSNSQALGGH 60

Query: 61  QNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPP 120
           QNAHREER+LLKRAQ+KSCH NYFT LH+ NWLSSSFAP P  +  PP AAGL+AMSRP 
Sbjct: 61  QNAHREERRLLKRAQIKSCHLNYFTPLHLHNWLSSSFAPQPPSI--PPQAAGLHAMSRPL 120

Query: 121 LSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           LSQ+V RQAGV TGAVG VGDE V GR LGLDLQLSLGP KP
Sbjct: 121 LSQDVWRQAGVITGAVGGVGDEAVPGRGLGLDLQLSLGPSKP 160

[Close]

BLAST of Lsi03G004380 vs. ExPASy TrEMBL
Match: A0A6J1JW51 (zinc finger protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111489415 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.4e-61
Identity = 122/162 (75.31%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 60
           M+ SQLKLFGFNI++ + +VS+FT+PP A  PES  PH PKFECQYCCR FSNSQALGGH
Sbjct: 1   MANSQLKLFGFNISEHHNSVSNFTEPPPAELPESRYPHAPKFECQYCCRGFSNSQALGGH 60

Query: 61  QNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPP 120
           QNAHREER+LLKRAQ+KSCH NYFT LHV+NWLSSSF P P     P  AAGL+AMSRPP
Sbjct: 61  QNAHREERRLLKRAQIKSCHLNYFTPLHVRNWLSSSFVPQPP--STPLQAAGLHAMSRPP 120

Query: 121 LSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           LSQ+V RQAGV TGAVG VGDE V GR LGLDLQLSLGP KP
Sbjct: 121 LSQDVWRQAGVITGAVGGVGDEAVPGRGLGLDLQLSLGPSKP 160

[Close]

BLAST of Lsi03G004380 vs. ExPASy TrEMBL
Match: A0A0A0LQ31 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404810 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-24
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAV-WPESENPHVPKFECQYCCREFSNSQALGG 60
           +S S LKLFGF+I+KENK VS+F +PP  V  PESEN   PKFEC+YCCR+FSNSQALGG
Sbjct: 34  VSNSHLKLFGFSISKENKRVSNFKEPPLTVESPESENSFPPKFECRYCCRQFSNSQALGG 93

Query: 61  HQNAHREERQLLKRAQMKSCHRNYF 85
           HQNAH+EERQLLK  Q+K   RNYF
Sbjct: 94  HQNAHKEERQLLKTPQIKYFRRNYF 118

[Close]

BLAST of Lsi03G004380 vs. ExPASy TrEMBL
Match: A0A2I4DX61 (zinc finger protein GIS3-like OS=Juglans regia OX=51240 GN=LOC108984293 PE=4 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-20
Identity = 80/208 (38.46%), Postives = 97/208 (46.63%), Query Frame = 0


Query: 6   LKLFGF---NITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGHQN 65
           LKLFGF   N+++EN + S  T          ++    KFECQYCCREF+NSQALGGHQN
Sbjct: 18  LKLFGFKIQNVSEENDSDSSKTPSGLHETEAFQSTEGRKFECQYCCREFANSQALGGHQN 77

Query: 66  AHREERQLLKRAQMKSCHRNYFTALHV-QNWLSSSFAPPP----TVVGAPPLAAGLYAMS 125
           AH++ERQLLKRAQM++       A H+ Q  + S+F PPP      VGAPP +   + MS
Sbjct: 78  AHKKERQLLKRAQMQASRNQLGAASHLRQTPIISAFTPPPHFLGPAVGAPPQSPSWFLMS 137

Query: 126 RP-----------------------------------------PLSQEVRRQAGVFTGAV 163
            P                                           S  V   AG+  G  
Sbjct: 138 HPGAATPAFTLQPSSGVYHSGATTSVPGRRVYAAGGVGEPMMTVFSHGVGNHAGIVPGGS 197

[Close]

BLAST of Lsi03G004380 vs. ExPASy TrEMBL
Match: A0A6A1VGC0 (Zinc finger protein 6 OS=Morella rubra OX=262757 GN=CJ030_MR6G021594 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-20
Identity = 77/198 (38.89%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 6   LKLFGFNI---TKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGHQN 65
           LKLFGFNI   ++EN + +  +   S      ++    K+ECQYCCREF+NSQALGGHQN
Sbjct: 20  LKLFGFNIGNVSEENDSDASKSPSGSQESETIQSSDGRKYECQYCCREFANSQALGGHQN 79

Query: 66  AHREERQLLKRAQMKSCHRNYFTALHV-QNWLSSSFAPPPTVV--GAPP----------- 125
           AH++ERQLLKRAQM++       A H+ QN + S+F PP  +    APP           
Sbjct: 80  AHKKERQLLKRAQMQASRNQLAAASHLRQNTMMSAFTPPAHLFAPAAPPQSSWFLVSHAG 139

Query: 126 -------------------------LAAGLYAMSRPPLSQEVRRQAGVFTGAVGVVGDED 160
                                     A G+        S  V  +AGV  G  G  GD +
Sbjct: 140 AATPFSLPNGGAYPSGAASVPGRRVYAGGVGESMMAVFSHGVGNRAGVVPGLTGFTGDGE 199

[Close]

BLAST of Lsi03G004380 vs. NCBI nr
Match: XP_038886238.1 (zinc finger protein 6-like [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.8e-68
Identity = 137/166 (82.53%), Postives = 144/166 (86.75%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAV-WPESENPHVPKFECQYCCREFSNSQALGG 60
           M KS+LKLFGFNI+KE KTVS+ T+PP A+ WPESENPH PKFECQYCCREFSNSQALGG
Sbjct: 1   MPKSRLKLFGFNISKEKKTVSNVTKPPPAMEWPESENPHAPKFECQYCCREFSNSQALGG 60

Query: 61  HQNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPP--PTVVGAPPLAAG-LYAM 120
           HQNAHREERQLLK AQMKSCHRNY TALHVQNWLSSSF PP  P VVG PP  A  +YAM
Sbjct: 61  HQNAHREERQLLKSAQMKSCHRNYITALHVQNWLSSSFPPPPLPAVVGGPPSTAEMIYAM 120

Query: 121 SRPPLSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           SRP LSQEVRRQAG  TG +GVVGDEDVSG SLGLDLQLSLGPGKP
Sbjct: 121 SRPLLSQEVRRQAGDLTGVIGVVGDEDVSGWSLGLDLQLSLGPGKP 166

[Close]

BLAST of Lsi03G004380 vs. NCBI nr
Match: XP_022939247.1 (zinc finger protein 6-like [Cucurbita moschata])

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 123/162 (75.93%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 60
           M+ SQLKLFGFNI++++K+VS+FT+PP A  PES  PH PKFECQYCCR FSNSQALGGH
Sbjct: 1   MANSQLKLFGFNISEDHKSVSNFTEPPPAELPESRYPHAPKFECQYCCRGFSNSQALGGH 60

Query: 61  QNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPP 120
           QNAHREER+LLKRAQ+KSCH NYFT LH+ NWLSSSFAP P  +  PP AAGL+AMSRP 
Sbjct: 61  QNAHREERRLLKRAQIKSCHLNYFTPLHLHNWLSSSFAPQPPSI--PPQAAGLHAMSRPL 120

Query: 121 LSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           LSQ+V RQAGV TGAVG VGDE V GR LGLDLQLSLGP KP
Sbjct: 121 LSQDVWRQAGVITGAVGGVGDEAVPGRGLGLDLQLSLGPSKP 160

[Close]

BLAST of Lsi03G004380 vs. NCBI nr
Match: KAG6578343.1 (Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 123/162 (75.93%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 60
           M+ SQLKLFGFNI++++K+VS+FT+PP A  PES  PH PKFECQYCCR FSNSQALGGH
Sbjct: 1   MANSQLKLFGFNISEDHKSVSNFTEPPPAELPESRYPHAPKFECQYCCRGFSNSQALGGH 60

Query: 61  QNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPP 120
           QNAHREER+LLKRAQ+KSCH NYFT LHVQNWLSSSF P P     P  AAGL+AMSRP 
Sbjct: 61  QNAHREERRLLKRAQIKSCHLNYFTPLHVQNWLSSSFVPKPP--STPLQAAGLHAMSRPL 120

Query: 121 LSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           LSQ+V RQAGV TGAVG VGDE V GR LGLDLQLSLGP KP
Sbjct: 121 LSQDVWRQAGVITGAVGGVGDEAVPGRGLGLDLQLSLGPSKP 160

[Close]

BLAST of Lsi03G004380 vs. NCBI nr
Match: XP_023550962.1 (zinc finger protein 6-like [Cucurbita pepo subsp. pepo] >KAG7015922.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 123/162 (75.93%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 60
           M+ SQLKLFGFNI++++K+VS+FT+PP A  PES  PH PKFECQYCCR FSNSQALGGH
Sbjct: 1   MANSQLKLFGFNISEDHKSVSNFTEPPPAELPESRYPHAPKFECQYCCRGFSNSQALGGH 60

Query: 61  QNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPP 120
           QNAHREER+LLKRAQ+KSCH NYFT LHVQNWLSSSF P P     P  AAGL+AMSRP 
Sbjct: 61  QNAHREERRLLKRAQIKSCHLNYFTPLHVQNWLSSSFVPQPP--STPLQAAGLHAMSRPL 120

Query: 121 LSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           LSQ+V RQAGV TGAVG VGDE V GR LGLDLQLSLGP KP
Sbjct: 121 LSQDVWRQAGVITGAVGGVGDEAVPGRGLGLDLQLSLGPSKP 160

[Close]

BLAST of Lsi03G004380 vs. NCBI nr
Match: XP_022993371.1 (zinc finger protein 6-like [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 122/162 (75.31%), Postives = 134/162 (82.72%), Query Frame = 0


Query: 1   MSKSQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 60
           M+ SQLKLFGFNI++ + +VS+FT+PP A  PES  PH PKFECQYCCR FSNSQALGGH
Sbjct: 1   MANSQLKLFGFNISEHHNSVSNFTEPPPAELPESRYPHAPKFECQYCCRGFSNSQALGGH 60

Query: 61  QNAHREERQLLKRAQMKSCHRNYFTALHVQNWLSSSFAPPPTVVGAPPLAAGLYAMSRPP 120
           QNAHREER+LLKRAQ+KSCH NYFT LHV+NWLSSSF P P     P  AAGL+AMSRPP
Sbjct: 61  QNAHREERRLLKRAQIKSCHLNYFTPLHVRNWLSSSFVPQPP--STPLQAAGLHAMSRPP 120

Query: 121 LSQEVRRQAGVFTGAVGVVGDEDVSGRSLGLDLQLSLGPGKP 163
           LSQ+V RQAGV TGAVG VGDE V GR LGLDLQLSLGP KP
Sbjct: 121 LSQDVWRQAGVITGAVGGVGDEAVPGRGLGLDLQLSLGPSKP 160

[Close]

BLAST of Lsi03G004380 vs. TAIR 10
Match: AT1G67030.1 (zinc finger protein 6 )

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-20
Identity = 72/198 (36.36%), Postives = 94/198 (47.47%), Query Frame = 0


Query: 4   SQLKLFGFNITKENKTVSHFTQPPSAVWPESENPHVPKFECQYCCREFSNSQALGGHQNA 63
           S LKLFG N+ +     +  ++P       SE+    K+ECQYCCREF+NSQALGGHQNA
Sbjct: 6   SSLKLFGINLLETTSVQNQSSEPRPGSGSGSES---RKYECQYCCREFANSQALGGHQNA 65

Query: 64  HREERQLLKRAQMKSC-----HRNYFTALHVQNWLSSSFA----------PPPTVVGAPP 123
           H++ERQLLKRAQM +      H N+       N L S+FA          PPP ++ +P 
Sbjct: 66  HKKERQLLKRAQMLATRGLPRHHNFHPH---TNPLLSAFAPLPHLLSQPHPPPHMMLSPS 125

Query: 124 LAA----------------------GLYAMSRPPLSQEVRRQAGVFTGAVGVVGDEDVSG 160
            ++                      GLY      ++ EV+   G         GD D S 
Sbjct: 126 SSSSKWLYGEHMSSQNAVGYFHGGRGLYGGGMESMAGEVKTHGGSLPEMRRFAGDSDRSS 185

[Close]

BLAST of Lsi03G004380 vs. TAIR 10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 41  KFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSCHR---NYFTA----LHVQNWL 100
           K+ECQYCCREF NSQALGGHQNAH++ERQ LKRAQ+++      N+  A      ++N +
Sbjct: 72  KYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSNAGSASQFLRNPI 131

Query: 101 SSSFAPPPTVVGA 107
            S+FAPPP ++ +
Sbjct: 132 VSAFAPPPHLLSS 144

[Close]

BLAST of Lsi03G004380 vs. TAIR 10
Match: AT1G10480.1 (zinc finger protein 5 )

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-10
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 2   SKSQLKLFGFNITKENKTVSHFT-QPPSAVWPESENPHVPKFECQYCCREFSNSQALGGH 61
           S   +KLFGF +   ++T    T +  S+    +    + + ECQYC +EF+NSQALGGH
Sbjct: 19  SDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGH 78

Query: 62  QNAHREERQLLKRAQMKSCHRN--YFTALHVQ 91
           QNAH++ER   KR Q+++   +  Y+   H Q
Sbjct: 79  QNAHKKERLKKKRLQLQARRASIGYYLTNHQQ 110

[Close]

BLAST of Lsi03G004380 vs. TAIR 10
Match: AT2G41940.1 (zinc finger protein 8 )

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 33  ESENPHVPKFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSC--HRNYFTALHVQ 92
           + +N +  +FEC YC R F  SQALGGHQNAH+ ERQ  KR  M S   H       H+ 
Sbjct: 86  DKDNNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKRGSMTSYLHHHQPHDPHHIY 145

Query: 93  NWLSS 96
            +L++
Sbjct: 146 GFLNN 150

[Close]

BLAST of Lsi03G004380 vs. TAIR 10
Match: AT3G58070.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 39/111 (35.14%), Postives = 47/111 (42.34%), Query Frame = 0


Query: 38  HVPKFECQYCCREFSNSQALGGHQNAHREERQLLKRAQMKSCH---RNYFTALHVQNWLS 97
           H  +FEC YC R F  SQALGGHQNAH+ ERQL KR      +    N ++  H  +W +
Sbjct: 87  HNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKRGVSSYFYHPDNNPYSYRHYPSWTN 146

Query: 98  ------------SSFAPPPTVVGAPPLAAGLYAMSRPPLSQEVRRQAGVFT 134
                       SS   P      P   + L     PP  Q V      FT
Sbjct: 147 GPLTAARSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFT 197

The following BLAST results are available for this feature:

BLAST of Lsi03G004380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39265	5.8e-19	36.36	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]
Q9C9H1	1.6e-13	53.42	Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1	[more]
Q39264	1.2e-08	39.13	Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1	[more]
P93751	2.3e-07	44.62	Zinc finger protein 8 OS=Arabidopsis thaliana OX=3702 GN=ZFP8 PE=1 SV=1	[more]
Q84WI0	3.0e-07	35.14	Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1	[more]

BLAST of Lsi03G004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG99	9.9e-62	75.93	zinc finger protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111445220 PE=4 SV...	[more]
A0A6J1JW51	8.4e-61	75.31	zinc finger protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111489415 PE=4 SV=1	[more]
A0A0A0LQ31	3.7e-24	70.59	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404810 P...	[more]
A0A2I4DX61	2.5e-20	38.46	zinc finger protein GIS3-like OS=Juglans regia OX=51240 GN=LOC108984293 PE=4 SV=...	[more]
A0A6A1VGC0	4.2e-20	38.89	Zinc finger protein 6 OS=Morella rubra OX=262757 GN=CJ030_MR6G021594 PE=4 SV=1	[more]

BLAST of Lsi03G004380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886238.1	3.8e-68	82.53	zinc finger protein 6-like [Benincasa hispida]	[more]
XP_022939247.1	2.0e-61	75.93	zinc finger protein 6-like [Cucurbita moschata]	[more]
KAG6578343.1	1.3e-60	75.93	Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023550962.1	1.3e-60	75.93	zinc finger protein 6-like [Cucurbita pepo subsp. pepo] >KAG7015922.1 Zinc finge...	[more]
XP_022993371.1	1.7e-60	75.31	zinc finger protein 6-like [Cucurbita maxima]	[more]

BLAST of Lsi03G004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67030.1	4.1e-20	36.36	zinc finger protein 6	[more]
AT1G68360.1	1.2e-14	53.42	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G10480.1	8.7e-10	39.13	zinc finger protein 5	[more]
AT2G41940.1	1.6e-08	44.62	zinc finger protein 8	[more]
AT3G58070.1	2.1e-08	35.14	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 20..90 e-value: 3.6E-6 score: 28.7
None	No IPR available	PANTHER	PTHR46353:SF9	ZINC FINGER PROTEIN GIS3	coord: 2..118
IPR044299	Zinc finger protein GIS3/ZFP5/ZFP6	PANTHER	PTHR46353	ZINC FINGER PROTEIN 5	coord: 2..118
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 44..64
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 42..69 score: 11.551563
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 41..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004380.1	Lsi03G004380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010090	trichome morphogenesis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding