
Lsi03G004160 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTTAAGGTTTATGTAACTTTTCCATTGGGCTTCAAAATCAGAACTGAGAATTCAAGTTTCAGATTGTAAAGAAAAGATGGGCATGGCGGATTGAAGAACAAGTTCTTTGGGTACTATATTTTTTTTTTTATTTTTTTTATTTTCCTTTCTGTTTACGTTTCTATGAGGGGAAAGAAGGCTGTTTTTTGTGATGCCAAAATGATTTGTGTGTTCTTTCTTTCAAAAGCATCCATCATTATATATATTAAGTTTGATTATATGTTTTAATATTTTCTTTTAATTGATGATATGAATTAATTGATCATATTCACATGGGTGATCTGGGTTAGTTAAGTTTTTTTTTTCTTTGAAATTAATAAATTTCAATTTATGTTTTCTATTTGCCATTGAGTTTAGGAAAAAAAAAGGAGAGAGTCATTTCGACGAATTTTGGAATGGAAAATTACTATGAACACAAAATATCAAACTATATATTTATAAATATAAAAAAATTTCACTATCTATCAGCAATAAATCATGATAGAATTCTATTGTTTGAGCAATAGACTTCTATCACTGTCTATCGCTCAAGCACTATCTATCGCTAAAGCGATAGAATTCTATCGTGGTCTATTACTAATAGACAGTAAAAAAATTTCTATATTTGAAAACAACCCTTTTGGAATAGGTTATTATTTCATTTCTCTATATAATTTAGGAATGGTCACAATTTTTTGTTTACATTTTATAATTTTTTATAATATTTTTAAAGTTTTAAATTTAGTTAATATCATTTCTTTTAGTTCGGGTGAAAATTTAAACCTATAGTATAAGTTAATCTATATCATGCCACCCTTTTTGTTACATATTAAAAAAAAATTATAATAATTCAATTTTTTGAAAAAGAAATATTTACAACGTCAAAAATTTTAATTGGGTTAGTAGAGGGCATCTAAATATTTTTTCATAAGTCGAAAGCATAGCTCTTAAAATTTGACCTCATAAATGACATCATTCTGGTTGCTACTTTTGTTATATTTTGTACTTTAATTTTACTAATTGTGTTAATTGATTAAGATTTTCTAAGTGAGTAAAAGAGGTTAACCATATTTAATTAAATGGTAGAAACCAAAAAATAAGTTCAAATTCTAGGACAACAAATTTTCTTTTTCTTTTATTTTGTTTTTTTAAAAAAGAAAGTAATTATTAATTAAATTAAAAAAACTTAGATGAAGCTGCACCATGCTTATTTTCAATAAATCTAAAATTTAGTTCTTCAAAATTAATTTTTACGAGAATTAATTAAAAAATAATATAACTTTTATGTCAGAAAATAAAATATGTGAATATGTTGTCAAACTTTATAGTAAAAAATGCTATAGATAACAATTTTTTTTAAAAAAATAAACAATAAACTAATATTGAAGACTAAATTATAATAAAAATTGGACAATAAAAAATAGAACGACTAAAAATTAAATAAAGTATAAAAAAATAATACATGAATTGCCCTAATTAATTGAGAAATGTGAATTGAAATTGAAGTTAAGAAATAAATAGAAAATTTAGAATTACAAAAACCAAATTGAAATTAAGAATTGAATGATTTTTTTGTTTGTTTTTTTGGTATTAATTTAGTCTGAGGCAGAGAGTTTCAATGGAAGAGGAGATGTGTCCGGCATTGCCGTCGAGTCTTTCTTCAACAACCGAAGTGTCAGCGGCGGAAATGGAAGATTTCAGCCTGCATTTCGCTTCAATGTATCATTCAATTTTTCCTCCATTATTATCTTCCTCCTCTCTTCCAACCTCTCTTTCATTCACTCCCTCCCCCTCCTCCTCCATCTCCTCCGCCGACGACGACCACAACCACCACTGCACCGTCGCCGCCAGTTCCACCACTGACGACCTCCTTTTTCAGGCCCGCCTTATACTCGAACACCGTCACCTCCGTCACCGCCACGATCTCTCCCTCCGCCGCCTCCGTCAAGTCGCTGAAGATGCTGATTATCTCCGGCGGGAGAATGCCCAGCTCCGATTGGCCAACGCCGAGCTCGTGAAGGTTATTTCGTCGAAGACGGCCGTTGACGATCTCGTTTCAATTCCGAATTCTCATCTCCGGTCTCTGATTGGAAGCGGCCAAAGTGGGGAAGAAATTGGTTATGATATAATCAGTCCGACGAGTGTGATCGGAAAATACAATGACCAGTTCGACGGAAGGAATGATCTCCGCCGGATCTCTCTTCCAAAGAGCATTTCCGTCCGCTCTGCAACTGCCGCCGCCGCTTCACTCAACATCCAATCGGTAGGCTTCCTCAACTTATTGTTATTATTATTTTGTTTATTTTATTGTTTCCCCCTTGTGGGGACATTGAATTACTTGAAAAAAAAAATTAAATTTCAAAAATACTAAAATGTCTAAAATGTTCCTATGTCAATTTTACGAAAATATCAAATTGTCAATGTCCAATATTTGAAAATAGAAAAATTTTTAAAAATAGAAAAATAAAGAAAACTATTCACACACAATAGCAAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCGATCATCGTCTATCCGTTATAGAAATGATAGAAGTCTATCACTGATAGATGTTGATAGAAGTCTATCAATGTCTATCAATATTTTTTTTACTATTTTCTGTAAATATTTTGATATTTTTTTTTCTATTTTTGAAAATTTTCATTTAAATTAATTAATAAACATTTCACATTTTAATAATGAATTAAAATGTTTATTATTAATATTATATGTTCACGTCATTAGTTACATTATAAATTTCTTTATGTTTCATTGATTTTTATGATATAATGGTAATTATGTTGATTCACCTTCATGTCGATGTCGAGCTCATGGATATGTAGAGTATCTATGAAAATGTTGTGACATGTTGATGAAAATTAATACCCTAACTAGAACTTTGTCATTTGTTTAAAAAATATTCACATTCTTTCAAAATTTACAATATTGGACAATAATGACCTGGAACGACATAATTAATTATAATCCAGAACGAAAATTGAGACTCAAACATGACACACTATTTAAGGTCATTACTATATTCATTTCTGGTTTTAATATAAATCTAAAATTTCTAAAATATTTCTATTTGAAGAGTATTTTTAATTTGCAATATTTATAAAAGTTAGATCTCAAGACATGACGAAGATGCTAAAGATGTGTCAACCAAGTTGAAATGTTTTCGTGCACTTCCTAATCTCTCTCATCTAGTATCTTGTTTAAAAAAAAAAAGAATATAAATATTTTTTAAACAAAGTTGATATATATATATATATTGTAATTTAACAAAAAAAAAAAATCATTGTGATGGTCCGTTTCAATAATTTGTTTTCTTATCGCTTTTCTTCAGTTATTTTTATTTTGGTCTTCAAATTTTCTAATTACTACAAGCTACTATTCTATTTGAGATATACTTTTTTGAGTCGCAATCATCTTTTTCGGTCCACTCATTAGTTGCTTGATCCATCTCTAAAATTGTTTAACGAAGTAGTGTTTAGATAAGTATTATTCTTACTAAGGATTTAAATACAGTGTTAGATATGTCTCAATTTTATAATAGGGTATTAATGTAGGAATATAAAAAAAAAAATGTCTTTTTTTAAGAACATCAATGAAAATGTTAATGTTAATAGTTTTTTTTTTTTTTTTTTTTTTTATTTCAATAAAATATTTAAATGAATAAGTATTTCAAAGTTTAACCTATTACTCCAAGGGCTACTTGATGAATTACAACCTTAATAGGACTTTCAAACCTATATCTAATAAGTTGTTTAATTTTTGAAAAATGTATTTAAGAAATATATATATCTAAAATTTTTAAGACTGTTTTTAAATATAGAAAAATGAAAAATTTCATTATCCGATAAACCACAATAGACTTCGTTGATAGTAAAAATTTTTATATTCTTTCTATTTATAATAATTTTCTAAATTTTTATTGTTGTATTTAATATAAGGTTCCACTAATAAATTAAAGAAGTTTTAATTTCGTTAAGGTAAAAGAAGTTATTAGGTACAAGACAAAAATTTAGACAGTTATTAGGGACATAAATTGAAAGTTAGATTTGGTTATAGCAGCGCCGGGCGTGCACTCCGATGAGTGATGGTGGGAGCAGAAAAAGAGAAGAGGAAGCGGCAGAATTGGAGATATACAATCAAGGCATGACCAAGACGGAGCTATGCAACAAATGGCAGGAGACCGGCGGCTGCCCTTACGGCAACCATTGCCGATTTGCTCATGGACTTGAAGAGCTCCGGCCAATCATGAGACACCCACGTTATAAGACACAAATGTGTAGAATGGTACTCGCCGGTGAAAAGTGTCCTTATGGTCATCGGTGTCATTTTCGTCATTCTCTTAGCAAACAATAAAAGACGACAACAACAATAACGACAACGACAACAACACATACCGAAAGTACTTAACAAGTCCGTAATAAAGACCAAACAAAACATCAGAATTCAACGATTTTAGAATGAATAAAGGGAAAAAAAAAGATTTACTTGTGTCTTTGTAGTGTATATAATAATGACCTTATATATATTTGTTGTTGTTATTATTATTATTATTATTTTGATTTATTTGTGGAATGATTTAAAGATTTCTTTTCCTTCTTTGAAAATGAATATTGTATATGATTCAAATGTTGAATATGTACTGATACAGCAGAAATAAAAAAGAATTATATATATGT TGTTAAGGTTTATGTAACTTTTCCATTGGGCTTCAAAATCAGAACTGAGAATTCAAGTTTCAGATTGTAAAGAAAAGATGGGCATGGCGGATTGAAGAACAAGTTCTTTGGTCTGAGGCAGAGAGTTTCAATGGAAGAGGAGATGTGTCCGGCATTGCCGTCGAGTCTTTCTTCAACAACCGAAGTGTCAGCGGCGGAAATGGAAGATTTCAGCCTGCATTTCGCTTCAATGTATCATTCAATTTTTCCTCCATTATTATCTTCCTCCTCTCTTCCAACCTCTCTTTCATTCACTCCCTCCCCCTCCTCCTCCATCTCCTCCGCCGACGACGACCACAACCACCACTGCACCGTCGCCGCCAGTTCCACCACTGACGACCTCCTTTTTCAGGCCCGCCTTATACTCGAACACCGTCACCTCCGTCACCGCCACGATCTCTCCCTCCGCCGCCTCCGTCAAGTCGCTGAAGATGCTGATTATCTCCGGCGGGAGAATGCCCAGCTCCGATTGGCCAACGCCGAGCTCGTGAAGGTTATTTCGTCGAAGACGGCCGTTGACGATCTCGTTTCAATTCCGAATTCTCATCTCCGGTCTCTGATTGGAAGCGGCCAAAGTGGGGAAGAAATTGGTTATGATATAATCAGTCCGACGAGTGTGATCGGAAAATACAATGACCAGTTCGACGGAAGGAATGATCTCCGCCGGATCTCTCTTCCAAAGAGCATTTCCGTCCGCTCTGCAACTGCCGCCGCCGCTTCACTCAACATCCAATCGCAGCGCCGGGCGTGCACTCCGATGAGTGATGGTGGGAGCAGAAAAAGAGAAGAGGAAGCGGCAGAATTGGAGATATACAATCAAGGCATGACCAAGACGGAGCTATGCAACAAATGGCAGGAGACCGGCGGCTGCCCTTACGGCAACCATTGCCGATTTGCTCATGGACTTGAAGAGCTCCGGCCAATCATGAGACACCCACGTTATAAGACACAAATGTGTAGAATGGTACTCGCCGGTGAAAAGTGTCCTTATGGTCATCGGTGTCATTTTCGTCATTCTCTTAGCAAACAATAAAAGACGACAACAACAATAACGACAACGACAACAACACATACCGAAAGTACTTAACAAGTCCGTAATAAAGACCAAACAAAACATCAGAATTCAACGATTTTAGAATGAATAAAGGGAAAAAAAAAGATTTACTTGTGTCTTTGTAGTGTATATAATAATGACCTTATATATATTTGTTGTTGTTATTATTATTATTATTATTTTGATTTATTTGTGGAATGATTTAAAGATTTCTTTTCCTTCTTTGAAAATGAATATTGTATATGATTCAAATGTTGAATATGTACTGATACAGCAGAAATAAAAAAGAATTATATATATGT ATGGAAGAGGAGATGTGTCCGGCATTGCCGTCGAGTCTTTCTTCAACAACCGAAGTGTCAGCGGCGGAAATGGAAGATTTCAGCCTGCATTTCGCTTCAATGTATCATTCAATTTTTCCTCCATTATTATCTTCCTCCTCTCTTCCAACCTCTCTTTCATTCACTCCCTCCCCCTCCTCCTCCATCTCCTCCGCCGACGACGACCACAACCACCACTGCACCGTCGCCGCCAGTTCCACCACTGACGACCTCCTTTTTCAGGCCCGCCTTATACTCGAACACCGTCACCTCCGTCACCGCCACGATCTCTCCCTCCGCCGCCTCCGTCAAGTCGCTGAAGATGCTGATTATCTCCGGCGGGAGAATGCCCAGCTCCGATTGGCCAACGCCGAGCTCGTGAAGGTTATTTCGTCGAAGACGGCCGTTGACGATCTCGTTTCAATTCCGAATTCTCATCTCCGGTCTCTGATTGGAAGCGGCCAAAGTGGGGAAGAAATTGGTTATGATATAATCAGTCCGACGAGTGTGATCGGAAAATACAATGACCAGTTCGACGGAAGGAATGATCTCCGCCGGATCTCTCTTCCAAAGAGCATTTCCGTCCGCTCTGCAACTGCCGCCGCCGCTTCACTCAACATCCAATCGCAGCGCCGGGCGTGCACTCCGATGAGTGATGGTGGGAGCAGAAAAAGAGAAGAGGAAGCGGCAGAATTGGAGATATACAATCAAGGCATGACCAAGACGGAGCTATGCAACAAATGGCAGGAGACCGGCGGCTGCCCTTACGGCAACCATTGCCGATTTGCTCATGGACTTGAAGAGCTCCGGCCAATCATGAGACACCCACGTTATAAGACACAAATGTGTAGAATGGTACTCGCCGGTGAAAAGTGTCCTTATGGTCATCGGTGTCATTTTCGTCATTCTCTTAGCAAACAATAA MEEEMCPALPSSLSSTTEVSAAEMEDFSLHFASMYHSIFPPLLSSSSLPTSLSFTPSPSSSISSADDDHNHHCTVAASSTTDDLLFQARLILEHRHLRHRHDLSLRRLRQVAEDADYLRRENAQLRLANAELVKVISSKTAVDDLVSIPNSHLRSLIGSGQSGEEIGYDIISPTSVIGKYNDQFDGRNDLRRISLPKSISVRSATAAAASLNIQSQRRACTPMSDGGSRKREEEAAELEIYNQGMTKTELCNKWQETGGCPYGNHCRFAHGLEELRPIMRHPRYKTQMCRMVLAGEKCPYGHRCHFRHSLSKQ Homology
BLAST of Lsi03G004160 vs. ExPASy Swiss-Prot
Match: Q9C9N3 (Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=At1g66810 PE=2 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 7.7e-52 Identity = 132/323 (40.87%), Postives = 176/323 (54.49%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy Swiss-Prot
Match: A2ZVY5 (Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0645000 PE=2 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 2.4e-45 Identity = 123/294 (41.84%), Postives = 165/294 (56.12%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy Swiss-Prot
Match: Q9C9F5 (Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=At1g68200 PE=2 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 5.4e-45 Identity = 116/285 (40.70%), Postives = 162/285 (56.84%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy Swiss-Prot
Match: Q6L5G1 (Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0576300 PE=2 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.8e-40 Identity = 115/303 (37.95%), Postives = 162/303 (53.47%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy Swiss-Prot
Match: Q10MN8 (Putative zinc finger CCCH domain-containing protein 21 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0301500 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.7e-27 Identity = 101/287 (35.19%), Postives = 135/287 (47.04%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy TrEMBL
Match: A0A1S3B3V9 (zinc finger CCCH domain-containing protein 14-like OS=Cucumis melo OX=3656 GN=LOC103485461 PE=4 SV=1) HSP 1 Score: 517.3 bits (1331), Expect = 4.4e-143 Identity = 271/318 (85.22%), Postives = 289/318 (90.88%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy TrEMBL
Match: A0A5D3BUE0 (Zinc finger CCCH domain-containing protein 14-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00430 PE=4 SV=1) HSP 1 Score: 517.3 bits (1331), Expect = 4.4e-143 Identity = 271/318 (85.22%), Postives = 289/318 (90.88%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy TrEMBL
Match: A0A0A0LQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404980 PE=4 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 9.9e-143 Identity = 269/316 (85.13%), Postives = 288/316 (91.14%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy TrEMBL
Match: A0A6J1GXH1 (zinc finger CCCH domain-containing protein 14-like OS=Cucurbita moschata OX=3662 GN=LOC111458383 PE=4 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 8.7e-115 Identity = 228/314 (72.61%), Postives = 257/314 (81.85%), Query Frame = 0
BLAST of Lsi03G004160 vs. ExPASy TrEMBL
Match: A0A6J1JRY1 (zinc finger CCCH domain-containing protein 14-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487801 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 1.7e-110 Identity = 226/319 (70.85%), Postives = 253/319 (79.31%), Query Frame = 0
BLAST of Lsi03G004160 vs. NCBI nr
Match: XP_008441302.1 (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis melo] >XP_008441303.1 PREDICTED: zinc finger CCCH domain-containing protein 14-like [Cucumis melo] >TYK02740.1 zinc finger CCCH domain-containing protein 14-like [Cucumis melo var. makuwa]) HSP 1 Score: 517.3 bits (1331), Expect = 9.2e-143 Identity = 271/318 (85.22%), Postives = 289/318 (90.88%), Query Frame = 0
BLAST of Lsi03G004160 vs. NCBI nr
Match: XP_004138800.1 (zinc finger CCCH domain-containing protein 14 [Cucumis sativus] >XP_011649940.1 zinc finger CCCH domain-containing protein 14 [Cucumis sativus] >XP_031736506.1 zinc finger CCCH domain-containing protein 14 [Cucumis sativus] >KAE8652256.1 hypothetical protein Csa_021891 [Cucumis sativus]) HSP 1 Score: 516.2 bits (1328), Expect = 2.0e-142 Identity = 269/316 (85.13%), Postives = 288/316 (91.14%), Query Frame = 0
BLAST of Lsi03G004160 vs. NCBI nr
Match: XP_038886155.1 (zinc finger CCCH domain-containing protein 14-like [Benincasa hispida]) HSP 1 Score: 506.5 bits (1303), Expect = 1.6e-139 Identity = 266/313 (84.98%), Postives = 281/313 (89.78%), Query Frame = 0
BLAST of Lsi03G004160 vs. NCBI nr
Match: KAG7033379.1 (Zinc finger CCCH domain-containing protein 14, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 434.1 bits (1115), Expect = 1.0e-117 Identity = 231/314 (73.57%), Postives = 261/314 (83.12%), Query Frame = 0
BLAST of Lsi03G004160 vs. NCBI nr
Match: XP_023552705.1 (zinc finger CCCH domain-containing protein 14-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 427.6 bits (1098), Expect = 9.5e-116 Identity = 229/319 (71.79%), Postives = 260/319 (81.50%), Query Frame = 0
BLAST of Lsi03G004160 vs. TAIR 10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein ) HSP 1 Score: 205.7 bits (522), Expect = 5.5e-53 Identity = 132/323 (40.87%), Postives = 176/323 (54.49%), Query Frame = 0
BLAST of Lsi03G004160 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein ) HSP 1 Score: 183.3 bits (464), Expect = 2.9e-46 Identity = 116/284 (40.85%), Postives = 162/284 (57.04%), Query Frame = 0
BLAST of Lsi03G004160 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein ) HSP 1 Score: 183.0 bits (463), Expect = 3.8e-46 Identity = 116/285 (40.70%), Postives = 162/285 (56.84%), Query Frame = 0
BLAST of Lsi03G004160 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein ) HSP 1 Score: 54.7 bits (130), Expect = 1.6e-07 Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 0
BLAST of Lsi03G004160 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein ) HSP 1 Score: 50.1 bits (118), Expect = 3.9e-06 Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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